BAC Information

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BAC

Clone NameB6Ng01-038F06
ChromosomeX (Build37)
Map Location 71,487,215 - 71,605,274
singlet/doubletdoublet
Overlap geneFlna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3
Upstream geneXlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481, Dusp9, Pnck, Slc6a8, Bcap31, Abcd1, Plxnb3, Srpk3, Idh3g, Ssr4, Pdzd4, L1cam, Avpr2, Arhgap4, Ard1, Renbp, Hcfc1, LOC100041206, LOC667264, Irak1, Mecp2, Opn1mw, LOC627455, Gm1538, LOC628388, Tktl1
Downstream geneUbl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412, 4930428E23Rik, EG667190, F8, LOC572559, LOC667218
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038F06.bB6Ng01-038F06.g
ACCDH865919DH865920
length9391,075
definitionDH865919|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F06, 5' end.DH865920|Mus musculus domesticus DNA, BAC clone: B6Ng01-038F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,487,215 - 71,488,166)(71,604,172 - 71,605,274)
sequence
gaattctgctctcttcttcaccatattgcctgtaggctcgatgcctgtca
gaagatgagaaagccatgaaccaactagtagggctaccctctcacctcta
taccctggttcccagaccctaaagggttatggacacagcattagagaccc
tatccctctgcaggctcagtgcccctcccccagctaggtacaatccaatc
aggtagatttgttcaatgtaaacccagcattgagccgggcctcagatcca
tgctatatgggctattgccaccaagacaggcccatgcctgttctctgaaa
aatctggtttgctgtactttcctaaccccttgcacctgcacaatcctgac
tgcttcatctccaattatagaatagcagtacacgaggtcatccttcatac
gtgaggttcttctccttcaatcaagaagcttcctacaagccagtatgact
taaggaacttactagtattcccttgccaaggcaccatttttaaccaggtt
ttgatccattcatcttcctcaagacctcttaggacccaaaatgaaagaga
atactgtcccatggaccggatataagtgctcagccccttggaatgccact
gaccaggccccctcacctggcccataggctcgggctttcttcgggttcag
tttgggccgaagaggagcccctggcttcagcttggccttgggaaactgag
aaaggtagtcataacagatgctcatctacatggggtccacaatttcttct
gggtaatcacctgttaaagaaaggagaaaaaaagccattggttcctctct
tcacttaacagcaccctttagctgcagggtcagtccggaacatatctgga
gaaatgctagcagtatacagcctgctgccatggctcccggcattgttcca
ggcttctcacgctccaggatccagtcaggacataggcct
gaattctctgtttagatctgtaccccctccccccttttttttcttggttt
ttcaagacagggtttctctgtgtagctctggctgtcctggaactcacttc
gtagaccaggctggtttcgaactcagaaatccgcctgcctctgtctccca
agtgctgggactaaaggcgtgcgccatcaccgcccagctttgctgatgtt
tttgattctttatatattttagatatcaaccctctgtcagatgtagggtt
ggtgaaaatcttttccacttctgtcgactaccattttgtactattgatgg
tgtcctttgccttacagaagattttcagttttatgaggtcctgtttatta
attgttgatcttagtgcctgagctattggcattccgttcaggaagctgtc
tcctgtgccaataaattcaaggctattccctgttgtgtgtagcttttaaa
aacccacgtctggtcaggctaggttctagaatcggtagcatgttcctctt
gccagatgccaaaactcccttctgcccctggttcccgaggctggcttgtt
aatctgcccaaaccagttcttctggtgaacgcctggagctactgctccag
ttccactgactgattggcccggtgattggctacactgaccgccaaaggcg
acaccgaggttttgccctctctctcacccacctaaatcatcgcaaatgga
aaacaggcagttctaacactttaaaaccagccagatagcacaactggtgg
cgaagaatatcttgctcgatcttccttggcctccacaggctgctgaggcc
acaaactattggagccccgaggaacctataagtccacaacttctcatcaa
cacattaccccgtccaactctaatcctctccccttctcttgctgtcctgc
ccggaaatcctgcctccatatctcgcccagcattggctatcagcattagg
gataatagtaaactccccctacatttccccacttcttttctatcagtcag
tgtatcagtttatgtgagtttgatccacttgactgagtttggcacaggat
gataatgatctattgcattcactac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_71487215_71488166
seq2: B6Ng01-038F06.b_44_982

seq1  GAATTCTGCTCTCTTCTTCACCATATTGCCTGTAGGCTCGATGCCTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTCTCTTCTTCACCATATTGCCTGTAGGCTCGATGCCTGTCA  50

seq1  GAAGATGAGAAAGCCATGAACCAACTAGTAGGGCTACCCTCTCACCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGAGAAAGCCATGAACCAACTAGTAGGGCTACCCTCTCACCTCTA  100

seq1  TACCCTGGTTCCCAGACCCTAAAGGGTTATGGACACAGCATTAGAGACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTGGTTCCCAGACCCTAAAGGGTTATGGACACAGCATTAGAGACCC  150

