BAC Information

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BAC

Clone NameB6Ng01-035F23
ChromosomeX (Build37)3 (Build37)
Map Location 86,775,545 - 86,776,06127,427,331 - 27,428,217
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667891, EG245506, LOC667911, LOC100041707, EG436213, LOC667919, LOC100041727, LOC667934, Pet2, EG629419
Downstream gene4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215, Gm370, LOC194615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035F23.bB6Ng01-035F23.g
ACCDH863857DH863858
length987885
definitionDH863857|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F23, 5' end.DH863858|Mus musculus domesticus DNA, BAC clone: B6Ng01-035F23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(86,775,545 - 86,776,061)(27,427,331 - 27,428,217)
sequence
gaattctctggtggaatttttggggtcacttatatatactatcatatcat
ctgcaaatagtgatattttgacatcttcctttccaagttgtatccccttg
atctccttttgttgtcgaattgctctggctaggacttcaagtaatatatt
gaataggtagggagaaagtggacagccttgtctagtccctaattttagtg
ggactgctttgagtttttctccatttagtttgatgttggctactggtttg
ctgtagaatgctttcattacgtttagctatgggccttgaattcccgatct
tttcaaaacttttatcatgaaggggtgttgaattttgtcaaatgctttct
cagcatctaataagatgatcatgtggtttttgtctttgagtttgtttata
tagtggattacgttgatggatttccgtatattaaaccatccctgcatctc
tgggatgaaacctacttggtcatgatggatgattgttttgatgtgttctt
ggattcggtttttgaggattttattgagtaattttgcatcgatattcata
agggaaattggtctgaagttctttttctttgttggatctttgtgtggttt
aggtatcagagtaattgtggcttcatagaatgaattgggtagagtacctt
ctgtttctattttgtggaatagtttgaggaaagttggaattaaattaggc
ttctttgaaagtctaatagaactctgcactaaatccatctggtcctgggc
ttttttggttgggaaactatgactgcttctatttctttagggggaaatgg
gactgttagatagttaactgatcctgatttacttggtacttggtatctgt
taggaagtgtccatttcatccagttttcagtttgtgagtatagtcttgta
taggcctgatgatgtttggattcctcaggtctgtggtagtctccttttca
ttctgatttttaaatagaaactgtccctgtgccctct
gtgttcctcctgttcctcccgcttcttgactctggcttgtctgtgggcct
gaggagcgactttaggccaggccagtttgactctgagcccactcagactg
tggagcactttagatgactttgttggagggacagttaactggccctaacc
tcaggtgacaccatctttcttctcccccttgtacagtagagtaaatggct
gtgacatctgagatgttctagggcagtaagctaactagataattagttca
caaagacttttaccatgggtaccatatactgtcactttggccatctgcag
tcacaccatctgcctggatgcaccacatgtgcaggtggggtgccatgcca
tggagcctgtactgtagattcagaagccatttctattactctcggcggga
accttagcattcccgcagatttcctattgctaggtcaacgttgtcattgt
tactgtatctcctccttccactggggcgtgtgctgggcacaccacatgaa
ccggcccactgagaaggcagtgtgggctgcatcacagtggaacaactgca
gtgaatcctgcagttctgcccttactgtgcatctccgttgtgatcagcca
tcactctcagccaggcacacagtgccagtaggctgttaatttgctttcag
tttctggtactgtagtgaggccttaagtttctgtgacataggcaacctag
ggtgtgaactagaaaaggtccctgggaaaaagcagtaccactgccttagt
gtgtgagttttacacagtaatgggcactgatgctcagggtgacttctagc
tctagtgttttccctggtgtggaacttgcatttaggccgctttctttccc
cctcacccttctaaatagtactgctgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_86775545_86776061
seq2: B6Ng01-035F23.b_572_1027 (reverse)

seq1  AGAGGGCACAGGGACAGAATCCTAATTAACAAAATCAGAAATGAAAAGGG  50
      |||||||||||||||||  | ||| |||  |||||||| |||||||| ||
seq2  AGAGGGCACAGGGACAG-TTTCTATTTA--AAAATCAG-AATGAAAA-GG  45

seq1  AGACATAACAACAGATCTTTGAAGAAATCCAAAGCAACATCAGATCCTTC  100
      ||||   || ||||| ||    || |||||||| || ||||||      |
seq2  AGAC--TACCACAGACCT---GAGGAATCCAAA-CATCATCAG----GCC  85

seq1  TACAAAAGGCTATACTCAAAAAAAAAAAAAACAAACAAACAAAAAACAAA  150
      || | ||| ||||||||                                 
seq2  TATACAAGACTATACTC---------------------------------  102

seq1  AAAACAAACAAAAAAATTGGAGAACCTGGATGAAATGGACAAATTTCTAG  200
         ||||||  ||||          ||||||||||||||| | || ||| 
seq2  ---ACAAACTGAAAA----------CTGGATGAAATGGAC-ACTTCCTA-  137

seq1  ACAAATACCAGGTACCCAAGTTAAATCAGGATCAAGTTAACGATTTAAAA  250
      ||| |||||| ||| ||||| |||||||||||| ||||||| || ||| |
seq2  ACAGATACCAAGTA-CCAAG-TAAATCAGGATC-AGTTAACTATCTAACA  184

seq1  GTCCCATAT-CCCCTAAAGAAATAGAAGCAGTCATTAATAGTCTCCCAAT  299
      ||||||| | |||||||||||||||||||||||    ||||| |||||| 
seq2  GTCCCATTTCCCCCTAAAGAAATAGAAGCAGTC----ATAGTTTCCCAAC  230

