BAC Information

Click to search

BAC

Clone NameB6Ng01-031A23
ChromosomeX (Build37)
Map Location 157,364,210 - 157,364,591
singlet/doubletsinglet
Overlap genenone
Upstream geneSh3kbp1, LOC667524, Pdha1, LOC100041403, LOC100041416, LOC100041427, Gpr64, Phka2, Ppef1, Rs1, Gja6
Downstream geneScml2, LOC414364, Prkaca-ps1, Rai2, Gm47, Nhs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-031A23.bB6Ng01-031A23.g
ACCDH860781DH860782
length1,223875
definitionDH860781|Mus musculus domesticus DNA, BAC clone: B6Ng01-031A23, 5' end.DH860782|Mus musculus domesticus DNA, BAC clone: B6Ng01-031A23, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttagttcagctctgagccccattttttagtggggttatttgatt
ttctggagcccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttgttgatagtgtcttttgccttgcagaaactttgcaacttta
tgaggtcccatttattcattctcgatcttactgcacaagctattgctgtt
ctattcaggaacttttcccctgtacccatatcttcaaggcttttttctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tacacttagatttgacatcagtacaaggagatagaaaaggatcaattcgc
attcttctacatgataaccgcaagttgtgccagcaccatttgttgaaaat
gctctcttttttccactggatggttttagctcccttgtcaaagatcaagt
gaccatagggttcatctctgggtcttcaattctgttccattggtctactt
gtctgtcactataccagtaccatgcagttttttatcacaattgatctcaa
gtacagctttaggccaggcatggtgattccaccagaggttcttttatcct
tgagaagagtttttgctatcctaggttttttgttattccagatgaattta
tagattactctttctaattcgttgaagaattgagttggaattttgatggg
gattgcattgaatctgtagattgcttttggcaagatagccaattttacaa
tgttgatcctgccaatccatgagcatgggagatctttccatcttctgaga
tcttctttaatttctttcttcagagacttcaagttcttatcatatagatc
tttcacttccttagttagagtccccgccaaggtattttatatatttctac
tattgaaagggtgttgtttccctaatttcttctcagctgttatccttgtg
taggaaaggtcattgacttggttgagtaattttatatccagctactttca
ccgaagcttgtttacaggataggagttcctcggtgaatttttaggatccc
ttatatatacatatctaacagtgcaaagggatattttgagctccttcttt
cattgcattcccctgaatcgagtgtctaattgctgcggcagagctcatca
gcacatagtgtagtaatcatgag
gaattcttcatagagttagaaagagcaattctcaaattcatttggaataa
caaaacaaaacaaagcaaaacaaaaaaccaaactaaaaccaaaacaaaaa
caaaaaaacccaggatagtgaaaactattcccaacaataaaagaactcct
gggggaatcaccatcgctgatctcaagctatactatagagcaatagttat
aaagaccatatggtattggtacagagacaggcaggtagatcaatggaata
gaattgaagacccagaaatgaacccacatacccatggtcacttgatcttt
cttttttttattattattattagatattttcctcatttacattttcaatg
ctatctcaaaggtcccccatacccaccccccaacccctacccacccactc
cccccttttggccctggcgttcccctgtactagggcatataaagtttgca
agtccaatgggcctctctttgcagtgatggctgactaggccatcttttga
tacatatgcagctaaagagaagagctcccgggtactggttagttcatatt
gttgttccacctatagggttgcagttccctttagctccttgggtaatttc
tctagctcctccattgttgatctttcaaaagaaggtaaaatcatccaatg
ggaaaaaagacagcattttcaaaaatgatgtgggttcaactggtggtctg
catgtagaagaatgcaaatagatccatttttagccccttgtacaatgttt
aagtccaaatggatcaaggacctccatgtaaaccagatacacttaatcta
acagaggagaaagtgaggaagagcctgaatacatgggtacaggcaatttt
ttctgaatagaacatcagtggctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_157364210_157364591
seq2: B6Ng01-031A23.g_120_577

seq1  -----AAAACAAACCAAAAA--CAA---AAAACCAAAACAAGGTTATAA-  39
           ||| |||| ||||||  |||   |||||||||||||    | || 
seq2  AAAACAAAGCAAAACAAAAAACCAAACTAAAACCAAAACAAAAACAAAAA  50

seq1  ---TCTAGACAGTCAAATGCAAACCGAACATT------------------  68
          |  || ||| |||   |  || |||| |                  
seq2  AACCCAGGATAGTGAAAACTATTCCCAACAATAAAAGAACTCCTGGGGGA  100

seq1  -TTAACTTTGGTATACTCTACCTACCCTCT------------------TC  99
       | | | | | |   ||| | |||  || |                   |
seq2  ATCACCATCGCTGATCTCAAGCTATACTATAGAGCAATAGTTATAAAGAC  150

seq1  CCT---TTATTG---------CAGG-AGCT-TTTAACTGCAACAGCTTTG  135
      | |    |||||         |||| || |   | | || || ||  |||
seq2  CATATGGTATTGGTACAGAGACAGGCAGGTAGATCAATGGAATAGAATTG  200

seq1  AA-------AAATAAATTCTTTT-----TTTTTA--TGGTGTATATTGTT  171
      ||       |||| ||  |   |     |  | |  || | | | || ||
seq2  AAGACCCAGAAATGAACCCACATACCCATGGTCACTTGATCTTTCTTTTT  250

seq1  TCT-TTTTTTTTATTACATATTTTCCTCAATTACATTTCCAATGCTATCT  220
      | | || || |||||| |||||||||||| |||||||| |||||||||||
seq2  TTTATTATTATTATTAGATATTTTCCTCATTTACATTTTCAATGCTATCT  300

seq1  CAAAAGTCCCC----CCCAC------TTCCCTACCCACTCATTCCCTTTT  260
      |||| ||||||    |||||        |||||||||| || ||||    
seq2  CAAAGGTCCCCCATACCCACCCCCCAACCCCTACCCACCCACTCCC----  346

seq1  TTTTTTTTTTTTTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAC  310
                   |||||||||||||||||||||||||| ||||||||| 
seq2  ----------CCCTTTTGGCCCTGGCGTTCCCCTGTACTAGGGCATATAA  386

seq1  AGTTTGCATGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCA  360
      |||||||| ||||||||||||||||||| |||||||||| ||||||||||
seq2  AGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGGCTGACTAGGCCA  436

seq1  TCTTTTGATACATATGCAGCTA  382
      ||||||||||||||||||||||
seq2  TCTTTTGATACATATGCAGCTA  458