BAC Information

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BAC

Clone NameB6Ng01-039E21
ChromosomeX (Build37)
Map Location 64,588,981 - 64,615,051
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk2, LOC666824, LOC627734, EG666828
Downstream geneGm1140, LOC666842, LOC619873, 4933436I01Rik, LOC100040194, EG236844, LOC385372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039E21.bB6Ng01-039E21.g
ACCDH866609DH866610
length1,1231,028
definitionDH866609|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E21, 5' end.DH866610|Mus musculus domesticus DNA, BAC clone: B6Ng01-039E21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,588,981 - 64,590,119)(64,614,241 - 64,615,051)
sequence
gaattcaatatcctggtatccatgggtaccaggaatgcatatggtacacg
tacatagaaatttgcagtgaaactaatgtacataaaatataaataaatct
gaaaaaaaaaacaaactatggggtagaaaatggaatgactggcttatttt
caggcagagtagatataggaacagaataaattttagttaatcataattat
agggtataaataggccaaatggtttatgtaattaggtttaaatcatagaa
gaggttcacttgagttgtaaccaacatatgtaataagcaaaaggtcttat
ttaatctcagcattataatattttaataatcttttattaaattttaactc
aatttttactttattccctcacaagactcaaaggcaatgaaaatttctgt
ctgaattctccaagcccagtagttaaaaattattgattatgctaacatct
attcttattaacttgctaatgtagaaagacgtcttccttctttatttata
atctttttttagcatctttgattcaagaatgccatccacctgtattgatg
atgccaggcagaagtgcaataattaccaacttcatgtgagctgaaaacta
ctagctatgctgtgtcacaatgtaacatgaacctagagtagttgctatgg
tagggaaaagattcctgctgcaaagcttgtttttgaaactatttttacag
atgactcagaaactgaaattaaatatttataacctattcattgtattgcg
gaactaaaagtgtccatagagacaatctagtctaaccaccccatatttta
gaaattgatactgagtccaaaggaggtataaatgaaacaaaatgaaacga
aaccaacatcacataaattgagatatttagagactctagcttaaaaatag
aatcatggaatttatacagctttagactcttaatacaaattgtttttttt
cttctattgtttgaagaaaaatatttcatttaatatttcacagagggctg
agtatttgactcaacaataaaatatatgaccagcatatactgagttctat
ccagcactaagaacacaatttacaagcactagattcctctaatcaggaaa
cgaggataaatatactgctttaa
gaattctttgtttagcactgagccccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttctttttatatattggatattagtcccc
tatcagaatcttacattgaggtactcaatttcatttactctactggattt
gaggtttggctttgatctgattatttttgttccctgcttctttttttata
taagaaaatgtgcaacattttttccactttaaaggaccccagagataagc
aatttttgaatattttttggaccatgagcttctagagaaatggaatttaa
aggactatgggagctttaattttatattatacattttggtattaacatga
gatcttggtaatgaacaggaaaggaaagtttatatagtttatattgacac
aaacaatgacatgtttgtgtgtcaagtagagaaggtatgaattttattga
ttagtttctattgtggagctggcacaaatttaatacgcctgggaaatctg
actctcaaggaattttctagatcagattagcattttggcatatctaggaa
cattttttaaatttcttttttaaaatctcttaatgatgtagcacatccca
tggtggcacacatacgcacgcacgcacacacacacacacacacacacaca
cacacacacacacacactcacatacacaaccatcaggttctatttagaat
gtttagattggccaagtattccagggcatgggcctgccttggaatgtcgt
tgaaattcccagtgacactcagttttcctggaggggaaaccaggaaaggg
gataacatataaaatataaataaataaataaaatattcaattaaaaaaat
ctttaaaaattccaagtgacactccattggagaaaatgtatttttgcctt
tttcatcaggtatcaattgaaacattttagtatatcttgatcagacagta
ctttagagccatcctttatcatttcttatcatgtggatcatctgatttgt
atcattgagatagtctgagaatagtatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_64588981_64590119
seq2: B6Ng01-039E21.b_43_1165

seq1  GAATTCAATATCCTGGTATCCATGGGTACCAGGAATGCATATGGTACACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATCCTGGTATCCATGGGTACCAGGAATGCATATGGTACACG  50

