BAC Information

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BAC

Clone NameB6Ng01-036K20
Chromosome3 (Build37)X (Build37)
Map Location 41,059,167 - 41,059,737107,089,101 - 107,090,008
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036K20.bB6Ng01-036K20.g
ACCDH864770DH864771
length828883
definitionDH864770|Mus musculus domesticus DNA, BAC clone: B6Ng01-036K20, 5' end.DH864771|Mus musculus domesticus DNA, BAC clone: B6Ng01-036K20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,167 - 41,059,737)(107,089,101 - 107,090,008)
sequence
gaattctttggttagctctgagccccattttttaatggggttatttgata
ttctggagtccaccttcttgagttctttatatatattggataatagtccc
ctatctgatttaggataggtaaagatccttttccattctgttggtggact
ttttggcttattgactgtgtctcttgccttgcagaagctttgcaatttta
taaggtcccatttgttgattctcgatcttacagcacaagcccttgctgtt
ctattcaggaattatttccctgtacccctatctttgaggcttttccctac
ttcgtcctctataagttacactgtctctggttttatgtggagttccttga
tacacttagatttgaccttagtacaagcagataggaatcgatcaattcgc
attcttctacatgataactgccagttgtgctagcaccatttgttgaaaat
gctgtctttttttccactggatggttttgctcccttttcaaagattaagt
gaccataggtgtgtgggctcatttctgggtcttcaattctgttccattgg
tctacttgtctgtcgctatactaataccatgcagtttttatcacaaatgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatcattgaggagagtttatgctattctaggtttttgttattccagatga
attttgcagattgccctttctagttcatttgaagaattgagtttggaatt
ttgatggggattgcatcgaatctgtacattgcttttggtagatagccatt
tttacatgttgatcctgccaatccatga
gaattctattgaagctcatgccctctttcctttaacctcaaagatggcaa
agttggatagctgtaccctttctactttgatataagtgttaaaatgtttt
ttttctttcgttttagactattttattttattaagtgatctgaataatca
tatataatagtgttatcttaacatgctttactttattagatatacaaagc
ccttttattatataagctaacatattttcaagttatgagccttagaaaat
tgaatttttccctgggacaaatttttcctagacctttttacaatataaga
aatgacaataggacattgatttggatctttcttatatgttggatcacaga
tactttgttggaaatagtttatgttcatttctggatattgtatttatcac
tgtacctgttatattttaagctattacatcactgaagtaaaatcctggga
caactaaaaaggtctatagctaaatatctgaaatgatttgtcctttcttt
ggaatcactgttttttgaatatgttcccttctgaaattaatgttttagaa
atctagtctttaaattcatatattgatagtgtttggaaatagattattga
tgatataactagtgtcacaaaggcatttacaaatgaagaacatactgagc
ttgtgtttcctgttattacacaggaaaaacatccctcagagatgtcatca
ccttttcttttctatcatgaagaactatatgaaatattttttcttcataa
aaccaccatgtatagctgtctaagtattaaaaaatgtgactgctacaata
cacctatatgatcaaacttttataaactgtgctttgtgagcttctggagt
atatcaaacatatgaaatagaatcagtactaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059167_41059737
seq2: B6Ng01-036K20.b_45_616 (reverse)

seq1  TGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGA  50
      | |||||| |||||||||| |||||||||||| |||||||||||| ||||
seq2  TAGTATAGCGACAGACAAGTAGACCAATGGAACAGAATTGAAGACCCAGA  50

seq1  AACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAA  100
      || ||  |||||||||||||||||||| ||||| || |||||||| ||||
seq2  AATGAGCCCACACACCTATGGTCACTTAATCTTTGAAAAGGGAGC-AAAA  99

seq1  CCATCCAGTGG-AAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAA  149
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  CCATCCAGTGGAAAAAAAGACAGCATTTTCAACAAATGGTGCTAGCACAA  149

seq1  CTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTT  199
      ||||  ||||||||||||||||||||||||||||| | |||||||| |||
seq2  CTGGCAGTTATCATGTAGAAGAATGCGAATTGATCGATTCCTATCTGCTT  199

seq1  GTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAG  249
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  GTACTAAGGTCAAATCTAAGTGTATCAAGGAACTCCACATAAAACCAGAG  249

seq1  ACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGT  299
      ||| || |||||||||||||  |||| |||||||||||  |||||| || 
seq2  ACAGTGTAACTTATAGAGGACGAAGTAGGGAAAAGCCTCAAAGATAGGGG  299

seq1  CACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGAT  349
       |||||| || |||||||| |||||||||||| |||||||||||||||||
seq2  TACAGGGAAATAATTCCTGAATAGAACAGCAAGGGCTTGTGCTGTAAGAT  349

seq1  TGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCA  399
       ||||||  ||||||||||||| || ||| ||||||||||||||||||||
seq2  CGAGAATCAACAAATGGGACCTTATAAAATTGCAAAGCTTCTGCAAGGCA  399

