MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-040F11
Chromosome	X (Build37)
Map Location	25,702,007 - 25,703,179
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Xmr, LOC100038968, LOC100038977, LOC100038997, LOC664810, EG382275, LOC100039030
Downstream gene	LOC100039065, LOC100039078, LOC100039003, Slx, LOC100039120, LOC619914, LOC100039039, LOC619991, LOC664844, LOC100042154, EG664861
Link	Open Mouse BAC browser

Click to get alignment info.

name	Xmr (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:382277
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038968 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038968
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 5 Proteins pseudo : _no_value

name	LOC100038977 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 3 ESTs, 5 Proteins

name	LOC100038997 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins

name	LOC664810 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664810
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins pseudo : _no_value

name	EG382275 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382275 MGI:3703318
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039030 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 9 ESTs, 5 Proteins

name	LOC100039065 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 13 ESTs, 5 Proteins

name	LOC100039078 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 90 ESTs, 1 Protein

name	LOC100039003 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039003
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins

name	Slx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664829 MGI:99543
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 7 ESTs, 5 Proteins

name	LOC100039120 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039120
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 10 ESTs, 5 Proteins

name	LOC619914 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins pseudo : _no_value

name	LOC100039039 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039039
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	LOC619991 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:619991
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 10 ESTs, 5 Proteins

name	LOC664844 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:664844
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 1 Protein pseudo : _no_value

name	LOC100042154 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042154
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 69 ESTs

name	EG664861 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:664861 MGI:3646621
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins pseudo : _no_value

name	Xmr (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:100816606 GeneID:382277
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Xmr protein transcript_id : NM_001040669.1

name	LOC100038977 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271231 GeneID:100038977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 3 ESTs, 5 Proteins product : hypothetical protein LOC100038977, transcript variant 2 transcript_id : XM_001472083.1

name	LOC100038977 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271229 GeneID:100038977
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 2 ESTs, 5 Proteins product : hypothetical protein LOC100038977, transcript variant 1 transcript_id : XM_001472060.1

name	LOC100038997 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271233 GeneID:100038997
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins product : similar to XMR transcript_id : XM_001472117.1

name	EG382275 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801953 GeneID:382275 MGI:3703318
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG382275 transcript_id : NM_001025607.2

name	LOC100039030 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271240 GeneID:100039030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 9 ESTs, 5 Proteins product : similar to Xmr protein, transcript variant 2 transcript_id : XM_001472195.1

name	LOC100039030 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271238 GeneID:100039030
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 7 ESTs, 5 Proteins product : similar to Xmr protein, transcript variant 1 transcript_id : XM_001472174.1

name	LOC100039065 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271246 GeneID:100039065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 12 ESTs, 5 Proteins product : similar to Sycp3 like X-linked, transcript variant 2 transcript_id : XM_001472332.1

name	LOC100039065 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271244 GeneID:100039065
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 11 ESTs, 5 Proteins product : similar to Sycp3 like X-linked, transcript variant 1 transcript_id : XM_001472304.1

name	LOC100039078 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271248 GeneID:100039078
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 90 ESTs, 1 Protein product : similar to RIKEN cDNA 1810037I17 gene transcript_id : XM_001472358.1

name	LOC100039003 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271235 GeneID:100039003
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins product : similar to Xmr protein transcript_id : XM_001472071.1

name	Slx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407127 GeneID:664829 MGI:99543
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 6 ESTs, 5 Proteins product : Sycp3 like X-linked, transcript variant 2 transcript_id : XM_973255.1

name	Slx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94407129 GeneID:664829 MGI:99543
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 7 ESTs, 5 Proteins product : Sycp3 like X-linked, transcript variant 3 transcript_id : XM_973298.1

name	LOC100039120 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271252 GeneID:100039120
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 10 ESTs, 5 Proteins product : similar to Xlr-related, meiosis regulated, transcript variant 2 transcript_id : XM_001472448.1

name	LOC100039120 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271250 GeneID:100039120
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 5 Proteins product : similar to Xlr-related, meiosis regulated, transcript variant 1 transcript_id : XM_001472427.1