seq1  TACATAGAAATTTGCAGTGAAACTAATGTACATAAAATATAAATAAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAAATTTGCAGTGAAACTAATGTACATAAAATATAAATAAATCT  100

seq1  GAAAAAAAAAACAAACTATGGGGTAGAAAATGGAATGACTGGCTTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAACAAACTATGGGGTAGAAAATGGAATGACTGGCTTATTTT  150

seq1  CAGGCAGAGTAGATATAGGAACAGAATAAATTTTAGTTAATCATAATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGAGTAGATATAGGAACAGAATAAATTTTAGTTAATCATAATTAT  200

seq1  AGGGTATAAATAGGCCAAATGGTTTATGTAATTAGGTTTAAATCATAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTATAAATAGGCCAAATGGTTTATGTAATTAGGTTTAAATCATAGAA  250

seq1  GAGGTTCACTTGAGTTGTAACCAACATATGTAATAAGCAAAAGGTCTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCACTTGAGTTGTAACCAACATATGTAATAAGCAAAAGGTCTTAT  300

seq1  TTAATCTCAGCATTATAATATTTTAATAATCTTTTATTAAATTTTAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCTCAGCATTATAATATTTTAATAATCTTTTATTAAATTTTAACTC  350

seq1  AATTTTTACTTTATTCCCTCACAAGACTCAAAGGCAATGAAAATTTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTACTTTATTCCCTCACAAGACTCAAAGGCAATGAAAATTTCTGT  400

seq1  CTGAATTCTCCAAGCCCAGTAGTTAAAAATTATTGATTATGCTAACATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTCTCCAAGCCCAGTAGTTAAAAATTATTGATTATGCTAACATCT  450

seq1  ATTCTTATTAACTTGCTAATGTAGAAAGACGTCTTCCTTCTTTATTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTATTAACTTGCTAATGTAGAAAGACGTCTTCCTTCTTTATTTATA  500

seq1  ATCTTTTTTTAGCATCTTTGATTCAAGAATGCCATCCACCTGTATTGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTTTAGCATCTTTGATTCAAGAATGCCATCCACCTGTATTGATG  550

seq1  ATGCCAGGCAGAAGTGCAATAATTACCAACTTCATGTGAGCTGAAAACTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGGCAGAAGTGCAATAATTACCAACTTCATGTGAGCTGAAAACTA  600

seq1  CTAGCTATGCTGTGTCACAATGTAACATGAACCTAGAGTAGTTGCTATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTATGCTGTGTCACAATGTAACATGAACCTAGAGTAGTTGCTATGG  650

seq1  TAGGGAAAAGATTCCTGCTGCAAAGCTTGTTTTTGAAACTATTTTTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAAAGATTCCTGCTGCAAAGCTTGTTTTTGAAACTATTTTTACAG  700

seq1  ATGACTCAGAAACTGAAATTAAATATTTATAACCTATTCATTGTATTGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAGAAACTGAAATTAAATATTTATAACCTATTCATTGTATTGCG  750

seq1  GAACTAAAAGTGTCCATAGAGACAATCTAGTCTAACCACCCCATATTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAAGTGTCCATAGAGACAATCTAGTCTAACCACCCCATATTTTA  800

seq1  GAAATTGATACTGAGTCCAAAGGAGGTATAAATGAAACAAAATGAAACGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGATACTGAGTCCAAAGGAGGTATAAATGAAACAAAATGAAACGA  850

seq1  AACCAACATCACATAAATTGAGATATTTAGAGACTCTAGCTTAAAAATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAACATCACATAAATTGAGATATTTAGAGACTCTAGCTTAAAAATAG  900

seq1  AATCATGGAATTTATACAGCTTTAGACTCTTAATACAAATTGTTTTTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGGAATTTATACAGCTTTAGACTCTTAATACAAATTGTTTTTTTT  950

seq1  TCTTTCTATTGTTTTGAAGAAAAATATTTCATTTAATATTTCACAGAAGG  1000
         |||||||| |||||||||||||||||||||||||||||||||| |||
seq2  --CTTCTATTG-TTTGAAGAAAAATATTTCATTTAATATTTCACAG-AGG  996

