BAC Information

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BAC

Clone NameB6Ng01-038O21
ChromosomeX (Build37)
Map Location 159,145,808 - 159,282,388
singlet/doubletdoublet
Overlap geneRbbp7, 4932441K18Rik
Upstream geneRai2, Gm47, Nhs, Reps2, LOC654358, LOC100041557, LOC667630
Downstream geneLOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr, 1700045I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038O21.bB6Ng01-038O21.g
ACCDH866346DH866347
length1,110936
definitionDH866346|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O21, 5' end.DH866347|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(159,145,808 - 159,146,929)(159,281,453 - 159,282,388)
sequence
gaattctaaatttgaggtcagcctgaaatacataatgagatcttgtctca
aagaaaaaccagccaggcagtggtggtgcacgcctttaatcccagcactt
gggaggcagaggcaggcggatttctcagtttgaggccagcctgggctaca
aagtgatctccaggacagccagggctacacagagaaaccctgtctcgaga
aaaccagaaacaaaatcaaagaaaaatcagaaaggggtgtgggaaagcct
ggggtctaagtagagtgctttgctagcatgcatgctggaagcatagctca
cttggtaaagcacaaagctccgggttcaatccccagcagtctggctgtgg
cagaccatgcctataaccccagcactcggcaggatgatcagaagtctaaa
tggggactggggagatggctcagtcagtaaagtgcttgttgcccaaacct
gaggaccttagttttgatcctcagtatctaactaaaaaccagacagtcca
aggacagtggtagcacactcctataatcccagcactcaggaggcacaagg
caggcaaatctctctgaattggaggtcagtctggtctacagagtgagttc
caggacaaccacggctatacagagaaaccctgcctagaaaaaaaagcaaa
acaagcaagcaagcaaacaaacaaacaaaaagccaggtgccacaagcatg
tgcttgcaatcctagctctaaggcagcagagacatgtggagagagagaaa
acgagttcccattactgtacgtactgatgtaaactaaagaagactaaaaa
gggctggggagggctggggagatggctcagtgggtaagagcacccgactg
ctcttccgaaggtctgaagttcaagtcccagcaaccacgtggtggctcaa
aaccatccgtaatgagacctgactccctcttctggagtatctgaggatag
ctacagtgtacttacatgtataataataataaataaataaataaatcttt
ttttaaaaaaagggctggggagatgctcagtgggtaagagcactgactgc
cttcaagttctgcgttcaatccgacaggccacatgtgggcctcaaccacc
tataacgaga
gaattcccagccctggcccggagtcaggagacaagcaagaataggtgctg
agggtgtggggcctaggggcccagtgtagatgactgacgtttgcccctgg
ccctgacctgctttctcaagagctttggcctccccactccttgtgcatcc
actgctgtcactgcacacactccactctctaccttgtattctgcagcatc
tctagcctgttgctatagtcccacctgaacatcagtaaacagcagctaaa
gcataaatgaatgaatggatagatagatagatagatagatagatagatag
atagataaatggaaagagggaaatggctcagtgggtaagagcctttactg
tttgcaagtggacctgagttcaaatccccagccaggtatagccatacaca
cacacacacacacacacacacacacacacacacacacaactttacttttt
tcaaagtctattttttttggttttttttgttttgttttgttttgttttgt
ttttgagacagggtttctctgtatagccctggctgtcctggaactcactc
tgtagaccaggctggcctcgaactcagagatccacctgcctctgcctccc
aagtgctgggattaaagtgtgcaccacaatgccctgcttcaaagtctact
tttaatcatcattaaatactaaaatttttaatatttctttttaaaaattt
atttattatatgtaagtacactggagctatcttcagacactgcagaagac
agtcatatctcaccatggatggttgtgagccaccatgtgaactcgggacc
tttcggaagagcagtcagtgctcttaacctctgagccatctcaccagccc
taaatataaatcttaaacacttaacctcccttattgcccaccacctacca
gaggtagtgggaaagcgagatgggcgggggttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_159145808_159146929
seq2: B6Ng01-038O21.b_49_1158

seq1  GAATTCTAAATTTGAGGTCAGCCTGAAATACATAATGAGATCTTGTCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAATTTGAGGTCAGCCTGAAATACATAATGAGATCTTGTCTCA  50

seq1  AAGAAAAACCAGCCAGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACCAGCCAGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTT  100

