BAC Information

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BAC

Clone NameB6Ng01-030N04
ChromosomeX (Build37)
Map Location 109,534,762 - 109,535,842
singlet/doubletsinglet
Overlap geneEG623341
Upstream geneRps6ka6, EG664791, D030011N01Rik, LOC100038989, Tex16, LOC622570, 4933403O08Rik, EG385407, Apool, Satl1
Downstream gene2010106E10Rik, Zfp711, Pof1b, LOC623412, EG623428, LOC100039112, Chm, EG664918, Dach2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-030N04.bB6Ng01-030N04.g
ACCDH860612DH860613
length1,066992
definitionDH860612|Mus musculus domesticus DNA, BAC clone: B6Ng01-030N04, 5' end.DH860613|Mus musculus domesticus DNA, BAC clone: B6Ng01-030N04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaacgaaacatatttcttgtgctttcaggcacagcttcactata
ttatcacaatccaatatgtagccactattagtatatgcagtgttagggta
acaaagttaagattcagagatattaaataacttgatatatgtcacacaac
tgaaagtgcaaataaaataagagacatccagttagcttagttatgttttt
cttaaaatcccaggaatgatataagtggttttgttgtttgttttacaaaa
tgaaaatatttatgcaacctattttatacatagatgacatatggattttg
cttactagaggagttacatgatgtctctatttgatacatttatgggtaag
atttaaagcgcagtttggcgatagagaagttgtttgagagtgtattggat
attggatcatagtttacataatttgacgacattttagttatcacgctttg
tcttttttcttagaaaagcattggatttgagtcttgtgcaactgaatgca
attgaaagggacacagatagatgttttcacacaaggttacttagtgcaat
ttatcgtaccttaacaatactgagtgatattgtatctgtcatgtactcac
tgataagtggatattagcccagaaacttaggatacccaagatataagata
caacttgccaaacgcataaaattcaagaagaacgaagaccaaagtgtgga
cactttgccccttcttagaaatgggaacaaaacacccatggaaggagtta
cagagacaaaatttggagctgtgacgaaaggatggaccatctagtgattg
ccatatgcagggatccatcccataatcagcttccaaatgctgacaccatt
gcatacactagcaagatttgctgaaaggaccagatatagctgtctcttgt
gagactaggccggggcctagcaacacagaagtggatgctcacagtcagct
acgtccccatggaggagctagagaattacccaggagcgaatggactgcaa
ccctatagttggaacaacatatgactaacaataccccgagctctttgttt
cagctgcaatgttcaa
gaattccttgaataactactaaccaaattaatttttcttgtagccactat
gggtggttccttatgggaggttgtaagttttggcttttgatacaaagacc
tgtggccaaggtatatatgcaagtcttacacaggagagttgacaaatagg
caaatgtttctattctgaacacaaaaagcattataatcattatattcctt
ggatgggtcagctaagttttgccagagtctaaagaatctccagcctttgt
aatgttttctgttgatcttgttggacaatagagttcttgtcaaagcttac
acactgaatgtgtcaaagaaaatacattggaatactataagtgcattctc
tttttattctttttatttatttcttttatatttttacttttttatttttt
tcatttccaaatttttttaatttggtatttttttatttatatttcaaatg
ctagcccaaaagtccccccataccctcacccccaatcccctcccctaccc
acccactcccacttctcagaagcatataaagtttgcatgtccaatgagcc
tctcttaacaatgatggccgactaggccatcttctgatacatatgcagct
agagacataagctctgggggtactggttagtttcatattgttgttccacc
tatagggttgcagacccctttagctcctttgggttctttgtctagctcct
ccattgggagccctgtgttccatccaattagctgaatgtgagcatccact
tctgtgtttgccagacacctgcatagcctcacaaaagacagctatatcag
ggttctttcagcaaaatcttgacagcatatgcaatggtgtcagcattgga
ggctgattataggatggatccccgggtgcagcagtctcagatgatccatc
ttttcgtcagctccaaactttgtctctgtaactcttcatgggtgttttgc
tccaatctgagaagggtaaagtgtcccactttggcttcattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_109534762_109535842
seq2: B6Ng01-030N04.b_45_1110

seq1  GAATTCAAACGAAACATATTTCTTGTGCTTTCAGGCACAGCTTCACTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACGAAACATATTTCTTGTGCTTTCAGGCACAGCTTCACTATA  50