name	LOC100039039 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271242 GeneID:100039039
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : similar to pol protein transcript_id : XM_001472138.1

name	LOC619991 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94407135 GeneID:619991
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 10 ESTs, 5 Proteins product : novel protein similar to Xlr-related, meiosis regulated (Xmr), transcript variant 1 transcript_id : XM_884246.2

name	LOC619991 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271255 GeneID:619991
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 8 ESTs, 5 Proteins product : novel protein similar to Xlr-related, meiosis regulated (Xmr) transcript_id : XM_001472499.1

name	LOC100042154 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271335 GeneID:100042154
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 64 ESTs product : hypothetical protein LOC100042154, transcript variant 1 transcript_id : XM_001477451.1

name	LOC100042154 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149271333 GeneID:100042154
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs product : hypothetical protein LOC100042154, transcript variant 2 transcript_id : XM_001477462.1

name	Xmr (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:100816607 GeneID:382277
definition	codon_start : 1 product : Xmr protein protein_id : NP_001035759.1

name	LOC100038977 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271230 GeneID:100038977
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001472110.1

name	LOC100038977 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271232 GeneID:100038977
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001472133.1

name	LOC100038997 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271234 GeneID:100038997
definition	codon_start : 1 product : similar to XMR protein_id : XP_001472167.1

name	EG382275 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71037366 GeneID:382275 MGI:3703318
definition	codon_start : 1 note : novel protein similar to Xlr-related, meiosis regulated (Xmr) product : similar to XMR protein_id : NP_001020778.1

name	LOC100039030 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271239 GeneID:100039030
definition	codon_start : 1 product : similar to Xmr protein isoform 1 protein_id : XP_001472224.1

name	LOC100039030 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271241 GeneID:100039030
definition	codon_start : 1 product : similar to Xmr protein isoform 2 protein_id : XP_001472245.1

name	LOC100039065 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271245 GeneID:100039065
definition	codon_start : 1 product : similar to Sycp3 like X-linked isoform 1 protein_id : XP_001472354.1

name	LOC100039065 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271247 GeneID:100039065
definition	codon_start : 1 product : similar to Sycp3 like X-linked isoform 2 protein_id : XP_001472382.1

name	LOC100039078 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271249 GeneID:100039078
definition	codon_start : 1 product : similar to RIKEN cDNA 1810037I17 gene protein_id : XP_001472408.1

name	LOC100039003 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271236 GeneID:100039003
definition	codon_start : 1 product : similar to Xmr protein protein_id : XP_001472121.1

name	Slx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407128 GeneID:664829 MGI:99543
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_978349.1

name	Slx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94407130 GeneID:664829 MGI:99543
definition	codon_start : 1 product : hypothetical protein isoform 3 protein_id : XP_978392.1

name	LOC100039120 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271251 GeneID:100039120
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001472477.1

name	LOC100039120 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271253 GeneID:100039120
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001472498.1

name	LOC100039039 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271243 GeneID:100039039
definition	codon_start : 1 product : similar to pol protein protein_id : XP_001472188.1

name	LOC619991 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271256 GeneID:619991
definition	codon_start : 1 product : hypothetical protein LOC619991 protein_id : XP_001472549.1

name	LOC619991 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:83000366 GeneID:619991
definition	codon_start : 1 product : hypothetical protein LOC619991 isoform 1 protein_id : XP_889339.1

name	LOC100042154 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271334 GeneID:100042154
definition	codon_start : 1 product : hypothetical protein isoform 2 protein_id : XP_001477512.1

name	LOC100042154 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149271336 GeneID:100042154
definition	codon_start : 1 product : hypothetical protein isoform 1 protein_id : XP_001477501.1

name	LOC100038968 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271228 GeneID:100038968
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 5 Proteins product : similar to Sycp3 like X-linked pseudo : _no_value transcript_id : XR_030540.1

name	LOC664810 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271237 GeneID:664810
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins product : hypothetical LOC664810 pseudo : _no_value transcript_id : XR_001649.2

