BAC Information

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BAC

Clone NameB6Ng01-034J11
ChromosomeX (Build37)
Map Location 45,106,061 - 45,213,466
singlet/doubletdoublet
Overlap geneSmarca1
Upstream geneEG434775, LOC236775, LOC100040133, LOC100040145, EG624187
Downstream geneLOC676253, Ocrl, LOC270596, LOC665672, Apln, Xpnpep2, 1200013B08Rik, Zdhhc9, Utp14a, LOC637576, Bcorl1, Elf4, Aifm1, Rab33a, Suhw3, Slc25a14, Gpr119, Rbmx2, LOC665752, Gm595
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034J11.bB6Ng01-034J11.g
ACCDH863297DH863298
length938923
definitionDH863297|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J11, 5' end.DH863298|Mus musculus domesticus DNA, BAC clone: B6Ng01-034J11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,106,061 - 45,107,004)(45,212,541 - 45,213,466)
sequence
gaattcatcattttctgccctcctcattcttttctttgaatcagatacta
tctttaattcttttaatcattcgcatcagaagtcttcctgagtttccttt
acatctgttacctactagctcaagataattttttactgccataattttaa
ttttgaaaatactgtaaccttaaagaatccaggtattctattccaaggct
cttcttgctcccagtgaacccaccccacccccattttatcatattctact
ttcatggtgagaatttttacccgaggactgttttccaatgaaggcagtgt
attgtcaataaagcaaagaaagaataaatacactgcttttattttaataa
ggtttaggaatgaaaagagaccaatagaaaatggagcaaatacaaagtgt
ttgctattagaagtaaattgaagtggattcttaatatgtgtttagaatgg
caagaattggaagagaaaataagtttatgatgacctagtctaagttgaga
agtacaggcaagccttcacaggcaaactatattcttttagtcgttttggt
agactaccacaatgaatccagccaagcaatgtttgttcatgcatttttac
attatgaaagactgggtatctggcataataccgacagtttggaatcgtgg
ggggacatttctcaccctggctaagttaccttcactaacaatggcactgt
tttctcatgttaaattctttccaaggtcaacggcactcagtgctgcagat
gaattttcaaaggggtacatgaatagtttccaaattttaccctaataatt
ggctccaatgcttctgatctgtaatattgcttaataaatagccactttga
gctctgaagtcacactgaaggtacccacaagcctgagactttcttgaaac
aacggaaatcaattcagcaattcagagtcattttatga
gaattctcctctagtctaggaatgcaaagattacaatgatggctttgctt
tggagaagctcacagtgtagtgaggaagaagagttgcagttcgatgtgct
aagtgcacttcatcatgctgttgagaaaatgggaattgggatcgtcttta
cagtgatgatattggaagtgaagactggagtttgaaagcaggagtgagcc
atcaaaaatgcaacaggtgtgcttgtctagggcagtgaaacagggaccac
agcgcaggcatttatgggatgtaatgtagtgtggcatttcgtgaatttgg
taaggatagatactgccatattatgcaccattatgcaccaaattatggaa
ggtctttaaaaccatacttcaaagacttttattttggatatagaggagtt
aaagaagacttgatgataggaagtaacattattagatgtcaggaggataa
cgctggaagcactctgtgggaatgagagagtaaaaccagaagccaaggtg
aagatagttgcagtaataatccagagagagatcatatggaccattgtaga
tccttgggacaaagaaaaggcagaatataagtcatggtagtatatgtata
agatttaaaaaaaacattatttatttgtttatatcccaaacgctgctcct
cttccaggtccctccctcaccaagtcccctcccctgatccctccttccct
tctctgagcattaggttcccccctgggtatcctctcacctggtacatcac
gtctctgcagattaggtgcatcctttcccactgaagctagacagggcagc
catgaagactgagctacctgtctgctacctatgtgccagggggcctcaat
tccagccagtggaagttctacaacagagttcagattctgagaagtcccgg
gagttcaggttggttgccttagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_45106061_45107004
seq2: B6Ng01-034J11.b_44_981

seq1  GAATTCATCATTTTCTGCCCTCCTCATTCTTTTCTTTGAATCAGATACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATTTTCTGCCCTCCTCATTCTTTTCTTTGAATCAGATACTA  50

seq1  TCTTTAATTCTTTTAATCATTCGCATCAGAAGTCTTCCTGAGTTTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATTCTTTTAATCATTCGCATCAGAAGTCTTCCTGAGTTTCCTTT  100