seq1  CAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTT  349
      ||||||||||||||||||||||| |||||||||||||||||| |||| ||
seq2  CAAAAAAGCCCAGGACCAGATGGATTTAGTGCAGAGTTCTATTAGACTTT  280

seq1  CAAAGAAG----ATCTAATTCCAGTTCTGCACAAACTATTCCACAAAATA  395
      ||||||||    || ||||||||  | | | |||||||||||||||||||
seq2  CAAAGAAGCCTAATTTAATTCCAACTTTCCTCAAACTATTCCACAAAATA  330

seq1  GAAGTAGAAGGTACTCTACCCAACTCATTCTATTAATCCACAATTACTCT  445
      |||  |||||||||||||||||| ||||||||| || |||||||||||||
seq2  GAAACAGAAGGTACTCTACCCAATTCATTCTATGAAGCCACAATTACTCT  380

seq1  GATACCTAAACTACAGAAAGTTCC----AAGATAGAGAACTTTAGACCAA  491
      ||||||||||| ||| |||| |||    |||| | ||||||| |||||||
seq2  GATACCTAAACCACACAAAGATCCAACAAAGAAAAAGAACTTCAGACCAA  430

seq1  TTTCCCTTTTGAATATAGATGCAAAA  517
      |||||||| ||||||| |||||||||
seq2  TTTCCCTTATGAATATCGATGCAAAA  456

seq1: chr3_27427331_27428217
seq2: B6Ng01-035F23.g_76_960 (reverse)

seq1  ACACACACACAAGCAGTTACTATTTAGAAGGGTGAGGGGGAAAGAAAGCG  50
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  ACACACACAC-AGCAG-TACTATTTAGAAGGGTGAGGGGGAAAGAAAGCG  48

seq1  GCCTAAATGCAAGTTCCACACCAGAGAAAACACTAGAGCTAGAGTCCACT  100
      |||||||||||||||||||||||| ||||||||||||||||||   ||| 
seq2  GCCTAAATGCAAGTTCCACACCAGGGAAAACACTAGAGCTAGAAGTCAC-  97

seq1  CCTGAGCATCAGTGCCCATTACTGTGTAAAACTCACACACTAAGGCAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCATCAGTGCCCATTACTGTGTAAAACTCACACACTAAGGCAGTG  147

seq1  GTACTGCTTTTTCCCAGGGACCTTTTCTAGTTCACACCCTAGGTTGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCTTTTTCCCAGGGACCTTTTCTAGTTCACACCCTAGGTTGCCTA  197

seq1  TGTCACAGAAACTTAAGGCCTCACTACAGTACCAGAAACTG-AAGCAAAT  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTCACAGAAACTTAAGGCCTCACTACAGTACCAGAAACTGAAAGCAAAT  247

seq1  TAACAGCCTACTGGCACTGTGTGCCTGGCTGAGAGTGATGGCTGATCACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCTACTGGCACTGTGTGCCTGGCTGAGAGTGATGGCTGATCACA  297

seq1  ACGGAGATGCACAGTAAGGGCAGAACTGCAGGATTCACTGCAGTTGTTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGATGCACAGTAAGGGCAGAACTGCAGGATTCACTGCAGTTGTTCC  347

seq1  ACTGTGATGCAGCCCACACTGCCTTCTCAGTGGGCCGGTTCATGTGGTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGATGCAGCCCACACTGCCTTCTCAGTGGGCCGGTTCATGTGGTGT  397

seq1  GCCCAGCACACGCCCCAGTGGAAGGAGGAGATACAGTAACAATGACAACG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCACACGCCCCAGTGGAAGGAGGAGATACAGTAACAATGACAACG  447

seq1  TTGACCTAGCAATAGGAAATCTGCGGGAATGCTAAGGTTCCCGCCGAGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTAGCAATAGGAAATCTGCGGGAATGCTAAGGTTCCCGCCGAGAG  497

seq1  TAATAGAAATGGCTTCTGAATCTACAGTACAGGCTCCATGGCATGGCACC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAAATGGCTTCTGAATCTACAGTACAGGCTCCATGGCATGGCACC  547

seq1  CCACCTGCACATGTGGTGCATCCAGGCAGATGGTGTGACTGCAGATGGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCACATGTGGTGCATCCAGGCAGATGGTGTGACTGCAGATGGCC  597

seq1  AAAGTGACAGTATATGGTACCCATGGTAAAAGTCTTTGTGAACTAATTAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGACAGTATATGGTACCCATGGTAAAAGTCTTTGTGAACTAATTAT  647

seq1  CTAGTTAGCTTACTGCCCTAGAACATCTCAGATGTCACAGCCATTTACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTAGCTTACTGCCCTAGAACATCTCAGATGTCACAGCCATTTACTC  697

seq1  TACTGTACAAGGGGGAGAAGAAAGATGGTGTCACCTGAGGTTAGGGCCAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTACAAGGGGGAGAAGAAAGATGGTGTCACCTGAGGTTAGGGCCAG  747

seq1  TTAACTGTCCCTCCAACAAAGTCATCTAAAGTGCTCCACAGTCTGAGTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTCCCTCCAACAAAGTCATCTAAAGTGCTCCACAGTCTGAGTGG  797

seq1  GCTCAGAGTCAAACTGGCCTGGCCTAAAGTCGCTCCTCAGGCCCACAGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGTCAAACTGGCCTGGCCTAAAGTCGCTCCTCAGGCCCACAGAC  847

seq1  AAGCCAGAGTCAAGAAGCGGGAGGAACAGGAGGAACAC  887
      ||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGAGTCAAGAAGCGGGAGGAACAGGAGGAACAC  885