name	LOC619914 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271254 GeneID:619914
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs, 5 Proteins product : similar to Sycp3 like X-linked pseudo : _no_value transcript_id : XR_030717.1

name	LOC664844 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149271257 GeneID:664844
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs, 1 Protein product : hypothetical LOC664844 pseudo : _no_value transcript_id : XR_030752.1

name	EG664861 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149271337 GeneID:664861 MGI:3646621
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs, 5 Proteins product : predicted gene, EG664861 pseudo : _no_value transcript_id : XR_035688.1

clone name	MSMg01-451D23
singlet/doublet	singlet
plural/unique	plural

clone name	B6Ng01-269L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348C17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-043I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125L18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-127D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-349L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-102F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-150L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-101N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-252O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251A09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199O13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227A15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-007I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252L03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158H22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-308L17
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-040F11.b	B6Ng01-040F11.g
ACC	DH867341	DH867342
length	1,163	996
definition	DH867341\|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F11, 5' end.	DH867342\|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F11, 3' end.
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattccaaaattcatactgacacttgatgtcatgttgaggtaagtgttc ttatgtagcactgaatatcagattgaagcctcatatcccacctgccacag gtaattttgttgatgcccctgatactttcatgtagcaaatgctatcatgc atgaaatggacaatattcttactaccaccaaaagaggtagtgatctcagt aatctatcttgttcctggaaaagcgttttatgaccctaatttttttatgc cccctaaatcaatgctgatgtcactaatatatacctggcaacagacccca tggtattgtctgagaatattgttgacaatggcaaaattattgccagtgat cctagctgacactggaaccatgttgacttcactaatgcacaggtgccaca gaaatgtggatgatgtgaatcatgcatcctgcctctagtatccatgttga aatccattgtatgtgttgctcctgaagggactgtaaatgtgaagaatccc tgagaccgtcagaatcttcaatgaagttcagtcagtaatgctatcttagg tcatgttgagttacatgttctgaggaatgttatgatgatgtatatatata tagtggcatcagataccactgtatgaccatgatacttcaggcctctagca gaaaatatgtcagtgatccctgaagactcttctgcccaaattatgacctt cattaactgccaatggaattactactgatgactgttatctattcctctgt ctaaaatcccagaagtgtcttgccattcataagcaatttgatgtaacaat gcacctggcaactggaaaagagatttgtttatatgaaaccctctgaaagt atttttatgtcccttgtacttactggcaatggacactatgttatatcaga gatccctgctgccatagacagattaggcgtgttttctactcccaatttgg acatattgatgacatctgtgatcctgactaccaaggaaaattaattgaca ttactgattcatgctgacactggtaactactttgacacccatagtctggt tggtcattgaaagcctctgatgtctatgattaatcaccataaaatctgtt ggaagtccatgggagatgcttgctaagttcataatggacttagtactgtt actgttactggag	gaattccttgggatatgtggagaaaagattgcaggaataagagggatcaa ggataccaggaaatcacagtctacagagtcaactcatcaaggctcttagg tgttcattaatatggaagcaacaaccacagagcccctgtgggtctgtact aggccctctacattcatgatatagttgtgaagcttggggtttgtgttctc ctcctaccagtgggaatggggttgtctaagactcttttgcctgtttgtgg aaccattttcctactagtggattactacatactgtcttgttattaaagta tatgtttgggtttgttgcatcttgttatgttccaaaattcagtttgagta ttttactgagtaattttgcatcaatgttcataagagaaataagtctgaag ttctagttctctgttgagtctttatatgatttaggtgttactatgaactg tggtagaactatgacaccacagggtctctgtcgagtcagagaatgagttt ggcagtgttccttatgtttccattttctgaaagaattcaacatatattga gttagttctttgaaactctggtagaattctgtgttaaattgaattgacca ttgactttttagttatttatttgtttgggagatttttaatgcctgcttct atttctttagtgttactgggccgtgtaaagtgtttatgtgtaattgattt aacattcataattggtatcttctagaaaactcttttttcgttaagatttt ccaattttgcagagtacaggattttttttttctttttagatattttcttt atttacatttcaaatgctatcctgaaagttccctataccctccccctgcc ctgctcccctacccacccactccctcttcttggccctggtgtcccctgta ctggggcatataaagtgtataagaccaaggggtcttatgcatagtgtctg aatttggtggcagatatgagatgaatgcctgggagggtaatcttcg