seq1  ACATCTGTTACCTACTAGCTCAAGATAATTTTTTACTGCCATAATTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGTTACCTACTAGCTCAAGATAATTTTTTACTGCCATAATTTTAA  150

seq1  TTTTGAAAATACTGTAACCTTAAAGAATCCAGGTATTCTATTCCAAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAATACTGTAACCTTAAAGAATCCAGGTATTCTATTCCAAGGCT  200

seq1  CTTCTTGCTCCCAGTGAACCCACCCCACCCCCATTTTATCATATTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCTCCCAGTGAACCCACCCCACCCCCATTTTATCATATTCTACT  250

seq1  TTCATGGTGAGAATTTTTACCCGAGGACTGTTTTCCAATGAAGGCAGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTGAGAATTTTTACCCGAGGACTGTTTTCCAATGAAGGCAGTGT  300

seq1  ATTGTCAATAAAGCAAAGAAAGAATAAATACACTGCTTTTATTTTAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAATAAAGCAAAGAAAGAATAAATACACTGCTTTTATTTTAATAA  350

seq1  GGTTTAGGAATGAAAAGAGACCAATAGAAAATGGAGCAAATACAAAGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGGAATGAAAAGAGACCAATAGAAAATGGAGCAAATACAAAGTGT  400

seq1  TTGCTATTAGAAGTAAATTGAAGTGGATTCTTAATATGTGTTTAGAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTAGAAGTAAATTGAAGTGGATTCTTAATATGTGTTTAGAATGG  450

seq1  CAAGAATTGGAAGAGAAAATAAGTTTATGATGACCTAGTCTAAGTTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTGGAAGAGAAAATAAGTTTATGATGACCTAGTCTAAGTTGAGA  500

seq1  AGTACAGGCAAGCCTTCACAGGCAAACTATATTCTTTTAGTCG-TTTGGT  549
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTACAGGCAAGCCTTCACAGGCAAACTATATTCTTTTAGTCGTTTTGGT  550

seq1  AGACTACCACAATGAATCCAGCCAAGCAATGTTTGTTCATGCATTTTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGACTACCACAATGAATCCAGCCAAGCAATGTTTGTTCATGCATTTTTAC  600

seq1  A-TATGAAAGACT-GGTATCTGGCATAATACCGACAGTTTGGAATCGT-G  646
      | ||||||||||| |||||||||||||||||||||||||||||||||| |
seq2  ATTATGAAAGACTGGGTATCTGGCATAATACCGACAGTTTGGAATCGTGG  650

seq1  GGGGACA-TTCTCACCCTGGCTAAGTTACCTTCACTAACAATGGCACTG-  694
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGGACATTTCTCACCCTGGCTAAGTTACCTTCACTAACAATGGCACTGT  700

seq1  TTTCTCATGTTAAATTCTTTCCAAGGTCAACGGCACTCAGTGCTGCAGAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATGTTAAATTCTTTCCAAGGTCAACGGCACTCAGTGCTGCAGAT  750

seq1  GAATTTCAAAAGGGGTACATGAATAGTTTCCAAATTTTACCCTAATAA-T  793
      ||||||  |||||||||||||||||||||||||||||||||||||||| |
seq2  GAATTTTCAAAGGGGTACATGAATAGTTTCCAAATTTTACCCTAATAATT  800

seq1  GGCTCCAATGCTTTCTGATCTGTAATATTGCTTAATAATTAGCCACCTTT  843
      ||||||||||| |||||||||||||||||||||||||| |||||| ||||
seq2  GGCTCCAATGC-TTCTGATCTGTAATATTGCTTAATAAATAGCCA-CTTT  848

seq1  GAGCTCTG-AGTCACACTGAGGGTACCCACAGCACTGAGACTTTTTCTTT  892
      |||||||| ||||||||||| ||||||||||   |||||||  |||||| 
seq2  GAGCTCTGAAGTCACACTGAAGGTACCCACAAGCCTGAGAC--TTTCTT-  895

seq1  TGAAAACAAACGGGAAATCAATTTCAGCCAATTCAGTAGTTCCATTTTAT  942
         ||||||   ||||||||| ||||| |||||||| |||  ||||||||
seq2  --GAAACAA--CGGAAATCAA-TTCAG-CAATTCAG-AGT--CATTTTAT  936

seq1  GA  944
      ||
seq2  GA  938

seq1: chrX_45212541_45213466
seq2: B6Ng01-034J11.g_69_991 (reverse)