seq1  GGGAGGCAGAGGCAGGCGGATTTCTCAGTTTGAGGCCAGCCTGGGCTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCAGAGGCAGGCGGATTTCTCAGTTTGAGGCCAGCCTGGGCTACA  150

seq1  AAGTGATCTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATCTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAGA  200

seq1  AAACCAGAAACAAAATCAAAGAAAAATCAGAAAGGGGTGTGGGAAAGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGAAACAAAATCAAAGAAAAATCAGAAAGGGGTGTGGGAAAGCCT  250

seq1  GGGGTCTAAGTAGAGTGCTTTGCTAGCATGCATGCTGGAAGCATAGCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTAAGTAGAGTGCTTTGCTAGCATGCATGCTGGAAGCATAGCTCA  300

seq1  CTTGGTAAAGCACAAAGCTCCGGGTTCAATCCCCAGCAGTCTGGCTGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTAAAGCACAAAGCTCCGGGTTCAATCCCCAGCAGTCTGGCTGTGG  350

seq1  CAGACCATGCCTATAACCCCAGCACTCGGCAGGATGATCAGAAGTCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCATGCCTATAACCCCAGCACTCGGCAGGATGATCAGAAGTCTAAA  400

seq1  TGGGGACTGGGGAGATGGCTCAGTCAGTAAAGTGCTTGTTGCCCAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTGGGGAGATGGCTCAGTCAGTAAAGTGCTTGTTGCCCAAACCT  450

seq1  GAGGACCTTAGTTTTGATCCTCAGTATCTAACTAAAAACCAGACAGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCTTAGTTTTGATCCTCAGTATCTAACTAAAAACCAGACAGTCCA  500

seq1  AGGACAGTGGTAGCACACTCCTATAATCCCAGCACTCAGGAGGCACAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGTGGTAGCACACTCCTATAATCCCAGCACTCAGGAGGCACAAGG  550

seq1  CAGGCAAATCTCTCTGAATTGGAGGTCAGTCTGGTCTACAGAGTGAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAATCTCTCTGAATTGGAGGTCAGTCTGGTCTACAGAGTGAGTTC  600

seq1  CAGGACAACCACGGCTATACAGAGAAACCCTGCCTAGAAAAAAAAGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAACCACGGCTATACAGAGAAACCCTGCCTAGAAAAAAAAGCAAA  650

seq1  ACAAGCAAGCAAGCAAACAAACAAACAAAAAGCCAGGTGCCACAAGCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAAGCAAGCAAACAAACAAACAAAAAGCCAGGTGCCACAAGCATG  700

seq1  TGCTTGCAATCCTAGCTCTAAGGCAGCAGAGACATGTGGAGAGAGAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCAATCCTAGCTCTAAGGCAGCAGAGACATGTGGAGAGAGAGAAA  750

seq1  ACGAGTTCCCATTACTGTACGTACTGATGTAAACTAAAGAAGACTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTTCCCATTACTGTACGTACTGATGTAAACTAAAGAAGACTAAAAA  800

seq1  GGGCTGGGGAGGGCTGGGGAGATGGCTCAGTGGGTAAGAGCACCCGACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGGAGGGCTGGGGAGATGGCTCAGTGGGTAAGAGCACCCGACTG  850

seq1  CTCTTCCGAAGGTCTGAAGTTCAAGTCCCAGCAACCACGTGGTGGCTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCGAAGGTCTGAAGTTCAAGTCCCAGCAACCACGTGGTGGCTCAA  900

seq1  AACCATCCGTAATGAGACCTGACTCCCTCTTCTGGAGTATCTGAGGATAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCGTAATGAGACCTGACTCCCTCTTCTGGAGTATCTGAGGATAG  950

seq1  CTACAGTGTACTTACATGTAATAAATAAATAAATAAATAAATAAATAAAT  1000
      ||||||||||||||||||||   |||||   |||||||||||||||||||
seq2  CTACAGTGTACTTACATGTA--TAATAA--TAATAAATAAATAAATAAAT  996

seq1  CTTTTTTTAAAAAAAAGGGCTGGGGAGATGGCTCAGTGGGTAAGAGCACT  1050
      |||||||| |||||||||||||||||||| ||||||||||||||||||||
seq2  CTTTTTTT-AAAAAAAGGGCTGGGGAGAT-GCTCAGTGGGTAAGAGCACT  1044

