BAC Information

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BAC

Clone NameB6Ng01-039H11
ChromosomeX (Build37)
Map Location 141,197,815 - 141,198,948
singlet/doubletsinglet
Overlap geneZcchc16
Upstream genePak3, Capn6, Dcx, LOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436
Downstream geneLOC666655, LOC623591, Lhfpl1, Amot, EG434860, LOC100039313
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039H11.bB6Ng01-039H11.g
ACCDH866731DH866732
length1,0261,116
definitionDH866731|Mus musculus domesticus DNA, BAC clone: B6Ng01-039H11, 5' end.DH866732|Mus musculus domesticus DNA, BAC clone: B6Ng01-039H11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatcaatggatagaccactgatgacaatgactccactcttttgag
aaggatcggctgctaatgggttgccatagaatatatgagcccactcatct
ccatggataactttgtagtcttcattgtttctaagcttccctcttacttt
aataaatttccatcctgtctccagagcaatggctttcttagttgctgaaa
acatttggtaaaatctgagacacatgactccatatgaatacttgaaagca
actatttccatattcccagctttaaaatggactatttcttcagccttgtt
tcaagtagcctcttgagaagcgatattcctaccatattcatatggtaatt
tttctgagatttaaagagccaatgatagaacatgatcaaactcggaattg
ttatcttagaaatgagatcaaaaccaaaatgacagcacaagttgtctagg
atgtggagaaagaggaacactcctccattgctggtgggattgcaaatagg
tacaagcactctggaaatcaatctggaggtttctcaaaaaattggaaata
gatctacctaaggacccagaaataccacttttgggaatatacccaaaaga
taccccaccataccacaggagcacatgttccactgtgttcatggtagcct
tgtttgtgatagctagaagctggaaacaacacagatgtcccacaacagaa
gaatggatacagaaaatgtggttcatttacacaacggaatactactcagc
tattaagaatgaggacatcctgagttttgcaggcaaatgtatggaactag
aaaatatcatcctgagttagggaaatcagacacaaaaggatatgcatggt
atgtactcacaagtaagtagatgttagacaaaaaaaaaaagtgccaaata
cccaagatatagtccacagaactagaaaaggtccacaagctgaagggccc
aagtgaggatgcctcagtcccacttgtgacagaggaaaaaatcacaaggg
gagggggagggatcctgggagggaaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttgcaaacatttctaatcccaactttctgacctatagcttgcaaaccact
ctactaggagaattttatgttttttttttataataattccagaatttgga
tttttttccttgactcctgccttgtgactaaatcaaaattatggttttgt
ttgccagtgttggcaatttctgtgcatcaaaagcccatagcacagagcca
tctatacctatgggacagaatcctggccattgcaggtcaatggactggcc
atgatgtaagcttctcattgctgcaattttgaagtaaaaatatgaatgaa
caaggtccaccactgtatcttggaaactctgggtgataataagtattagg
ctgacgaaaacagagtcaatggtgtaagtgtttgcccttttaagtgtttt
ctatatcctccagaaaatgttggagcaatgggaagagtctgtatgttctc
tgtatttttctctcactctcaccatggtatttgctatactgtgcagtcat
ttatttaaatacatgtttctttcctgtaccacaaagacttatattgtcct
ttcagtcatattcactaagcacatgtcctgaccattgtcttatattaaca
tatgttaaatgaataccagatgtttttgtcatagggtaactatatgaaag
ataagtgcaattttaatagatctcaaggagccctgattcttcccactcac
tttcgtcttgatggaacatttttgtctctggaaacttacttgtacagtgc
tttaggcttgggattcattaggtcctgctaccatgctcaaaacaaggaat
aacagaagttttacactgttcccagaatgatcagactgattgtgacaaaa
tgtaaaatcctcatattttggtcttctatgctaagagatgaaatatagtc
aagtaaatttggtcagtggtcttcaagggaaaagactgatatttgtgcac
atactgcaggggttagacagggcagcattcagtctgtcatcatagaggac
atttatagttggaactgaaatatctacaatgccaatagccagactaatta
ctttgctatagttaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_141197815_141198948
seq2: B6Ng01-039H11.g_66_1181

