BAC Information

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BAC

Clone NameB6Ng01-030M07
ChromosomeX (Build37)
Map Location 70,126,972 - 70,256,708
singlet/doubletdoublet
Overlap geneCetn2, Nsdhl, Zfp185
Upstream geneGm1141, Prrg3, Fate1, Cnga2, Magea4, Gabre, Magea10, Gabra3, Gabrq, Magea9
Downstream genePnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030M07.bB6Ng01-030M07.g
ACCDH860572DH860573
length1,1561,115
definitionDH860572|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M07, 5' end.DH860573|Mus musculus domesticus DNA, BAC clone: B6Ng01-030M07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,126,972 - 70,127,961)(70,255,573 - 70,256,708)
sequence
gaattcaacccctggcacccacaaagcagaagaaaactgaatcctacaat
ttgtcctctgacctccacatgcacactgaggtacatgtatacacacacac
acacacacacacacacacacacacacacactaaatagatgtaatttttaa
attcaccataaatttccaaatgttcatcataaaatataatttttttttct
gatgatcttatgtaaccttgctaaactccaccactagtcctaaaagaatt
tcttcaggttgaaagaattttctgcatatattataatctgtgtgtaaaga
tagtttactttccccttttattcatctgggggtctatgatgtttagtact
acttgtcaacttggcacaatctaggagcacttgtgaaggagagtctcact
gagaaattttgtagattaggttggcctgtgggtaattgtcttgatatatt
catcgaagtgggatgacaccattccctagacaggggattctgaactgtat
aatagtaacaaaagctaacttgcatacctgattatagacataatgttatc
tgctttcttaaattacacactgtgacttccccatgatgctggactttgac
atgaaacgccaatctaaaataaaccctttcttccattagttcattttgtc
agtttattttgtcacagcatcagaaaaaaaattcaggcaccttctaagag
acattgtacgttcatttttatatagtagtctcctgcagcatgacttctag
cagaggtggatcttcctcacccctacattgttataatcctgacctccata
tttcacctgagaccaacatgatccacatatctgaaagaaaatagggatgc
cttgaggaaaagattatttactgacagctagaggacagtgatttcagatt
gacaacagaaactgaagtgagttatatggcaaagaaagaaatgaatagaa
agttctctggtgtagccaacatggagcacaaaacatttctaggctgaagt
aagatgagtcaggctggtgagatgtttggtgagttagtggcttgccatca
gtttaggacagagtataatcccctacacacaccaccacttaatttcattg
aaattattttgaaggaagtagatcatgccatctcccagaagctttattgc
cactta
gaattctcagttcctcttgcactgtgcctgcctggatgctgccatgctcc
caccttgatgataatgggctgaacttctgaacctgtaagccagccccaat
taaatgctgtccttataagagttgccttggtcatggtgcctgttcacagc
agtaaaaccctaagacactcaccatatacctctctttgacgggtctctgg
tttcctcaatctgcaatgccttcattagcatgtcgtttgggggaaatctt
ccttagccttcaaacctaagttcaacctcactcccccaaacaccacagaa
ctttctcctgcatccgtaggctgttcttgtaaaaatttattttaaaatgt
ttttgttgtgtctcttattgtacctggtacactgtgttatgttacataag
gacaatttaaaacaagcattttgtacactgaacatatttcccccatatac
cttgactctcattttacacacacctccaactaattccctttgttccccta
gatatttccatttctaattttatgtcattgattttatgtaccctttaaaa
tctccgaaccacaaatgagagcggaggtttgaaaatctgcccatacttca
cagttacctttcgttacagtcacagtatccatcattcccgtgcagacaca
cacacacacacacacacacacacacacacacacaaactgtcttcactctc
tcttttgctttcttaagcgtggtccttccttgtctttttcattccatttc
tctcttccccacagtccgtgtcactcatgctccctgtcatactttgacac
caccactggataaagaaaaatagtcctcagcaaacctagcagcttaccat
gtacgctctgagaaacagacttgcctcttgcctcatgcaccaagaacatg
cagacttcttatgttgatcacagtcccattccacatctcaaacccgagaa
gcagtcaacaccgcccaggaccagggtatcacattctgagcacattcaga
gaaccagcagtgcctggagtagaaaaacagctaccgcactgactaaacag
ctcgagctaatcgaggccactcaggaggatgtcttcccagattgtctgca
gctcttaaggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_70126972_70127961
seq2: B6Ng01-030M07.b_236_1201

seq1  TTTTTTTTCTGATGATCTTATGTAACCTTGCTAAACTCCACCACTAGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTGATGATCTTATGTAACCTTGCTAAACTCCACCACTAGTCC  50

seq1  TAAAAGAATTTCTTCAGGTTGAAAGAATTTTCTGCATATATTATAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAATTTCTTCAGGTTGAAAGAATTTTCTGCATATATTATAATCTG  100

seq1  TGTGTAAAGATAGTTTACTTTCCCCTTTTATTCATCTGGGGGTCTATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAAGATAGTTTACTTTCCCCTTTTATTCATCTGGGGGTCTATGAT  150