seq1  TTATCACAATCCAATATGTAGCCACTATTAGTATATGCAGTGTTAGGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAATCCAATATGTAGCCACTATTAGTATATGCAGTGTTAGGGTA  100

seq1  ACAAAGTTAAGATTCAGAGATATTAAATAACTTGATATATGTCACACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTAAGATTCAGAGATATTAAATAACTTGATATATGTCACACAAC  150

seq1  TGAAAGTGCAAATAAAATAAGAGACATCCAGTTAGCTTAGTTATGTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTGCAAATAAAATAAGAGACATCCAGTTAGCTTAGTTATGTTTTT  200

seq1  CTTAAAATCCCAGGAATGATATAAGTGGTTTTGTTGTTTGTTTTACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATCCCAGGAATGATATAAGTGGTTTTGTTGTTTGTTTTACAAAA  250

seq1  TGAAAATATTTATGCAACCTATTTTATACATAGATGACATATGGATTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATTTATGCAACCTATTTTATACATAGATGACATATGGATTTTG  300

seq1  CTTACTAGAGGAGTTACATGATGTCTCTATTTGATACATTTATGGGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTAGAGGAGTTACATGATGTCTCTATTTGATACATTTATGGGTAAG  350

seq1  ATTTAAAGCGCAGTTTGGCGATAGAGAAGTTGTTTGAGAGTGTATTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGCGCAGTTTGGCGATAGAGAAGTTGTTTGAGAGTGTATTGGAT  400

seq1  ATTGGATCATAGTTTACATAATTTGACGACATTTTAGTTATCACGCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATCATAGTTTACATAATTTGACGACATTTTAGTTATCACGCTTTG  450

seq1  TCTTTTTTCTTAGAAAAGCATTGGATTTGAGTCTTGTGCAACTGAATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTCTTAGAAAAGCATTGGATTTGAGTCTTGTGCAACTGAATGCA  500

seq1  ATTGAAAGGGACACAGATAGATGTTTTCACACAAGGTTACTTAGTGCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAAGGGACACAGATAGATGTTTTCACACAAGGTTACTTAGTGCAAT  550

seq1  TTATCGTACCTTAACAATACTGAGTGATATTGTATCTGTCATGTACTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCGTACCTTAACAATACTGAGTGATATTGTATCTGTCATGTACTCAC  600

seq1  TGATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTGGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAGATA  650

seq1  CAACTTGCCAAACGCATAAAATTCAAGAAGAACGAAGACCAAAGTGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGCCAAACGCATAAAATTCAAGAAGAACGAAGACCAAAGTGTGGA  700

seq1  CACTTTGCCCCTTCTTAGAAATGGGAACAAAACACCCATGGAAGGAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGCCCCTTCTTAGAAATGGGAACAAAACACCCATGGAAGGAGTTA  750

seq1  CAGAGACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAAAATTTGGAGCTGTGACGAAAGGATGGACCATCTAGTGATTG  800

seq1  CCATATGCAGGGATCCATCCCATAATCAGCTTCCAAATGCTGACACCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCAGGGATCCATCCCATAATCAGCTTCCAAATGCTGACACCATT  850

seq1  GCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTT  900
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  GCATACACTAGCAAGA-TTTGCTGAAAGGA-CCAGATATAGCTGTCTCTT  898

seq1  GTGAGACTAGGCCGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGAGACTAGGCCGGGGCCTAGC-AACACAGAAGTGGATGCTCACAGTCA  947

seq1  GCTACGGCCCCCAATGGAGGAGCTAGAGAAATTACCCAAGGAGCGAAAGG  1000
      |||||| ||||  ||||||||||||||| |||||||| ||||||||| ||
seq2  GCTACGTCCCC--ATGGAGGAGCTAGAG-AATTACCC-AGGAGCGAATGG  993

seq1  GAACTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGTACCCCG  1050
        ||||||||||||||| ||||||||| ||||| ||||| || |||||| 
seq2  --ACTGCAACCCTATAGTTGGAACAAC-ATATG-ACTAA-CAATACCCC-  1037

seq1  GAGCTC-TTGTCTCTAGCTGCATATGTATCAA  1081
      |||||| |||| || ||||||| |||| ||||
seq2  GAGCTCTTTGTTTC-AGCTGCA-ATGT-TCAA  1066