BAC Information

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BAC

Clone NameB6Ng01-037I04
ChromosomeX (Build37)
Map Location 87,307,289 - 87,459,549
singlet/doubletdoublet
Overlap geneEG547215, Gm370
Upstream geneLOC667934, Pet2, EG629419, 4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik
Downstream geneLOC194615, LOC629471, LOC100041815, Gm44, LOC670074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037I04.bB6Ng01-037I04.g
ACCDH865351DH865352
length1,1081,077
definitionDH865351|Mus musculus domesticus DNA, BAC clone: B6Ng01-037I04, 5' end.DH865352|Mus musculus domesticus DNA, BAC clone: B6Ng01-037I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,307,289 - 87,308,411)(87,458,472 - 87,459,549)
sequence
gaattccatatattacacctcattaagttgaaaaatgggaaggaatattt
tagcaaactatcctttttttactatactttgatgtaatttttttctggag
taaagtacctttttgtttggtcactgacttattcaatttataatcatatt
ttcagtgtacatgcacagatacatcatacacatgcccacaaatacccatg
acacccctgaagtatatcaataaatgaaaatgataccaacactgttgcat
atggttcatctgatttgatttggctaatttccctgaaagaaatgtttgct
aggaactggatctttgctgtttgttttggatacattaggagaccaattaa
gaacatttgtgcaatagtttaaaaaatattcatgtttcctttttatttta
caaacttgttttattttcttttaatttgtagatgtgttggactagtgcta
atgatcatggtttaaaggacgcaaactttgcttggattgaagcttaatga
gttcttgagtgaataatttctaaaatctcagctaactttattggcaaaat
cacaaaatgagtgtaattagtttctcatcaacctaaaaaatataaaaata
tacaaaatacttcaaaagagagtttactgtaaactttgttactcaacact
gagtaatcaacttcttcttcctaggacatctaagcatcctggagcctttc
ctttattttcactatttcaaacaatgagccttatatattagtcttaattc
atacatagccattacattgatcatcataagaaaatccctcccattaaacg
gaattgaatttgttaattaactgaaatgtgttttattctttagtatgtac
tttataaggttggttctttctccattgattctatcatgttttcttttgta
ctacagaacaagtcttctctttgtaattacacattgtttcttagtcagtg
ttattttttgctgaaatcaataccatgagcaggtacacttataaagaatc
attttcccatcccgggctgacgaggcaggctcatgacagtgacaccagaa
tttaaagttttgagacctggacgttgcggatgctgctcgcactgtcctca
tgcccaaa
gaattctcttaaaatttaattttctttttgtttcttgatttctacatttc
ctttgccctttgtcaccttcattcttctgatttgacttgacagtagctac
tttcattgtttttatactttggctttaattatgtttcagaccttttgatt
tatttctttcactgagactagatgatataagtgaggacatcagtgtggat
tgtcatcccttaccaatgctttggatataatttctaagaatgatgactac
cctagttgtttgctttatgttgctgtgataacagtcacaaaaactctcta
gggcaggaaaagctttgtttgactcacaagttatagtccatcattgggaa
gtcaggtcataaaccttaacaggaggaaaggcagaaagggatcatgaaaa
aaataaaaatagtgctcattgacttgcttcttctgcattattcagttaat
ttctctttattcagtcaagggcctatctgcctggggatatactatttgca
gtgggttggagcctcctacatcaattaccaatgaagaaaatgccccacag
acatgttggaagaccaatctgattgaggcatatactcagttgagactcca
ttttcaatagtatgtcaacctgatatctgaagccaactatgatagagaac
tagcctgttaatgttttagtttgactttatactgagagggtgagaaatca
attatttaaatgcaaagcaaaactataacaagagagccaaaaagtgagta
aagtacataatagagaaataattgatattgtggggttttgttgctgtatt
cagaaactttaagctccaattcagagggtttgtttcacattgatttagca
tcttataaatattaggctttaatgatcatattttcttataattctatcca
ttactgtatagcaattagattctcctagtctattattgcctttccatctg
taaattttgtatggcttttatctttgtgtttaggaaaatggtgatgaaaa
gctatcttgggacctcgggttcccttccttactatctccggggaaaattg
caactcttttcaggcagtttcacgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_87307289_87308411
seq2: B6Ng01-037I04.b_44_1151

seq1  GAATTCCATATATTACACCTCATTAAGTTGAAAAATGGGAAGGAATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATATTACACCTCATTAAGTTGAAAAATGGGAAGGAATATTT  50

seq1  TAGCAAACTATCCTTTTTTTACTATACTTTGATGTAATTTTTTTCTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAACTATCCTTTTTTTACTATACTTTGATGTAATTTTTTTCTGGAG  100

seq1  TAAAGTACCTTTTTGTTTGGTCACTGACTTATTCAATTTATAATCATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTACCTTTTTGTTTGGTCACTGACTTATTCAATTTATAATCATATT  150

seq1  TTCAGTGTACATGCACAGATACATCATACACATGCCCACAAATACCCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGTACATGCACAGATACATCATACACATGCCCACAAATACCCATG  200

