BAC Information

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BAC

Clone NameB6Ng01-037J22
ChromosomeX (Build37)
Map Location 27,133,831 - 27,271,959
singlet/doubletdoublet
Overlap geneLOC664881, LOC100039240
Upstream geneLOC619914, LOC100039039, LOC619991, LOC664844, LOC100042154, EG664861, LOC664866, LOC100042175, LOC100039194, LOC100039208, EG664877
Downstream geneLOC100039248, LOC100039073, EG664890, LOC664898, LOC22526, EG664906, LOC664917, LOC100039324, LOC100039334, LOC100039096, EG664923, LOC100039364, LOC100039377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-037J22.bB6Ng01-037J22.g
ACCDH865422DH865423
length1,0991,074
definitionDH865422|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J22, 5' end.DH865423|Mus musculus domesticus DNA, BAC clone: B6Ng01-037J22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,133,831 - 27,134,573)(27,270,877 - 27,271,959)
sequence
gaattcatcctacgctttgcccacccacaactagagacctgttccaagca
gacaaaggggcccagagtgtctgtggcaattatggaaaataaatataaat
gcatttccttggtgaatttaacgaagaatgatctaagatttgaatttatt
atttctctccctccaatatcttccactgtttctctctgttgcatgaatct
gtgtctttaccagcttgaataacagaatcaatttctctctctctctctct
ctctctctctcgctcgctcgctcgcttgctccctctcgctctctttctct
ccgtctctctccttctctccctctctctccctctcccctctctctctttc
tctgtctctacccccattgagccacacaaaaagcaccatatggggaaaaa
ttagtgatacctaaagaaatgtttcatagtgtttttcaagtgaataaata
actgacttcaactgatctggataaaaaacattacaaataccatttttatg
cactatttatatattttattcaatatttgtggtgggtattcatttttaaa
aaacagctttgatcctatttaccattttccaaatgtgatcattgtaacac
ttacatagatacacattcattacactctgggtcagaagcattgaaaaaca
tattttaaaataacagctatgccttacatcagattataatgattggttac
ttaaaactcaaggcaagtaaggttggttgttccattagtcccttaaagag
aggttatacaaaggaaatgcatacagttggcattgttctacgtctgaagt
gacctcagagtatattattaactctggttttagattaagcaaaaaggcca
gtcataggtaaaagaaatttctcctgagaaatttttattaaaaattcatt
accattggtgtagacttgaggtaaaggtagcttggcctcaaagagtgatt
ttgacctgaagagaattttctcatagatgcccaaaatatttccgtgtgtt
tctgcatggatttgggaaatgggttattgggctcagagtatggaatgagt
tccctctgaactaagagtctttagggaaccaagacagtgacctggtggc
gaattcagcagtttctccagaagcagtacagatcatagtcatcaccatta
tctccatcagaaatattaaaaatagactctatcttgttactggtgacagc
atccagctggtatgaccatgactgaaacctcttatctagtgacagaatga
aaatggacataaaaatgtttataaatggcagaacacttatcatgaatgtg
gcagaattatacataattgacatcagtaattattctaatgcagtacaaga
ctgtcatattaatgtggtcccataatgcagcagggatcactgacatgatt
gctgctaaaggcctaaagtatcatggccatacattgtctgttgccagtat
atatgtgacctcaacaaaacatatatcagaacatttaactcaacatgacc
tgagggaacagtactgactgtgaagttcactgtaaattctgatggtttct
gggatccttgacattaacaatatcttcagaagcaacatgaaatgtgggtt
tcaatatggctactgatggcagcatggataattgtgattgtcataatttc
tggagacactttggagagtcaggttctaatgagaaagattaatgtagaag
gaatagggaagaaggtaagataaactaaggatatctgcaaaagtcataat
aaatctcactactaaacttcataaaaacctatacctcacataagctataa
gtgaatgagcatgtacagtttaattagaactttacagtttcaatttactt
attaaccaatgtatgcaattgttatgtatcttttatttcaattatataac
attttctatttatatatattttgctcaaataaaaaattaggttcatatta
ctgctaaatattacccaaaatatgcatgatggtttttatgtggggattta
ttgatactgttatacatatagctaaaattataacaataggttctccccta
tgtcctatcacaccctggagctatgctttttggtcaatttgcatatgagc
acggttcccctcctggtgtagtggagccttgatctaataggaggccaaaa
tctatgactaagtcacttatttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_27133831_27134573
seq2: B6Ng01-037J22.b_415_1142

