BAC Information

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BAC

Clone NameB6Ng01-036D15
ChromosomeX (Build37)
Map Location 56,259,359 - 56,285,834
singlet/doubletdoublet
Overlap genenone
Upstream geneZic3, LOC631581, LOC631621, 4930550L24Rik
Downstream geneFgf13, F9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036D15.bB6Ng01-036D15.g
ACCDH864471DH864472
length1,085910
definitionDH864471|Mus musculus domesticus DNA, BAC clone: B6Ng01-036D15, 5' end.DH864472|Mus musculus domesticus DNA, BAC clone: B6Ng01-036D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,259,359 - 56,260,450)(56,284,901 - 56,285,834)
sequence
gaattcttcagatacacgaggctgacttcaaatgtgtagctatcctccta
ccactgcctcccaatgctgggattaaagacgtgtgccatcacataagaac
aatactttaatgtacctctcttaatatcatgctagtagagctctgaaaac
tctaacctttcaagatctctaggtcactctccttatgcaattgttcatgt
gtaaaaccaagcttagtggaatgttgtttgtcctctgagaaagtagtatc
acaaatattgggctattggattactaaatgatgatttatgaatttttggt
atttatgtaaaggaagggaacaaaacatgaaatgtaatcaaaaatttctg
ggccttgttttatatcctaagacaagtttgattattaggaagatgagcta
ctgaatatatacaaagagagtggaccgggcagtattgaagtgttgcttgc
atcccacattttctaaatgaagagaacatcctcttttcagtgtcctaaac
atgaaagtaaagctatgaaagtaaaacctggaattaggcatcaagactac
catcttattagaatacaatatctaagagatcatgtatactataatctgag
aaacaataaaacaaataagtttcaatctccctggaaagttgtaactttca
gatgtttaaaatgaaatacaaacctcacatgtgttgaaaaactcttatga
gtgaaatattaatgttatcattagcagaaagtgatctttgttcaaagtgt
ttgccaaacagcttcttccttgtatcatgaagaacagctactataccaag
tactgtactgtttgattatatatttttttaatcattcacattgacacaaa
agaaaacagaagcttgaaagggttaatacgtccttcatgtcaggagagca
aaaactacaggggaaaactgaaggcagtcttttccaataaagaatgccca
tacccagtcacatgaataatttctccagcatcagtttcagagaatccact
gacagtgcctcacttttgtttctagtagaagacctctatgaaacagaaac
ttctgttttgttttgtgtttactaaattacttaaa
gaattcccaaaatttccctcagaaagacttataccttcattaagaataat
taatataaatgtacaagaaattcatgcaaattaggaagaacaaaatggaa
tgtgcttaataaggttaatgcatggaaagactaaaaaaattacattatac
agattgagcatgttatacttagaaacttaagaaaatatgcacatatatgc
agcatcaattaatgaaaatagaggttatgagcatgaaaaggaacaagtag
ggatatatgagtgagttcagagattaaaaagggggaatgatgcattaata
ttaatcttaaaaattaaaataaataagttctggaaagaacaacatgagtg
agtaatataacaggaacaaatgatcaactgttagtaatttgaaatatgga
taatggaacagcacagaatgccactttctatgtgtatgatcacccaaacc
ttgaaaccagaatattatgtaacactagaataggatgtacataatttaaa
tcctcatggatgctcatgttatatgtaaagtaatgtaatgaagctattat
gcaaagtcatttaaaaatttttagtgtaaatagaaatatgcatccccctg
gacccattccttagtatggagtccagtgaaattcttacgtgtccactgga
gcagtgttaggaaagtatttgcctaaatatatgcaaatcaagaaatatag
aattaaatgtgaacctgtaattatagaatatcttatagagcaaaaaaaat
tgattggaataatttatacacagaaagataaattataaaatatgttgttt
ttctcacatagacactaaatattaatatgtggatagtaagtatgtgaagt
gattgcagatcctcacatgtaatatttagttttttataaataccttattt
taaagttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_56259359_56260450
seq2: B6Ng01-036D15.b_44_1128

seq1  GAATTCTTCAGATACACGAGGCTGACTTCAAATGTGTAGCTATCCTCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGATACACGAGGCTGACTTCAAATGTGTAGCTATCCTCCTA  50

seq1  CCACTGCCTCCCAATGCTGGGATTAAAGACGTGTGCCATCACATAAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGCCTCCCAATGCTGGGATTAAAGACGTGTGCCATCACATAAGAAC  100

seq1  AATACTTTAATGTACCTCTCTTAATATCATGCTAGTAGAGCTCTGAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTAATGTACCTCTCTTAATATCATGCTAGTAGAGCTCTGAAAAC  150