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50

seq1  TTGCAAACATTTCTAATCCCAACTTTCTGACCTATAGCTTGCAAACCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAACATTTCTAATCCCAACTTTCTGACCTATAGCTTGCAAACCACT  100

seq1  CTACTAGGAGAATTTTATGTTTTTTTTTTATAATAATTCCAGAATTTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAGGAGAATTTTATGTTTTTTTTTTATAATAATTCCAGAATTTGGA  150

seq1  TTTTTTTCCTTGACTCCTGCCTTGTGACTAAATCAAAATTATGGTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCCTTGACTCCTGCCTTGTGACTAAATCAAAATTATGGTTTTGT  200

seq1  TTGCCAGTGTTGGCAATTTCTGTGCATCAAAAGCCCATAGCACAGAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGTGTTGGCAATTTCTGTGCATCAAAAGCCCATAGCACAGAGCCA  250

seq1  TCTATACCTATGGGACAGAATCCTGGCCATTGCAGGTCAATGGACTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACCTATGGGACAGAATCCTGGCCATTGCAGGTCAATGGACTGGCC  300

seq1  ATGATGTAAGCTTCTCATTGCTGCAATTTTGAAGTAAAAATATGAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTAAGCTTCTCATTGCTGCAATTTTGAAGTAAAAATATGAATGAA  350

seq1  CAAGGTCCACCACTGTATCTTGGAAACTCTGGGTGATAATAAGTATTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCCACCACTGTATCTTGGAAACTCTGGGTGATAATAAGTATTAGG  400

seq1  CTGACGAAAACAGAGTCAATGGTGTAAGTGTTTGCCCTTTTAAGTGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACGAAAACAGAGTCAATGGTGTAAGTGTTTGCCCTTTTAAGTGTTTT  450

seq1  CTATATCCTCCAGAAAATGTTGGAGCAATGGGAAGAGTCTGTATGTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCCTCCAGAAAATGTTGGAGCAATGGGAAGAGTCTGTATGTTCTC  500

seq1  TGTATTTTTCTCTCACTCTCACCATGGTATTTGCTATACTGTGCAGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTTCTCTCACTCTCACCATGGTATTTGCTATACTGTGCAGTCAT  550

seq1  TTATTTAAATACATGTTTCTTTCCTGTACCACAAAGACTTATATTGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAATACATGTTTCTTTCCTGTACCACAAAGACTTATATTGTCCT  600

seq1  TTCAGTCATATTCACTAAGCACATGTCCTGACCATTGTCTTATATTAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCATATTCACTAAGCACATGTCCTGACCATTGTCTTATATTAACA  650

seq1  TATGTTAAATGAATACCAGATGTTTTTGTCATAGGGTAACTATATGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAAATGAATACCAGATGTTTTTGTCATAGGGTAACTATATGAAAG  700

seq1  ATAAGTGCAATTTTAATAGATCTCAAGGAGCCCTGATTCTTCCCACTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGCAATTTTAATAGATCTCAAGGAGCCCTGATTCTTCCCACTCAC  750

seq1  TTTCGTCTTGATGGAACATTTTTGTCTCTGGAAACTTACTTGTACAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTCTTGATGGAACATTTTTGTCTCTGGAAACTTACTTGTACAGTGC  800

seq1  TTTAGGCTTGGGATTCATTAGGTCCTGCTACCATGCTCAAAACAAGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGCTTGGGATTCATTAGGTCCTGCTACCATGCTCAAAACAAGGAAT  850

seq1  AACAGAAGTTTTACACTGTTCCCAGAATGATCAGACTGAATGTGACAAAA  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACAGAAGTTTTACACTGTTCCCAGAATGATCAGACTGATTGTGACAAAA  900

seq1  TGTAAAATCCTCATATTTTGGTCTTCTATGCTAAGAGAATGAAATATAGT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTAAAATCCTCATATTTTGGTCTTCTATGCTAAGAG-ATGAAATATAGT  949

seq1  CAAGTAAATTTGGTCAGTGGTCTTCAAGGGAAAAGACTGATATTTGTTGC  1000
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  CAAGTAAATTTGGTCAGTGGTCTTCAAGGGAAAAGACTGATATTTGT--G  997

seq1  CACATACTGCAGGGGGTAGGACAGGGCAGCAATTCAGTTCCTGTCATCAT  1050
      ||||||||||||||| || ||||||||||| |||||||  ||||||||||
seq2  CACATACTGCAGGGGTTA-GACAGGGCAGC-ATTCAGT--CTGTCATCAT  1043

seq1  AGA-GACATTTTATAGTTGGAAACTGAAAATATCCTACAAATGCCACATA  1099
      ||| |||| ||||||||||| ||||| |||||| |||| ||||||| |||
seq2  AGAGGACA-TTTATAGTTGG-AACTG-AAATAT-CTAC-AATGCCA-ATA  1087

seq1  AGGCCAAGACTAATTACTTTGGCCTATAGGTTAGA  1134
        ||| |||||||||||||||  ||||| ||||||
seq2  --GCC-AGACTAATTACTTTG--CTATA-GTTAGA  1116