seq1  AAAGACACCGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGAT  448
      | |||||| ||||||||| |||||||  |||||||||| ||| |||||||
seq2  AGAGACACAGTCAATAAGCCAAAAAGTCCACCAACAGAATGGAAAAGGAT  449

seq1  CTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAG  498
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  CTTTACCTATCCTAAATCAGATAGGGGACTATTATCCAATATATATAAAG  499

seq1  AACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGG  548
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  AACTCAAGAAGGTGGACTCCAGAATATCAAATAACCCCATTAAAAAATGG  549

seq1  GGCTCAGAGCTAAACAAAGAATT  571
      ||||||||||||| |||||||||
seq2  GGCTCAGAGCTAACCAAAGAATT  572

seq1: chrX_107089101_107090008
seq2: B6Ng01-036K20.g_67_949

seq1  GAATTCTATTGAAGCTCATGCCCTCTTTCCTTTAACCTCAAAGATGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGAAGCTCATGCCCTCTTTCCTTTAACCTCAAAGATGGCAA  50

seq1  AGTTGGATAGCTGTACCCTTTCTACTTTGATATAAGTGTTAAAATGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGATAGCTGTACCCTTTCTACTTTGATATAAGTGTTAAAATGTTTT  100

seq1  TTTTCTTTCGTTTTAGACTATTTTATTTTATTAAGTGATCTGAATAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCGTTTTAGACTATTTTATTTTATTAAGTGATCTGAATAATCA  150

seq1  TATATAATAGTGTTATCTTAACATGCTTTACTTTATTAGATATACAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATAGTGTTATCTTAACATGCTTTACTTTATTAGATATACAAAGC  200

seq1  CCTTTTATTATATAAGCTAACATATTTTCAAGTTATGAGCCTTAGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTATTATATAAGCTAACATATTTTCAAGTTATGAGCCTTAGAAAAT  250

seq1  TGAATTTTTCCCTGGGACAAATTTTTCCTAGACCTTTTTACAATATAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTTCCCTGGGACAAATTTTTCCTAGACCTTTTTACAATATAAGA  300

seq1  AATGACAATAGGACATTGATTTGGATCTTTCTTATATGTTGGATCACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACAATAGGACATTGATTTGGATCTTTCTTATATGTTGGATCACAGA  350

seq1  TACTTTGTTGGAAATAGTTTATGTTCATTTCTGGATATTGTATTTATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTTGGAAATAGTTTATGTTCATTTCTGGATATTGTATTTATCAC  400

seq1  TGTACCTGTTATATTTTAAGCTATTACATCACTGAAGTAAAATCCTGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTGTTATATTTTAAGCTATTACATCACTGAAGTAAAATCCTGGGA  450

seq1  CAACTAAAAAGGTCTATAGCTAAATATCTGAAATGATTTGTCCTTTCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTAAAAAGGTCTATAGCTAAATATCTGAAATGATTTGTCCTTTCTTT  500

seq1  GGAATCACTGTTTTTTGAATATGTTCCCTTCTGAAATTAATGTTTTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCACTGTTTTTTGAATATGTTCCCTTCTGAAATTAATGTTTTAGAA  550

seq1  ATCTAGTCTTTAAATTCATATATTGATAGTGTTTGGAAATAGATTATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTCTTTAAATTCATATATTGATAGTGTTTGGAAATAGATTATTGA  600

seq1  TGATATAACTAGTGTCACAAAGGCATTAACAAATGAAGAACATACTGAGC  650
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGATATAACTAGTGTCACAAAGGCATTTACAAATGAAGAACATACTGAGC  650

seq1  TTGTGTTTCCTGTTATTACACAGGAAAAACATCCCTCAGAGATGTCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTTTCCTGTTATTACACAGGAAAAACATCCCTCAGAGATGTCATCA  700

seq1  CCTTTTC-TTTCTATCATGAAGAACTATATGAAATATTTTTTCTTCATAA  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTTTCTATCATGAAGAACTATATGAAATATTTTTTCTTCATAA  750

seq1  AACCCACCATGTAATAGGCTGTCCTAAAGTATTAAAAAAATGTGACTGCT  799
      || ||||||||| ||| ||||||   ||||||| ||||||||||||||| 
seq2  AA-CCACCATGT-ATA-GCTGTC--TAAGTATT-AAAAAATGTGACTGC-  793

seq1  TACAATACACCTATATGAATCAAACACTTTATAATAAACTGGTGCCTTTG  849
      ||||||||||||||||| |||||||    | | ||||||| ||| |||||
seq2  TACAATACACCTATATG-ATCAAAC----TTTTATAAACT-GTG-CTTTG  836

seq1  TGAGCTTTCTGGGAAGGTAATATCAAAACAATTATGAAAATAGAAATCCA  899
      ||||| ||||||  ||   ||||| |||||  |||| |||||| ||||  
seq2  TGAGC-TTCTGG--AG--TATATC-AAACA--TATG-AAATAG-AATC--  874

seq1  GGTACTAAA  908
       ||||||||
seq2  AGTACTAAA  883