seq1  ACACCCCTGAAGTATATCAATAAATGAAAATGATACCAACACTGTTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCTGAAGTATATCAATAAATGAAAATGATACCAACACTGTTGCAT  250

seq1  ATGGTTCATCTGATTTGATTTGGCTAATTTCCCTGAAAGAAATGTTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCATCTGATTTGATTTGGCTAATTTCCCTGAAAGAAATGTTTGCT  300

seq1  AGGAACTGGATCTTTGCTGTTTGTTTTGGATACATTAGGAGACCAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGGATCTTTGCTGTTTGTTTTGGATACATTAGGAGACCAATTAA  350

seq1  GAACATTTGTGCAATAGTTTAAAAAATATTCATGTTTCCTTTTTATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTGTGCAATAGTTTAAAAAATATTCATGTTTCCTTTTTATTTTA  400

seq1  CAAACTTGTTTTATTTTCTTTTAATTTGTAGATGTGTTGGACTAGTGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGTTTTATTTTCTTTTAATTTGTAGATGTGTTGGACTAGTGCTA  450

seq1  ATGATCATGGTTTAAAGGACGCAAACTTTGCTTGGATTGAAGCTTAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCATGGTTTAAAGGACGCAAACTTTGCTTGGATTGAAGCTTAATGA  500

seq1  GTTCTTGAGTGAATAATTTCTAAAATCTCAGCTAACTTTATTGGCAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGAGTGAATAATTTCTAAAATCTCAGCTAACTTTATTGGCAAAAT  550

seq1  CACAAAATGAGTGTAATTAGTTTCTCATCAACCTAAAAAATATAAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATGAGTGTAATTAGTTTCTCATCAACCTAAAAAATATAAAAATA  600

seq1  TACAAAATACTTCAAAAGAGAGTTTACTGTAA--CTTGTTACTCAACACT  648
      ||||||||||||||||||||||||||||||||   |||||||||||||||
seq2  TACAAAATACTTCAAAAGAGAGTTTACTGTAAACTTTGTTACTCAACACT  650

seq1  GAGTAATCAACTTCTTCTTCCTAGGACATCTAAGCATCCTGGAGCCTTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATCAACTTCTTCTTCCTAGGACATCTAAGCATCCTGGAGCCTTTC  700

seq1  CTTTATTTTCACTATTTCAAACAATGAGCCTTATATATTAGTCTTAATTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTCACTATTTCAAACAATGAGCCTTATATATTAGTCTTAATTC  750

seq1  ATACATAGCCATTACATTGATCATCATAAGAAAATCCCTCCCATTAAACG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAGCCATTACATTGATCATCATAAGAAAATCCCTCCCATTAAACG  800

seq1  GAATTGAATTTGTTAATTAACTGAAATGTGTTTTATTCTTTAGTATGTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAATTTGTTAATTAACTGAAATGTGTTTTATTCTTTAGTATGTAC  850

seq1  TTTATAAGGTTGGTTCTTTCTCCATTGATTCTATCATGTTTTCTTTTTGT  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTATAAGGTTGGTTCTTTCTCCATTGATTCTATCATGTTTTC-TTTTGT  899

seq1  ACTACAGAACAAGTCTTCTCTTTGTAATTTACACATTGTTTCTTAGTCAG  948
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTACAGAACAAGTCTTCTCTTTGTAA-TTACACATTGTTTCTTAGTCAG  948

seq1  TGTTATTTTTTGCTGTAAATCAATACCATGAGCAGGTAACACTTATAAAA  998
      ||||||||||||||| ||||||||||||||||||||| ||||||||||| 
seq2  TGTTATTTTTTGCTG-AAATCAATACCATGAGCAGGT-ACACTTATAAA-  995

seq1  GAAATCATTTTCCCATCCCGGGCTGAACGAGGCAGGCTCATGGACCAGTG  1048
        ||||||||||||||||||||||| ||||||||||||||||   |||||
seq2  -GAATCATTTTCCCATCCCGGGCTG-ACGAGGCAGGCTCATG--ACAGTG  1041

seq1  ACACCCAGAAATTAAGAGTTTTTGAGACCCGGGACGTTGCGGAATGCTGC  1098
      ||| |||||| |||| || |||||||| || ||||||||||| |||||||
seq2  ACA-CCAGAATTTAA-AG-TTTTGAGA-CCTGGACGTTGCGG-ATGCTGC  1086

seq1  TCCGCAGCTGTCCTCATGCCACAAA  1123
      | |||| ||||||||||||| ||||
seq2  T-CGCA-CTGTCCTCATGCC-CAAA  1108

seq1: chrX_87458472_87459549
seq2: B6Ng01-037I04.g_68_1144 (reverse)

seq1  AAAC-TGAAACTGCCTGAAAAAGATTGCAATATTCCACAGAGATACTAAG  49
      |||| ||||||||||||||||   ||||||| |||| | |||||| ||||
seq2  AAACGTGAAACTGCCTGAAAAGAGTTGCAATTTTCCCCGGAGATAGTAAG  50