quality values	Open. Hide. 61 47 35 38 61 61 38 22 61 61 61 61 55 25 30 61 61 61 61 55 61 61 36 61 61 61 35 18 15 19 20 17 10 19 30 26 26 44 59 59 61 61 61 61 61 61 61 59 59 61 61 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 59 59 43 61 59 44 44 35 43 36 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 61 61 61 61 59 55 44 59 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 59 61 59 61 61 59 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 59 59 59 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 55 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 59 59 55 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 55 61 61 61 61 55 55 61 61 61 61 61 61 61 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 47 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 47 61 61 53 47 61 53 61 61 61 61 61 61 61 61 39 61 61 53 61 53 61 61 61 61 61 61 61 61 61 53 61 61 52 53 61 53 52 47 61 45 61 61 47 43 61 61 61 53 61 52 61 61 39 53 50 61 61 42 35 52 61 53 61 61 42 43 61 27 53 53 53 61 61 53 61 53 35 61 61 61 53 34 53 41 47 53 52 50 45 53 57 53 47 47 47 42 53 53 53 57 45 53 38 53 53 53 57 45 53 52 47 47 47 42 47 53 45 38 50 34 46 53 28 47 53 53 43 38 53 53 42 57 53 53 57 38 39 27 57 45 57 53 53 53 45 52 45 52 50 50 53 53 53 50 52 53 50 45 38 41 27 41 40 42 50 39 38 37 32 50 57 50 53 45 53 42 47 40 39 57 57 35 39 38 43 39 23 30 43 53 32 39 41 31 53 45 53 47 23 43 28 50 52 32 30 50 41 39 27 35 23 45 40 57 57 45 37 24 40 36 33 40 40 20 36 50 42 36 37 37 52 37 46 53 40 40 34 37 44 53 38 36 57 53 53 21 53 23 33 17 57 57 31 30 57 39 25 39 20 37 28 36 44 42 28 38 29 47 30 42 34 36 57 53 28 37 24 33 57 57 57 33 30 27 30 41 36 45 43 37 27 44 21 30 22 13 29 25 37 36 53 36 23 33 18 29 37 37 32 14 28 28 29 32 33 38 28 31 28 35 29 31 31 28 8 51 13 19 24 21 51 48 32 34 28 41 39 32 29 16 19 28 16 28 19 29 28 31 17 31 25 19 13 20 24 26 48 23 51 51 33 18 19 28 28 28 28 46 29 12 30 20 51 30 23 14 29 11 19 11 7 10 26 29 30 30 15 31 23 31 33 29 24 33 19 21 33 27 25 30 34 22 28 31 28 20 29 34 26 32 32 25 29 51 46 17 7 6 5 8 33 30 27 29 20 10 15 29 31 30 21 33 27 23 23 23 5 16 31 22 12 13 9 5 5 12 20 33 28 17 39 30 22 21 30 34 22 29 29 19 10 8 16 17 38 38 7 9 17 17 23 20 15 17 11 9 7 20 27 5 8 10 26 28 20 32 38 22 14 11 6 4 7 4 10 18 9 13 9 15 11 19 15 8 6 8 5 6 5 6 10 21 8 31 6 15 30 18 18 30 7 6 4 8 10 19 14 1 4 6 6 5 21 21 16 10 23 22 4 7 3 3 6 7 13 14 9 7 21 9 20 12 5 25 9 9 5 5 14 5 9 9 9 6 5 4 4 19 5 4 3 9 6 8 15 6 12 6 5 4 8 11 6 10 5 26 14 11 7	Open. Hide. 61 47 41 47 61 55 24 15 16 18 12 13 11 21 18 16 32 55 59 59 61 61 61 61 61 61 61 59 38 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 59 52 61 59 37 43 35 30 36 36 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 59 59 59 61 59 59 59 61 61 61 61 61 61 59 59 59 59 61 61 59 55 30 43 59 49 59 59 59 45 59 59 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 59 59 59 59 44 30 55 59 59 59 61 59 52 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 59 61 59 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 52 61 61 47 61 61 55 61 61 61 61 61 61 61 61 61 61 61 55 61 61 55 61 61 61 61 61 55 55 55 55 50 61 61 61 61 61 61 61 61 61 61 61 61 41 38 61 55 50 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 47 61 61 55 61 61 39 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 43 61 61 61 53 61 61 61 61 61 61 61 61 61 61 61 37 61 47 43 43 50 61 61 39 53 53 53 61 43 40 61 61 61 61 43 61 45 61 27 53 61 61 47 47 61 61 61 43 61 61 61 52 61 61 45 50 45 61 61 61 50 47 61 45 47 47 61 47 47 52 50 53 53 61 61 61 43 61 53 52 53 38 45 53 47 50 53 53 38 53 53 47 47 53 52 39 33 48 35 36 53 53 40 33 46 50 43 53 43 30 19 18 31 30 50 52 41 40 30 40 43 34 33 53 43 43 53 53 45 50 30 53 53 47 53 42 53 47 42 57 53 50 42 47 42 38 42 50 21 53 42 52 14 57 50 52 37 25 10 30 47 57 53 30 23 30 41 27 53 24 29 42 45 30 34 53 47 25 57 57 57 57 57 57 57 57 50 41 28 57 53 53 36 47 30 41 15 40 33 50 57 32 41 37 53 36 42 50 53 39 24 37 21 40 53 52 40 38 33 17 31 35 31 40 38 38 38 28 36 38 30 28 33 17 16 25 32 53 41 42 50 26 40 52 16 23 13 10 13 14 18 27 19 31 22 31 24 35 48 30 40 34 47 39 37 29 23 31 40 35 32 20 35 35 23 24 40 25 44 34 17 32 26 21 17 11 20 37 31 26 40 33 29 18 16 13 19 10 9 57 57 33 34 28 7 20 28 31 40 19 29 33 23 30 25 20 17 8 45 30 29 24 30 25 30 20 34 31 9 40 13 32 38 20 34 51 45 23 7 33 22 20 15 8 10 21 18 11 13 11 16 23 24 18 18 19 31 21 19 29 19 26 29 25 26 36 20 20 9 14 32 11 11 15 8 10 7 10 12 10 11 12 15 15 13 5 8 30 18 5 16 30 25 6 17 25 5 14 15 11 13 7