seq1  GTTTAGTACTACTTGTCAACTTGGCACAATCTAGGAGCACTTGTGAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTACTACTTGTCAACTTGGCACAATCTAGGAGCACTTGTGAAGGA  200

seq1  GAGTCTCACTGAGAAATTTTGTAGATTAGGTTGGCCTGTGGGTAATTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCACTGAGAAATTTTGTAGATTAGGTTGGCCTGTGGGTAATTGTC  250

seq1  TTGATATATTCATCGAAGTGGGATGACACCATTCCCTAGACAGGGGATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATATTCATCGAAGTGGGATGACACCATTCCCTAGACAGGGGATTC  300

seq1  TGAACTGTATAATAGTAACAAAAGCTAACTTGCATACCTGATTATAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTATAATAGTAACAAAAGCTAACTTGCATACCTGATTATAGACA  350

seq1  TAATGTTATCTGCTTTCTTAAATTACACACTGTGACTTCCCCATGATGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTATCTGCTTTCTTAAATTACACACTGTGACTTCCCCATGATGCT  400

seq1  GGACTTTGACATGAAACGCCAATCTAAAATAAACCCTTTCTTCCATTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTGACATGAAACGCCAATCTAAAATAAACCCTTTCTTCCATTAGT  450

seq1  TCATTTTGTCAGTTTATTTTGTCACAGCATCAG-AAAAAAATTCAGGCAC  499
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCATTTTGTCAGTTTATTTTGTCACAGCATCAGAAAAAAAATTCAGGCAC  500

seq1  CTTCTAAGAGACATTGTACGTTCATTTTTATATAGTAGTCTCCTGCAGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAGAGACATTGTACGTTCATTTTTATATAGTAGTCTCCTGCAGCA  550

seq1  TGACTTCTAGCAGAGGTGGATCTTCCTCACCCCTACATTGTTATAATCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTAGCAGAGGTGGATCTTCCTCACCCCTACATTGTTATAATCCT  600

seq1  GACCTCCATATTTCACCTGAGACCAACATGATCCACATATCTGAAAGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCCATATTTCACCTGAGACCAACATGATCCACATATCTGAAAGAAA  650

seq1  ATAGGGATGCCTTGAGGAAAAAGATTATTTACTGACAGCTAGAAGACAGT  699
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  ATAGGGATGCCTTGAGG-AAAAGATTATTTACTGACAGCTAGAGGACAGT  699

seq1  GATTTCAGATTGAACAACAGAAAACTGAAGTGAGTTATAATGGCAAAAGA  749
      |||||||||||| ||||||| ||||||||||||||||| ||||| |||||
seq2  GATTTCAGATTG-ACAACAG-AAACTGAAGTGAGTTAT-ATGGC-AAAGA  745

seq1  AAAGAAAATGAATAGAAAAGTTCTCTGGTGGTAGCCAACATGGATGCACA  799
      ||   |||||||||| ||||||||||||| |||||||||||||| |||||
seq2  AA--GAAATGAATAG-AAAGTTCTCTGGT-GTAGCCAACATGGA-GCACA  790

seq1  AAACATTTCTAGGCTGGAAGTAAGATGAGTCAGGCTGGTGAGATGTCTTG  849
      ||||||||||||||| |||||||||||||||||||||||||||||| |||
seq2  AAACATTTCTAGGCT-GAAGTAAGATGAGTCAGGCTGGTGAGATGT-TTG  838

seq1  GTGAGTAAAGGTGCTTGCCATCAAGTTTAGGACCAGAGTATAATCCCCTA  899
      ||||||  ||  |||||||||| ||||||||| |||||||||||||||| 
seq2  GTGAGT-TAGTGGCTTGCCATC-AGTTTAGGA-CAGAGTATAATCCCCT-  884

seq1  ACACACACACACACTTAATTTCATTGAAATATAATTTTGAAAGGAAGTAG  949
      ||||||||   |||||||||||||||||  || |||||| ||||||||| 
seq2  ACACACACCACCACTTAATTTCATTGAA--ATTATTTTG-AAGGAAGTA-  930

seq1  GATCATGCCTATCTCCACAGAAGCTTATTATTGCCATCTTA  990
      ||||||||| |||||| ||||||||  ||||||||| ||||
seq2  GATCATGCC-ATCTCC-CAGAAGCT--TTATTGCCA-CTTA  966

seq1: chrX_70255573_70256708
seq2: B6Ng01-030M07.g_66_1180 (reverse)

seq1  CCCCACCTTTGAGAGGACATTGCAGACAAACTGAGGAAGACATACCCTCC  50
      ||||||| || ||||     ||||||||| ||| |||||||||  |||||
seq2  CCCCACC-TTAAGAG----CTGCAGACAATCTG-GGAAGACAT--CCTCC  42