seq1  ACTAAGACAACAAACCTGAACTCCCGGGAGCTCTCAGAATCTGAACTCTG  50
      |||||| |||| |||||||||||||||||  |||||||||||||||||||
seq2  ACTAAGGCAACCAACCTGAACTCCCGGGACTTCTCAGAATCTGAACTCTG  50

seq1  TTGGTAGAACATACACTGGCTGGAAATGAGGCCCCCTGGCACATAGGTAG  100
      || ||||||| | |||||||||||| ||||||||||||||||||||||||
seq2  TT-GTAGAACTTCCACTGGCTGGAATTGAGGCCCCCTGGCACATAGGTAG  99

seq1  CAGACAGGTAGCTCAGTCTTCATGGCTGCCCTGTCTAGCTTCAGTGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGGTAGCTCAGTCTTCATGGCTGCCCTGTCTAGCTTCAGTGGGAA  149

seq1  AGGATGCACCTAATCTGGCAGAGACGTGATGTACCAGGGTGAGAGGATAC  200
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  AGGATGCACCTAATCT-GCAGAGACGTGATGTACCA-GGTGAGAGGATAC  197

seq1  CCAGGGGGGAACCTAATGCTCAGAGAAGGGAAGGAGGGATCAGGGGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGGGAACCTAATGCTCAGAGAAGGGAAGGAGGGATCAGGGGAGGG  247

seq1  GACTTGGTGAGGGAGGGACCTGGAAGAGGAGCAGCGTTTGGGATATAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGTGAGGGAGGGACCTGGAAGAGGAGCAGCGTTTGGGATATAAAC  297

seq1  AAATAAATAATGTTTTTTTTAAATCTTATACATATACTACCATGACTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAATGTTTTTTTTAAATCTTATACATATACTACCATGACTTAT  347

seq1  ATTCTGCCTTTTCTTTGTCCCAAGGATCTACAATGGTCCATATGATCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCTTTTCTTTGTCCCAAGGATCTACAATGGTCCATATGATCTCT  397

seq1  CTCTGGATTATTACTGCAACTATCTTCACCTTGGCTTCTGGTTTTACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATTATTACTGCAACTATCTTCACCTTGGCTTCTGGTTTTACTCT  447

seq1  CTCATTCCCACAGAGTGCTTCCAGCGTTATCCTCCTGACATCTAATAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCCACAGAGTGCTTCCAGCGTTATCCTCCTGACATCTAATAATG  497

seq1  TTACTTCCTATCATCAAGTCTTCTTTAACTCCTCTATATCCAAAATAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCCTATCATCAAGTCTTCTTTAACTCCTCTATATCCAAAATAAAA  547

seq1  GTCTTTGAAGTATGGTTTTAAAGACCTTCCATAATTTGGTGCATAATGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAAGTATGGTTTTAAAGACCTTCCATAATTTGGTGCATAATGGT  597

seq1  GCATAATATGGCAGTATCTATCCTTACCAAATTCACGAAATGCCACACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATATGGCAGTATCTATCCTTACCAAATTCACGAAATGCCACACTA  647

seq1  CATTACATCCCATAAATGCCTGCGCTGTGGTCCCTGTTTCACTGCCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATCCCATAAATGCCTGCGCTGTGGTCCCTGTTTCACTGCCCTAG  697

seq1  ACAAGCACACCTGTTGCATTTTTGATGGCTCACTCCTGCTTTCAAACTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCACACCTGTTGCATTTTTGATGGCTCACTCCTGCTTTCAAACTCC  747

seq1  AGTCTTCACTTCCAATATCATCACTGTAAAGACGATCCCAATTCCCATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCACTTCCAATATCATCACTGTAAAGACGATCCCAATTCCCATTT  797

seq1  TCTCAACAGCATGATGAAGTGCACTTAGCACATCGAACTGCAACTCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACAGCATGATGAAGTGCACTTAGCACATCGAACTGCAACTCTTCT  847

seq1  TCCTCACTACACTGTGAGCTTCTCCAAAGCAAAGCCATCATTGTAATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACTACACTGTGAGCTTCTCCAAAGCAAAGCCATCATTGTAATCTT  897

seq1  TGCATTCCTAGACTAGAGGAGAATTC  926
      ||||||||||||||||||||||||||
seq2  TGCATTCCTAGACTAGAGGAGAATTC  923