seq1  CCACACAAAAAGCACCATATGGGGAAAAATTAGTGATACCTAAAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAAAAAGCACCATATGGGGAAAAATTAGTGATACCTAAAGAAATG  50

seq1  TTTCATAGTGTTTTTCAAGTGAATAAATAACTGACTTCAACTGATCTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGTGTTTTTCAAGTGAATAAATAACTGACTTCAACTGATCTGGA  100

seq1  TAAAAAACATTACAAATACCATTTTTATGCACTATTTATATATTTTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAACATTACAAATACCATTTTTATGCACTATTTATATATTTTATTC  150

seq1  AATATTTGTGGTGGGTATTCATTTTTAAAAAACAGCTTTGATCCTATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTGTGGTGGGTATTCATTTTTAAAAAACAGCTTTGATCCTATTTA  200

seq1  CCATTTTCCAAATGTGATCATTGTAACACTTACATAGATACACATTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTCCAAATGTGATCATTGTAACACTTACATAGATACACATTCATT  250

seq1  ACACTCTGGGTCAGAAGCATTGAAAAACATATTTTAAAATAACAGCTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCTGGGTCAGAAGCATTGAAAAACATATTTTAAAATAACAGCTATG  300

seq1  CCTTACATCAGATTATAATGATTGGTTACTTAAAACTCAAGGCAAGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACATCAGATTATAATGATTGGTTACTTAAAACTCAAGGCAAGTAAG  350

seq1  GTTGGTTGTTCCATTAGTCCCTTAAAGAGAGGTTATACAAAGGAAATGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGTTCCATTAGTCCCTTAAAGAGAGGTTATACAAAGGAAATGCA  400

seq1  TACAGTTGGCATTGTTCTACGTCTGAAGTGACCTCAGAGTATATTATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGGCATTGTTCTACGTCTGAAGTGACCTCAGAGTATATTATTAA  450

seq1  CTCTGGTTTTGAGATTAAGCAAAAAGGCCAGTCATA-GTAAAAGAAATTT  499
      |||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  CTCTGGTTTT-AGATTAAGCAAAAAGGCCAGTCATAGGTAAAAGAAATTT  499

seq1  CTCCTGAGAAATTTTTATTAAAAATTCATTACCATTGGTGTAGACTTGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGAAATTTTTATTAAAAATTCATTACCATTGGTGTAGACTTGAG  549

seq1  GTAAAGGTAGCTTGGCCTTCACAGAGTGATTTTGACCTGAAGGAGAATTT  599
      ||||||||||||||||| ||| ||||||||||||||||||| ||||||||
seq2  GTAAAGGTAGCTTGGCC-TCAAAGAGTGATTTTGACCTGAA-GAGAATTT  597

seq1  TCTCATAGATGCCCCAAATATTTCCGTGTGGTTTTCCTGCATGGATTTGG  649
      |||||||||||||| |||||||||||||||   || ||||||||||||||
seq2  TCTCATAGATGCCCAAAATATTTCCGTGTG---TTTCTGCATGGATTTGG  644

seq1  GAAATGGGTTATTTGGGTCTCAGAAGTATGGGAATGTAAGTTCCCTCAG-  698
      |||||||||||||  || ||||| ||||| ||||||  ||||||||| | 
seq2  GAAATGGGTTATT--GGGCTCAG-AGTAT-GGAATG--AGTTCCCTCTGA  688

seq1  ACTAAGGAGTCTTTAGGAGAACCAAGAACCAGGTTGACCT-GTGGC  743
      ||||| ||||||||||| |||||||||  |||  |||||| |||||
seq2  ACTAA-GAGTCTTTAGG-GAACCAAGA--CAG--TGACCTGGTGGC  728

seq1: chrX_27270877_27271959
seq2: B6Ng01-037J22.g_68_1141 (reverse)

seq1  AGAAAATTAAGTGACTTTAGTCAATAGATATTGGGCTTCTTATTAGATTC  50
      |||||  |||||||| |||||| |||||| || ||| || ||||||| ||
seq2  AGAAA--TAAGTGAC-TTAGTC-ATAGAT-TTTGGCCTCCTATTAGA-TC  44

seq1  AAGGCT-CACTACA-CAGGAGAGGAACCGTGCTCATTAATGCAAAATTGA  98
      |||||| ||||||| |||||| ||||||||||||||  |||| |||||||
seq2  AAGGCTCCACTACACCAGGAGGGGAACCGTGCTCAT--ATGC-AAATTGA  91