seq1  TATCCCTCTGCAGGCTCAGTGCCCCTCCCCCAGCTAGGTACAATCCAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCTCTGCAGGCTCAGTGCCCCTCCCCCAGCTAGGTACAATCCAATC  200

seq1  AGGTAGATTTGTTCAATGTAAACCCAGCATTGAGCCGGGCCTCAGATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATTTGTTCAATGTAAACCCAGCATTGAGCCGGGCCTCAGATCCA  250

seq1  TGCTATATGGGCTATTGCCACCAAGACAGGCCCATGCCTGTTCTCTGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATGGGCTATTGCCACCAAGACAGGCCCATGCCTGTTCTCTGAAA  300

seq1  AATCTGGTTTGCTGTACTTTCCTAACCCCTTGCACCTGCACAATCCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGTTTGCTGTACTTTCCTAACCCCTTGCACCTGCACAATCCTGAC  350

seq1  TGCTTCATCTCCAATTATAGAATAGCAGTACACGAGGTCATCCTTCATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATCTCCAATTATAGAATAGCAGTACACGAGGTCATCCTTCATAC  400

seq1  GTGAGGTTCTTCTCCTTCAATCAAGAAGCTTCCTACAAGCCAGTATGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTTCTTCTCCTTCAATCAAGAAGCTTCCTACAAGCCAGTATGACT  450

seq1  TAAGGAACTTACTAGTATTCCCTTGCCAAGGCACCATTTTTAACCAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAACTTACTAGTATTCCCTTGCCAAGGCACCATTTTTAACCAGGTT  500

seq1  TTGATCCATTCATCTTCCTCAAGACCTCTTAGGACCCAAAATGAAAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCATTCATCTTCCTCAAGACCTCTTAGGACCCAAAATGAAAGAGA  550

seq1  ATACTGTCCCATGGACCGGATATAAGTGCTCAGCCCCTTGGAATGCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTCCCATGGACCGGATATAAGTGCTCAGCCCCTTGGAATGCCACT  600

seq1  GACCAGGCCCCCTCACCTGGCCCATAGGCTCGGGCTTTCTTCGGGTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCCCCCTCACCTGGCCCATAGGCTCGGGCTTTCTTCGGGTTCAG  650

seq1  TTTGGGCCGAAGAGGAGCCCCTGGCTTCAGCTTGGCCTTGGGAAACTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGCCGAAGAGGAGCCCCTGGCTTCAGCTTGGCCTTGGGAAACTGAG  700

seq1  ACAGGTAGGTCATAACAGAATGCTCATCTACATTGGGGTCCACAATTTCT  750
      | ||||| |||||||||| ||||||||||||| |||||||||||||||||
seq2  AAAGGTA-GTCATAACAG-ATGCTCATCTACA-TGGGGTCCACAATTTCT  747

seq1  TCTGGGGTAATCACCTGTTACAGACAGAAG-ACAAGAGCCATTGGGT-CT  798
      ||| |||||||||||||||| ||| || || | || ||||||||| | ||
seq2  TCT-GGGTAATCACCTGTTAAAGAAAGGAGAAAAAAAGCCATTGGTTCCT  796

seq1  CTCTTCACTTTAACCAAGCACCCCTTAGCTGCAGGGGTCAGTCCGGGAGC  848
      |||||||| |||||  ||||||| ||||||||| |||||||||| ||| |
seq2  CTCTTCAC-TTAAC--AGCACCCTTTAGCTGCA-GGGTCAGTCC-GGAAC  841

seq1  ATACCT-GAGGAATGCCTAGCCAGTCATCAGCCTGCTG-CATGGCTTCCC  896
      ||| || ||| |||| |||| ||||   |||||||||| |||||| ||||
seq2  ATATCTGGAGAAATG-CTAG-CAGTATACAGCCTGCTGCCATGGC-TCCC  888

seq1  GTGCATTGTTCACAGGCTTACTAGCATCCCAGGAGTCCCAGTCAGGACAT  946
      | ||||||||| ||||||| ||  |   ||||||   |||||||||||||
seq2  G-GCATTGTTC-CAGGCTT-CTCACGCTCCAGGA--TCCAGTCAGGACAT  933

seq1  AGGCCT  952
      ||||||
seq2  AGGCCT  939

seq1: chrX_71604172_71605274
seq2: B6Ng01-038F06.g_67_1141 (reverse)

seq1  GTAGTAGAATGCAAATAGATCTATTATCTATCACTGTGCACAAAACTCAA  50
      ||||| |||||| |||||||| |||||| ||| |||||  | |||||| |
seq2  GTAGT-GAATGC-AATAGATC-ATTATC-ATC-CTGTG--CCAAACTC-A  42