seq1  GACTGCTTTTCCAAAGGTCCTGCGTTCAAATCCCAGCAGCCACATGGTGG  1100
      |||||| ||  |||  || |||||||| ||||| |   ||||||| ||||
seq2  GACTGCCTT--CAA--GTTCTGCGTTC-AATCCGACAGGCCACAT-GTGG  1088

seq1  CTCACAACCACCCATAACGAGA  1122
        | |||||||| |||||||||
seq2  GCCTCAACCACCTATAACGAGA  1110

seq1: chrX_159281453_159282388
seq2: B6Ng01-038O21.g_67_1002 (reverse)

seq1  CCCCAACCCCCCGCCCATCCTCGCTTTCCCACTACCTCTGGTAGGTGGTG  50
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCCAA-CCCCCGCCCAT-CTCGCTTTCCCACTACCTCTGGTAGGTGGTG  48

seq1  GGCTATAAGGGAGGTTAAAGTGTTTAAGAATTTAATATTTAGGGGCTGGT  100
      ||| |||||||||||| ||||||||||||  || ||||||| ||||||||
seq2  GGCAATAAGGGAGGTT-AAGTGTTTAAGA--TTTATATTTA-GGGCTGGT  94

seq1  GAGATGGCTCAGAGGTTAAGAGCACTGACTGCTCTTCCG-AAGGTCCCGA  149
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAGATGGCTCAGAGGTTAAGAGCACTGACTGCTCTTCCGAAAGGTCCCGA  144

seq1  GTTCACATGGTGGCTCACAACCATCCATGGTGAGATATGACTGTCTTCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACATGGTGGCTCACAACCATCCATGGTGAGATATGACTGTCTTCTG  194

seq1  CAGTGTCTGAAGATAGCTCCAGTGTACTTACATATAATAAATAAATTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTGAAGATAGCTCCAGTGTACTTACATATAATAAATAAATTTTT  244

seq1  AAAAAG-AATATTAAAAATTTTAGTATTTAATGATGATTAAAAGTAGACT  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAATATTAAAAATTTTAGTATTTAATGATGATTAAAAGTAGACT  294

seq1  TTGAAGCAGGGCATTGTGGTGCACACTTTAATCCCAGCACTTGGGAGGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGCAGGGCATTGTGGTGCACACTTTAATCCCAGCACTTGGGAGGCA  344

seq1  GAGGCAGGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGT  394

seq1  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAACAAAACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAACAAAACA  444

seq1  AAACAAAACAAAACAAAAAAAACCAAAAAAAATAGACTTTGAAAAAAGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAACAAAAAAAACCAAAAAAAATAGACTTTGAAAAAAGTA  494

seq1  AAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATG  544

seq1  GCTATACCTGGCTGGGGATTTGAACTCAGGTCCACTTGCAAACAGTAAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACCTGGCTGGGGATTTGAACTCAGGTCCACTTGCAAACAGTAAAG  594

seq1  GCTCTTACCCACTGAGCCATTTCCCTCTTTCCATT----TATCTATCTAT  644
      |||||||||||||||||||||||||||||||||||    |||||||||||
seq2  GCTCTTACCCACTGAGCCATTTCCCTCTTTCCATTTATCTATCTATCTAT  644

seq1  CTATCTATCTATCTATCTATCTATCCATTCATTCATTTATGCTTTAGCTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCCATTCATTCATTTATGCTTTAGCTG  694

seq1  CTGTTTACTGATGTTCAGGTGGGACTATAGCAACAGGCTAGAGATGCTGC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTACTGATGTTCAGGTGGGACTATAGCAACAGGCTAGAGATGCTGC  744

seq1  AGAATACAAGGTAGAGAGTGGAGTGTGTGCAGTGACAGCAGTGGATGCAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACAAGGTAGAGAGTGGAGTGTGTGCAGTGACAGCAGTGGATGCAC  794

seq1  AAGGAGTGGGGAGGCCAAAGCTCTTGAGAAAGCAGGTCAGGGCCAGGGGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGGGGAGGCCAAAGCTCTTGAGAAAGCAGGTCAGGGCCAGGGGC  844

seq1  AAACGTCAGTCATCTACACTGGGCCCCTAGGCCCCACACCCTCAGCACCT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTCAGTCATCTACACTGGGCCCCTAGGCCCCACACCCTCAGCACCT  894

seq1  ATTCTTGCTTGTCTCCTGACTCCGGGCCAGGGCTGGGAATTC  936
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGCTTGTCTCCTGACTCCGGGCCAGGGCTGGGAATTC  936