seq1  CCAAAAAGCAATAGCT-CAGGGTGTGATAGGACATAGGGGAGAACCTATT  147
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  CCAAAAAGC-ATAGCTCCAGGGTGTGATAGGACATAGGGGAGAACCTATT  140

seq1  GTTATTATTTTTAGCTATATGTAT-ACAGTATCAATAAATCCCCACATAA  196
      |||| || |||||||||||||||| |||||||||||||||||||||||||
seq2  GTTA-TAATTTTAGCTATATGTATAACAGTATCAATAAATCCCCACATAA  189

seq1  AAACCATCATGCATA-TTTGGGTAATATTTAGCAGTAATATGAACCTAAT  245
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAACCATCATGCATATTTTGGGTAATATTTAGCAGTAATATGAACCTAAT  239

seq1  TTTATTATTTGAGCAAAATATATATAAATAGAAAATGTTATATAATTTGA  295
      ||| ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTT-TTATTTGAGCAAAATATATATAAATAGAAAATGTTATATAA-TTGA  287

seq1  AATAAAAGATACATAAACAATTGCATACATTGGTTTAATAAGTAAATTGA  345
      |||||||||||||| |||||||||||||||||| ||||||||||||||||
seq2  AATAAAAGATACAT-AACAATTGCATACATTGG-TTAATAAGTAAATTGA  335

seq1  AACTGTAAAGTTCTAATTAAACTGTACATGCTCATTCACTTATAGCTTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAAAGTTCTAATTAAACTGTACATGCTCATTCACTTATAGCTTAT  385

seq1  GTGAGGTATAGGTTTTTATGAAG-TTAGTAGTGAGATTTATTATGACTTT  444
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGAGGTATAGGTTTTTATGAAGTTTAGTAGTGAGATTTATTATGACTTT  435

seq1  TGCAGATATCCTTAGTTTATCTTACCTTCTTCCCTATTCCTTCTACATTA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATATCCTTAGTTTATCTTACCTTCTTCCCTATTCCTTCTACATTA  485

seq1  ATCTTTCTCATTAGAACCTGACTCTCCAAAGTGTCTCCAGAAATTATGAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTCATTAGAACCTGACTCTCCAAAGTGTCTCCAGAAATTATGAC  535

seq1  AATCACAATTATCCATGCTGCCATCAGTAGCCATATTGAAACCCACATTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAATTATCCATGCTGCCATCAGTAGCCATATTGAAACCCACATTT  585

seq1  CATGTTGCTTCTGAAGATATTGTTAATGTCAAGGATCCCAGAAACCATCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGCTTCTGAAGATATTGTTAATGTCAAGGATCCCAGAAACCATCA  635

seq1  GAATTTACAGTGAACTTCACAGTCAGTACTGTTCCCTCAGGTCATGTTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACAGTGAACTTCACAGTCAGTACTGTTCCCTCAGGTCATGTTGA  685

seq1  GTTAAATGTTCTGATATATGTTTTGTTGAGGTCACATATATACTGGCAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGTTCTGATATATGTTTTGTTGAGGTCACATATATACTGGCAAC  735

seq1  AGACAATGTATGGCCATGATACTTTAGGCCTTTAGCAGCAATCATGTCAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGTATGGCCATGATACTTTAGGCCTTTAGCAGCAATCATGTCAG  785

seq1  TGATCCCTGCTGCATTATGGGACCACATTAATATGACAGTCTTGTACTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCCTGCTGCATTATGGGACCACATTAATATGACAGTCTTGTACTGC  835

seq1  ATTAGAATAATTACTGATGTCAATTATGTATAATTCTGCCACATTCATGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATAATTACTGATGTCAATTATGTATAATTCTGCCACATTCATGA  885

seq1  TAAGTGTTCTGCCATTTATAAACATTTTTATGTCCATTTTCATTCTGTCA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTTCTGCCATTTATAAACATTTTTATGTCCATTTTCATTCTGTCA  935

seq1  CTAGATAAGAGGTTTCAGTCATGGTCATACCAGCTGGATGCTGTCACCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAAGAGGTTTCAGTCATGGTCATACCAGCTGGATGCTGTCACCAG  985

seq1  TAACAAGATAGAGTCTATTTTTAATATTTCTGATGGAGATAATGGTGATG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGATAGAGTCTATTTTTAATATTTCTGATGGAGATAATGGTGATG  1035

seq1  ACTATGATCTGTACTGCTTCTGGAGAAACTGCTGAATTC  1083
      |||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATCTGTACTGCTTCTGGAGAAACTGCTGAATTC  1074