seq1  GTCCAAGTGGATCAAAAACCTCAACATAAAACCTGATACACTGAACCTGA  100
      || |||||||||||||   ||| |||||||  ||||||||||||  ||||
seq2  GT-CAAGTGGATCAAA---CTC-ACATAAA--CTGATACACTGA--CTGA  83

seq1  TAGAAAAGAAAGTGGGGAAATGTAGGGGGAGTTTAACTAATTAATTCCCT  150
      |||||||| ||||||||||||||||||||||||| ||| ||||  |||||
seq2  TAGAAAAG-AAGTGGGGAAATGTAGGGGGAGTTT-ACT-ATTA--TCCCT  128

seq1  AATTGCTGATTAAGCCAATTGCTGGGCGAAGATATGGAGGCAGGATTTTC  200
      || |||||||  |||||| ||||||||| |||||||||||||||| ||||
seq2  AA-TGCTGAT--AGCCAA-TGCTGGGCG-AGATATGGAGGCAGGA-TTTC  172

seq1  CGGGCAGGACAGCAAGAGAAGGGGAGAGGATTAGAGTTGGACGGGGTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGGACAGCAAGAGAAGGGGAGAGGATTAGAGTTGGACGGGGTAAT  222

seq1  GTGTTGATGAGAAGTTGTGGACTTATAGGTTCCTCGGGGCTCCAATAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGATGAGAAGTTGTGGACTTATAGGTTCCTCGGGGCTCCAATAGTT  272

seq1  TGTGGCCTCAGCAGCCTGTGGAGGCCAAGGAAGATCGAGCAAGATATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTCAGCAGCCTGTGGAGGCCAAGGAAGATCGAGCAAGATATTCT  322

seq1  TCGCCACCAGTTGTGCTATCTGGCTGGTTTTAAAGTGTTAGAACTGCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCACCAGTTGTGCTATCTGGCTGGTTTTAAAGTGTTAGAACTGCCTG  372

seq1  TTTTCCATTTGCGATGATTTAGGTGGGTGAGAGAGAGGGCAAAACCTCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTTGCGATGATTTAGGTGGGTGAGAGAGAGGGCAAAACCTCGG  422

seq1  TGTCGCCTTTGGCGGTCAGTGTAGCCAATCACCGGGCCAATCAGTCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCCTTTGGCGGTCAGTGTAGCCAATCACCGGGCCAATCAGTCAGTG  472

seq1  GAACTGGAGCAGTAGCTCCAGGCGTTCACCAGAAGAACTGGTTTGGGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGAGCAGTAGCTCCAGGCGTTCACCAGAAGAACTGGTTTGGGCAG  522

seq1  ATTAACAAGCCAGCCTCGGGAACCAGGGGCAGAAGGGAGTTTTGGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACAAGCCAGCCTCGGGAACCAGGGGCAGAAGGGAGTTTTGGCATCT  572

seq1  GGCAAGAGGAACATGCTACCGATTCTAGAACCTAGCCTGACCAGACGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGAGGAACATGCTACCGATTCTAGAACCTAGCCTGACCAGACGTGG  622

seq1  GTTTTTAAAAGCTACACACAACAGGGAATAGCCTTGAATTTATTGGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAAAGCTACACACAACAGGGAATAGCCTTGAATTTATTGGCACA  672

seq1  GGAGACAGCTTCCTGAACGGAATGCCAATAGCTCAGGCACTAAGATCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGCTTCCTGAACGGAATGCCAATAGCTCAGGCACTAAGATCAAC  722

seq1  AATTAATAAACAGGACCTCATAAAACTGAAAATCTTCTGTAAGGCAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAAACAGGACCTCATAAAACTGAAAATCTTCTGTAAGGCAAAGG  772

seq1  ACACCATCAATAGTACAAAATGGTAGTCGACAGAAGTGGAAAAGATTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCAATAGTACAAAATGGTAGTCGACAGAAGTGGAAAAGATTTTC  822

seq1  ACCAACCCTACATCTGACAGAGGGTTGATATCTAAAATATATAAAGAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCCTACATCTGACAGAGGGTTGATATCTAAAATATATAAAGAATC  872

seq1  AAAAACATCAGCAAAGCTGGGCGGTGATGGCGCACGCCTTTAGTCCCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATCAGCAAAGCTGGGCGGTGATGGCGCACGCCTTTAGTCCCAGC  922

seq1  ACTTGGGAGACAGAGGCAGGCGGATTTCTGAGTTCGAAACCAGCCTGGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGACAGAGGCAGGCGGATTTCTGAGTTCGAAACCAGCCTGGTC  972

seq1  TACGAAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAAGTGAGTTCCAGGACAGCCAGAGCTACACAGAGAAACCCTGTCTT  1022

seq1  GAAAAACCAAGAAAAAAAAGGGGGGAGGGGGTACAGATCTAAACAGAGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCAAGAAAAAAAAGGGGGGAGGGGGTACAGATCTAAACAGAGAA  1072

seq1  TTC  1103
      |||
seq2  TTC  1075