Alignment Information

BAC End 1

BAC End 2

seq1: chrX_25702007_25703179
seq2: B6Ng01-040F11.b_49_1211 (reverse)

seq1  CTCCAGTAACAGCTAACAGTACTTAGCTCATTATGAACTTAGGCAGCAAT  50
      |||||||||||| |||||||||| ||  ||||||||||||||  |||   
seq2  CTCCAGTAACAG-TAACAGTACTAAGTCCATTATGAACTTAGCAAGC---  46

seq1  ACTTACCATGGACTTTACAACAGATTCTTATGGTTGATTTATCATAGACA  100
      |  | |||||||| || ||||||||| |||||| ||||| ||||||||||
seq2  ATCTCCCATGGAC-TTCCAACAGATT-TTATGG-TGATTAATCATAGACA  93

seq1  TCATGTAGCTTTTCAATGACCACACAGACTATGGGTGTCAAAGTAGTTAC  150
      |||   ||  ||||||||||||  ||||||||||||||||||||||||||
seq2  TCA--GAGGCTTTCAATGACCAACCAGACTATGGGTGTCAAAGTAGTTAC  141

seq1  CAGTGTCAGCATGAATCAGTAATGTCAATATATTTTCCTTGGTAGTCAGG  200
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  CAGTGTCAGCATGAATCAGTAATGTCAATTAATTTTCCTTGGTAGTCAGG  191

seq1  ATCACAGATGTCATCAATATTGTCCAAATTGGGAGTAGAAAACACGCCTA  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCACAGATGTCATCAATA-TGTCCAAATTGGGAGTAGAAAACACGCCTA  240