seq1  TCGATGGCCTCAGATGTAGCTCGAGCTGTTTATGTCAGTGCGGTAGCTTG  100
      |   ||||||| ||| |||||||||||||||| |||||||||||||| ||
seq2  TGAGTGGCCTC-GAT-TAGCTCGAGCTGTTTA-GTCAGTGCGGTAGC-TG  88

seq1  TTTTTCTTACTCCAGGCCACTGCCTGGGTTCTCTGAATGTGCTCAGAATG  150
      |||||| ||||||||| ||||||   ||||||||||||||||||||||||
seq2  TTTTTC-TACTCCAGG-CACTGC--TGGTTCTCTGAATGTGCTCAGAATG  134

seq1  TTGATACCCTGGTCCTGGGGCGGTGTTGACTGCTTTCTCGGGTTTGAGAT  200
       ||||||||||||||| |||||||||||||||| ||||||||||||||||
seq2  -TGATACCCTGGTCCT-GGGCGGTGTTGACTGC-TTCTCGGGTTTGAGAT  181

seq1  GTTGGAATGGGACTGTGATCAACATAAGAAGTCTGCATGTTTCTTGGTGC  250
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  G-TGGAATGGGACTGTGATCAACATAAGAAGTCTGCATG-TTCTTGGTGC  229

seq1  ATGAGGCAAGAGGCAAGTCTGTTTCCCAGAGCGTACATGGTAAGCTGCTA  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGAGGCAAGAGGCAAGTCTGTTTCTCAGAGCGTACATGGTAAGCTGCTA  279

seq1  GGTTTGCTGAGGACTACTTTTCTTTATCCAGTGGTGGTGTCAAAGTATGA  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGTTTGCTGAGGACTATTTTTCTTTATCCAGTGGTGGTGTCAAAGTATGA  329

seq1  CAGGGAGCATGAGTGACACGGACTGTGGGGAAGAGAGAAATGGAATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCATGAGTGACACGGACTGTGGGGAAGAGAGAAATGGAATGAAA  379

seq1  AAGACAAGGAAGGACCACGCTTAAGAAAGCAAAAGAGAGAGTGAAGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGGAAGGACCACGCTTAAGAAAGCAAAAGAGAGAGTGAAGACAG  429

seq1  TTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCACGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCACGGG  479

seq1  AATGATGGATACTGTGACTGTAACGAAAGGTAACTGTGAAGTATGGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGATACTGTGACTGTAACGAAAGGTAACTGTGAAGTATGGGCAG  529

seq1  ATTTTCAAACCTCCGCTCTCATTTGTGGTTCGGAGATTTTAAAGGGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAACCTCCGCTCTCATTTGTGGTTCGGAGATTTTAAAGGGTACA  579

seq1  TAAAATCAATGACATAAAATTAGAAATGGAAATATCTAGGGGAACAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAATGACATAAAATTAGAAATGGAAATATCTAGGGGAACAAAGG  629

seq1  GAATTAGTTGGAGGTGTGTGTAAAATGAGAGTCAAGGTATATGGGGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGTTGGAGGTGTGTGTAAAATGAGAGTCAAGGTATATGGGGGAAA  679

seq1  TATGTTCAGTGTACAAAATGCTTGTTTTAAATTGTCCTTATGTAACATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCAGTGTACAAAATGCTTGTTTTAAATTGTCCTTATGTAACATAA  729

seq1  CACAGTGTACCAGGTACAATAAGAGACACAACAAAAACATTTTAAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTACCAGGTACAATAAGAGACACAACAAAAACATTTTAAAATAA  779

seq1  ATTTTTACAAGAACAGCCTACGGATGCAGGAGAAAGTTCTGTGGTGTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACAAGAACAGCCTACGGATGCAGGAGAAAGTTCTGTGGTGTTTG  829

seq1  GGGGAGTGAGGTTGAACTTAGGTTTGAAGGCTAAGGAAGATTTCCCCCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTGAGGTTGAACTTAGGTTTGAAGGCTAAGGAAGATTTCCCCCAA  879

seq1  ACGACATGCTAATGAAGGCATTGCAGATTGAGGAAACCAGAGACCCGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACATGCTAATGAAGGCATTGCAGATTGAGGAAACCAGAGACCCGTCA  929

seq1  AAGAGAGGTATATGGTGAGTGTCTTAGGGTTTTACTGCTGTGAACAGGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGTATATGGTGAGTGTCTTAGGGTTTTACTGCTGTGAACAGGCA  979

seq1  CCATGACCAAGGCAACTCTTATAAGGACAGCATTTAATTGGGGCTGGCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGACCAAGGCAACTCTTATAAGGACAGCATTTAATTGGGGCTGGCTT  1029

seq1  ACAGGTTCAGAAGTTCAGCCCATTATCATCAAGGTGGGAGCATGGCAGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTCAGAAGTTCAGCCCATTATCATCAAGGTGGGAGCATGGCAGCA  1079

seq1  TCCAGGCAGGCACAGTGCAAGAGGAACTGAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCAGGCACAGTGCAAGAGGAACTGAGAATTC  1115