seq1  GCTGAGTATTTGACTCAACAATAAAATATATGACCAGCATATACTGAGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTATTTGACTCAACAATAAAATATATGACCAGCATATACTGAGTT  1046

seq1  CTATCCCAGCACTAAGAACACAAATTTTACAAGTCACCTAAGTATCCTTC  1100
      |||| ||||||||||||||||||  |||||||| || |||   || | ||
seq2  CTAT-CCAGCACTAAGAACACAA--TTTACAAG-CA-CTA--GATTCCTC  1089

seq1  TAATCAGGAAAACAGAGTGATAATATATACTGTCTTTAA  1139
      |||||||||||  ||   ||||| |||||||| ||||||
seq2  TAATCAGGAAACGAG---GATAA-ATATACTG-CTTTAA  1123

seq1: chrX_64614241_64615051
seq2: B6Ng01-039E21.g_109_919 (reverse)

seq1  TTAAAGATTTTTTTAATTGAATATTTTATTTATTTATTTATATTTTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTTTTTTAATTGAATATTTTATTTATTTATTTATATTTTATAT  50

seq1  GTTATCCCCTTTCCTGGTTTCCCCTCCAGGAAAACTGAGTGTCACTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCCTTTCCTGGTTTCCCCTCCAGGAAAACTGAGTGTCACTGGGA  100

seq1  ATTTCAACGACATTCCAAGGCAGGCCCATGCCCTGGAATACTTGGCCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACGACATTCCAAGGCAGGCCCATGCCCTGGAATACTTGGCCAAT  150

seq1  CTAAACATTCTAAATAGAACCTGATGGTTGTGTATGTGAGTGTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATTCTAAATAGAACCTGATGGTTGTGTATGTGAGTGTGTGTGTG  200

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTATGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTATGTGTG  250

seq1  CCACCATGGGATGTGCTACATCATTAAGAGATTTTAAAAAAGAAATTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCATGGGATGTGCTACATCATTAAGAGATTTTAAAAAAGAAATTTAA  300

seq1  AAAATGTTCCTAGATATGCCAAAATGCTAATCTGATCTAGAAAATTCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTCCTAGATATGCCAAAATGCTAATCTGATCTAGAAAATTCCTT  350

seq1  GAGAGTCAGATTTCCCAGGCGTATTAAATTTGTGCCAGCTCCACAATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCAGATTTCCCAGGCGTATTAAATTTGTGCCAGCTCCACAATAGA  400

seq1  AACTAATCAATAAAATTCATACCTTCTCTACTTGACACACAAACATGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATCAATAAAATTCATACCTTCTCTACTTGACACACAAACATGTCA  450

seq1  TTGTTTGTGTCAATATAAACTATATAAACTTTCCTTTCCTGTTCATTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTGTCAATATAAACTATATAAACTTTCCTTTCCTGTTCATTACC  500

seq1  AAGATCTCATGTTAATACCAAAATGTATAATATAAAATTAAAGCTCCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCATGTTAATACCAAAATGTATAATATAAAATTAAAGCTCCCAT  550

seq1  AGTCCTTTAAATTCCATTTCTCTAGAAGCTCATGGTCCAAAAAATATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTAAATTCCATTTCTCTAGAAGCTCATGGTCCAAAAAATATTCA  600

seq1  AAAATTGCTTATCTCTGGGGTCCTTTAAAGTGGAAAAAATGTTGCACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCTTATCTCTGGGGTCCTTTAAAGTGGAAAAAATGTTGCACATT  650

seq1  TTCTTATATAAAAAAAGAAGCAGGGAACAAAAATAATCAGATCAAAGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATATAAAAAAAGAAGCAGGGAACAAAAATAATCAGATCAAAGCCA  700

seq1  AACCTCAAATCCAGTAGAGTAAATGAAATTGAGTACCTCAATGTAAGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAAATCCAGTAGAGTAAATGAAATTGAGTACCTCAATGTAAGATT  750

seq1  CTGATAGGGGACTAATATCCAATATATAAAAAGAACTCAAGAAGGTGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGGGACTAATATCCAATATATAAAAAGAACTCAAGAAGGTGGAC  800

seq1  TTCAGAAAATC  811
      |||||||||||
seq2  TTCAGAAAATC  811