seq1  ATCTGTCTATGGCAGCAGGGATCTCTGATATAACATAGTGTCCATTGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTATGGCAGCAGGGATCTCTGATATAACATAGTGTCCATTGCCA  290

seq1  GTAAGTACAAGGGACATAAAAATACTTTCAGAGGGTTTCATATAAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTACAAGGGACATAAAAATACTTTCAGAGGGTTTCATATAAACAAA  340

seq1  TCTCTTTTCCAGTTGCCAGGTGCATTGTTACATCAAATTGCTTATGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCCAGTTGCCAGGTGCATTGTTACATCAAATTGCTTATGAATG  390

seq1  GCAAGACACTTCTGGGATTTTAGACAGAGGAATAGATAACAGTCATCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACACTTCTGGGATTTTAGACAGAGGAATAGATAACAGTCATCAGT  440

seq1  AGTAATTCCATTGGCAGTTAATGAAGGTCATAATTTGGGCAGAAGAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTCCATTGGCAGTTAATGAAGGTCATAATTTGGGCAGAAGAGTCT  490

seq1  TCAGGGATCACTGACATATTTTCTGCTAGAGGCCTGAAGTATCATGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGATCACTGACATATTTTCTGCTAGAGGCCTGAAGTATCATGGTCA  540

seq1  TACAGTGGTATCTGATGCCACTATATATATATACATCATCATAACATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGGTATCTGATGCCACTATATATATATACATCATCATAACATTCC  590

seq1  TCAGAACATGTAACTCAACATGACCTAAGATAGCATTACTGACTGAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACATGTAACTCAACATGACCTAAGATAGCATTACTGACTGAACTT  640

seq1  CATTGAAGATTCTGACGGTCTCAGGGATTCTTCACATTTACAGTCCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGATTCTGACGGTCTCAGGGATTCTTCACATTTACAGTCCCTTC  690

seq1  AGGAGCAACACATACAATGGATTTCAACATGGATACTAGAGGCAGGATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAACACATACAATGGATTTCAACATGGATACTAGAGGCAGGATGC  740

seq1  ATGATTCACATCATCCACATTTCTGTGGCACCTGTGCATTAGTGAAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCACATCATCCACATTTCTGTGGCACCTGTGCATTAGTGAAGTCA  790

seq1  ACATGGTTCCAGTGTCAGCTAGGATCACTGGCAATAATTTTGCCATTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTCCAGTGTCAGCTAGGATCACTGGCAATAATTTTGCCATTGTC  840

seq1  AACAATATTCTCAGACAATACCATGGGGTCTGTTGCCAGGTATATATTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTCTCAGACAATACCATGGGGTCTGTTGCCAGGTATATATTAG  890

seq1  TGACATCAGCATTGATTTAGGGGGCATAAAAAAATTAGGGTCATAAAACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCAGCATTGATTTAGGGGGCATAAAAAAATTAGGGTCATAAAACG  940

seq1  CTTTTCCAGGAACAAGATAGATTACTGAGATCACTACCTCTTTTGGTGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCAGGAACAAGATAGATTACTGAGATCACTACCTCTTTTGGTGGT  990

seq1  AGTAAGAATATTGTCCATTTCATGCATGATAGCATTTGCTACATGAAAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGAATATTGTCCATTTCATGCATGATAGCATTTGCTACATGAAAGT  1040

seq1  ATCAGGGGCATCAACAAAATTACCTGTGGCAGGTGGGATATGAGGCTTCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGGCATCAACAAAATTACCTGTGGCAGGTGGGATATGAGGCTTCA  1090

seq1  ATCTGATATTCAGTGCTACATAAGAACACTTACCTCAACATGACATCAAG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATATTCAGTGCTACATAAGAACACTTACCTCAACATGACATCAAG  1140

seq1  TGTCAGTATGAATTTTGGAATTC  1173
      |||||||||||||||||||||||
seq2  TGTCAGTATGAATTTTGGAATTC  1163

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information