seq1  AAAGGAAAACCAGAGTCCCAAAATAGCTTTTCATCACCATTTTCCTAAAC  99
       |||| || ||   ||||||| ||||||||||||||||||||||||||||
seq2  GAAGGGAACCCGAGGTCCCAAGATAGCTTTTCATCACCATTTTCCTAAAC  100

seq1  ACAAAGAT-AAAGCCATACAAAAATCTACAGATGGAAAGGCAATTAATAA  148
      |||||||| |||||||||| ||||| ||||||||||||||||| |||| |
seq2  ACAAAGATAAAAGCCATAC-AAAATTTACAGATGGAAAGGCAA-TAAT-A  147

seq1  GACTAGGAGAATCTAATTGCTATAACAGTAATGGATAGAATTATAAGAAA  198
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GACTAGGAGAATCTAATTGCTAT-ACAGTAATGGATAGAATTATAAGAAA  196

seq1  ATATGATCATTAAAGCCTAATATTTATAAGATGCTAAATC-ATGTGAAAC  247
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATGATCATTAAAGCCTAATATTTATAAGATGCTAAATCAATGTGAAAC  246

seq1  AAACCCTCTGAATTGGAGCTTAAAGTTTCTGAATACAGCAACAAAACCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTCTGAATTGGAGCTTAAAGTTTCTGAATACAGCAACAAAACCCC  296

seq1  ACAATATCAATTATTTCTCTATTATGTACTTTACTCACTTTTTGGCTCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATCAATTATTTCTCTATTATGTACTTTACTCACTTTTTGGCTCTC  346

seq1  TTGTTATAGTTTTGCTTTGCATTTAAATAATTGATTTCTCACCCTCTCAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATAGTTTTGCTTTGCATTTAAATAATTGATTTCTCACCCTCTCAG  396

seq1  TATAAAGTCAAACTAAAACATTAACAGGCTAGTTCTCTATCATAGTTGGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGTCAAACTAAAACATTAACAGGCTAGTTCTCTATCATAGTTGGC  446

seq1  TTCAGATATCAGGTTGACATACTATTGAAAATGGAGTCTCAACTGAGTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATATCAGGTTGACATACTATTGAAAATGGAGTCTCAACTGAGTAT  496

seq1  ATGCCTCAATCAGATTGGTCTTCCAACATGTCTGTGGGGCATTTTCTTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCAATCAGATTGGTCTTCCAACATGTCTGTGGGGCATTTTCTTCA  546

seq1  TTGGTAATTGATGTAGGAGGCTCCAACCCACTGCAAATAGTATATCCCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATTGATGTAGGAGGCTCCAACCCACTGCAAATAGTATATCCCCA  596

seq1  GGCAGATAGGCCCTTGACTGAATAAAGAGAAATTAACTGAATAATGCAGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATAGGCCCTTGACTGAATAAAGAGAAATTAACTGAATAATGCAGA  646

seq1  AGAAGCAAGTCAATGAGCACTATTTTTATTTTTTTCATGATCCCTTTCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAGTCAATGAGCACTATTTTTATTTTTTTCATGATCCCTTTCTG  696

seq1  CCTTTCCTCCTGTTAAGGTTTATGACCTGACTTCCCAATGATGGACTATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTCCTGTTAAGGTTTATGACCTGACTTCCCAATGATGGACTATA  746

seq1  ACTTGTGAGTCAAACAAAGCTTTTCCTGCCCTAGAGAGTTTTTGTGACTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGAGTCAAACAAAGCTTTTCCTGCCCTAGAGAGTTTTTGTGACTG  796

seq1  TTATCACAGCAACATAAAGCAAACAACTAGGGTAGTCATCATTCTTAGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACAGCAACATAAAGCAAACAACTAGGGTAGTCATCATTCTTAGAA  846

seq1  ATTATATCCAAAGCATTGGTAAGGGATGACAATCCACACTGATGTCCTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCCAAAGCATTGGTAAGGGATGACAATCCACACTGATGTCCTCA  896

seq1  CTTATATCATCTAGTCTCAGTGAAAGAAATAAATCAAAAGGTCTGAAACA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATCATCTAGTCTCAGTGAAAGAAATAAATCAAAAGGTCTGAAACA  946

seq1  TAATTAAAGCCAAAGTATAAAAACAATGAAAGTAGCTACTGTCAAGTCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAGCCAAAGTATAAAAACAATGAAAGTAGCTACTGTCAAGTCAA  996

seq1  ATCAGAAGAATGAAGGTGACAAAGGGCAAAGGAAATGTAGAAATCAAGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAGAATGAAGGTGACAAAGGGCAAAGGAAATGTAGAAATCAAGAA  1046

seq1  ACAAAAAGAAAATTAAATTTTAAGAGAATTC  1078
      |||||||||||||||||||||||||||||||
seq2  ACAAAAAGAAAATTAAATTTTAAGAGAATTC  1077