seq1  TCTAACCTTTCAAGATCTCTAGGTCACTCTCCTTATGCAATTGTTCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCTTTCAAGATCTCTAGGTCACTCTCCTTATGCAATTGTTCATGT  200

seq1  GTAAAACCAAGCTTAGTGGAATGTTGTTTGTCCTCTGAGAAAGTAGTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACCAAGCTTAGTGGAATGTTGTTTGTCCTCTGAGAAAGTAGTATC  250

seq1  ACAAATATTGGGCTATTGGATTACTAAATGATGATTTATGAATTTTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATTGGGCTATTGGATTACTAAATGATGATTTATGAATTTTTGGT  300

seq1  ATTTATGTAAAGGAAGGGAACAAAACATGAAATGTAATCAAAAATTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTAAAGGAAGGGAACAAAACATGAAATGTAATCAAAAATTTCTG  350

seq1  GGCCTTGTTTTATATCCTAAGACAAGTTTGATTATTAGGAAGATGAGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGTTTTATATCCTAAGACAAGTTTGATTATTAGGAAGATGAGCTA  400

seq1  CTGAATATATACAAAGAGAGTGGACCGGGCAGTATTGAAGTGTTGCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATATATACAAAGAGAGTGGACCGGGCAGTATTGAAGTGTTGCTTGC  450

seq1  ATCCCACATTTTCTAAATGAAGAGAACATCCTCTTTTCAGTGTCCTAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACATTTTCTAAATGAAGAGAACATCCTCTTTTCAGTGTCCTAAAC  500

seq1  ATGAAAGTAAAGCTATGAAAGTAAAACCTGGAATTAGGCATCAAGACTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTAAAGCTATGAAAGTAAAACCTGGAATTAGGCATCAAGACTAC  550

seq1  CATCTTATTAGAATACAATATCTAAGAGATCATGTATACTATAATCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTATTAGAATACAATATCTAAGAGATCATGTATACTATAATCTGAG  600

seq1  AAACAATAAAACAAATAAGTTTCAATCTCCCTGGAAAGTTGTAACTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATAAAACAAATAAGTTTCAATCTCCCTGGAAAGTTGTAACTTTCA  650

seq1  GATGTTTAAAATGAAATACAAACCTCACATGTGTTGAAAAACTCTTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTAAAATGAAATACAAACCTCACATGTGTTGAAAAACTCTTATGA  700

seq1  GTGAAATATTAATGTTATCATTAGCAGAAAGTGATCTTTGTTCAAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATATTAATGTTATCATTAGCAGAAAGTGATCTTTGTTCAAAGTGT  750

seq1  TTGCCAAACAGCTTCTTCCTTGTATCATGAAGAACAGCTACTATACCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAACAGCTTCTTCCTTGTATCATGAAGAACAGCTACTATACCAAG  800

seq1  TACTGTACTGTTTGATTATATATTTTTTTAATCATTCACATTGACACAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTACTGTTTGATTATATATTTTTTTAATCATTCACATTGACACAAA  850

seq1  AGAAAACAGAAGCTTGAAAGGTTAAATAACGTCCTTCATGTCA-GAGAGC  899
      ||||||||||||||||||||| | ||| ||||||||||||||| ||||||
seq2  AGAAAACAGAAGCTTGAAAGGGTTAAT-ACGTCCTTCATGTCAGGAGAGC  899

seq1  AAAAACTAACAGAGAAATACTGAAGGCAAGTCTTTCCAAATAAAGAATGC  949
      ||||||| |||| | || ||||||||| ||||||| | ||||||||||||
seq2  AAAAACT-ACAGGGGAAAACTGAAGGC-AGTCTTTTCCAATAAAGAATGC  947

seq1  CCATACCCAGTCACATGAATAATTTCCTCCAGCATCAGTTTTCAGAGAAT  999
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  CCATACCCAGTCACATGAATAATTT-CTCCAGCATCAG-TTTCAGAGAAT  995

seq1  CCCACTGACAGTGCCTCAC-TATGTTTCTAGTTAAGAAAGGAACTCTATG  1048
       |||||||||||||||||| | ||||||||||  ||||  || |||||||
seq2  -CCACTGACAGTGCCTCACTTTTGTTTCTAGT--AGAA--GACCTCTATG  1040

seq1  AAACAGACACTTCTTGTTTTTTGTTTTTGTTTGTT---TTACTTAAA  1092
      ||||||| ||||| |||||| | ||| |||||  |   |||||||||
seq2  AAACAGAAACTTC-TGTTTTGT-TTTGTGTTTACTAAATTACTTAAA  1085

seq1: chrX_56284901_56285834
seq2: B6Ng01-036D15.g_68_977 (reverse)

seq1  AAAAACTTTTAGAAATAATGTAATTTATAAAAAACTAAAATAATCTACAT  50
      |||||||||   |||||| || |||||||||||||| |||||   |||| 
seq2  AAAAACTTT--AAAATAAGGT-ATTTATAAAAAACT-AAATA--TTACA-  43

seq1  TGTGAGGATCTTGCCAATCAACTTTTCACATACTTACCTATTCACAATAT  100
      |||||||||||   ||||||    |||||||||||| |||| ||| ||| 
seq2  TGTGAGGATCT--GCAATCA---CTTCACATACTTA-CTATCCAC-ATA-  85

seq1  TTATTATTTAGTGTTCTATGTTGAGAAAAACAACATATTTTTATATTTTA  150
      ||| ||||||||| |||||| |||||||||||||||| ||||||| ||||
seq2  TTAATATTTAGTG-TCTATG-TGAGAAAAACAACATA-TTTTATAATTTA  132

seq1  TTCTTTTCTTGTGTATAAAATTATTCCAATCAATTTTTTTTTGCTTCTAT  200
       |||||   ||||||| |||||||||||||||| |||||||||| |||||
seq2  -TCTTT--CTGTGTAT-AAATTATTCCAATCAA-TTTTTTTTGC-TCTAT  176

seq1  AAGATATTCTATAATTACAGGTTCACATTTAATTCTATATTTCTTGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTCTATAATTACAGGTTCACATTTAATTCTATATTTCTTGATTT  226

seq1  GCATATATTTAGGCAAATACTTTCCTAACACTGCTCCAGTGGACACGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATATTTAGGCAAATACTTTCCTAACACTGCTCCAGTGGACACGTAA  276

seq1  GAATTTCACTGGACTCCATACTAAGGAATGGGTCCAGGGGGATGCATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCACTGGACTCCATACTAAGGAATGGGTCCAGGGGGATGCATATT  326

seq1  TCTATTTACACTAAAAATTTTTAAATGACTTTGCATAATAGCTTCATTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTACACTAAAAATTTTTAAATGACTTTGCATAATAGCTTCATTAC  376

seq1  ATTACTTTACATATAACATGAGCATCCATGAGGATTTAAATTATGTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTACATATAACATGAGCATCCATGAGGATTTAAATTATGTACAT  426

seq1  CCTATTCTAGTGTTACATAATATTCTGGTTTCAAGGTTTGGGTGATCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCTAGTGTTACATAATATTCTGGTTTCAAGGTTTGGGTGATCATA  476

seq1  CACATAGAAAGTGGCATTCTGTGCTGTTCCATTATCCATATTTCAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGAAAGTGGCATTCTGTGCTGTTCCATTATCCATATTTCAAATTA  526

seq1  CTAACAGTTGATCATTTGTTCCTGTTATATTACTCACTCATGTTGTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGTTGATCATTTGTTCCTGTTATATTACTCACTCATGTTGTTCTT  576

seq1  TCCAGAACTTATTTATTTTAATTTTTAAGATTAATATTAATGCATCATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACTTATTTATTTTAATTTTTAAGATTAATATTAATGCATCATTC  626

seq1  CCCCTTTTTAATCTCTGAACTCACTCATATATCCCTACTTGTTCCTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTTAATCTCTGAACTCACTCATATATCCCTACTTGTTCCTTTTC  676

seq1  ATGCTCATAACCTCTATTTTCATTAATTGATGCTGCATATATGTGCATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATAACCTCTATTTTCATTAATTGATGCTGCATATATGTGCATAT  726

seq1  TTTCTTAAGTTTCTAAGTATAACATGCTCAATCTGTATAATGTAATTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAGTTTCTAAGTATAACATGCTCAATCTGTATAATGTAATTTTT  776

seq1  TTAGTCTTTCCATGCATTAACCTTATTAAGCACATTCCATTTTGTTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTTTCCATGCATTAACCTTATTAAGCACATTCCATTTTGTTCTTC  826

seq1  CTAATTTGCATGAATTTCTTGTACATTTATATTAATTATTCTTAATGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTGCATGAATTTCTTGTACATTTATATTAATTATTCTTAATGAAG  876

seq1  GTATAAGTCTTTCTGAGGGAAATTTTGGGAATTC  934
      ||||||||||||||||||||||||||||||||||
seq2  GTATAAGTCTTTCTGAGGGAAATTTTGGGAATTC  910