BAC Information

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BAC

Clone NameB6Ng01-040H03
ChromosomeX (Build37)
Map Location 147,399,170 - 147,543,846
singlet/doubletdoublet
Overlap geneGnl3l, Fgd1, Tsr2
Upstream geneLOC382244, LOC100039669, EG666982, EG624631, EG546387, LOC333588, Tmem29, LOC100040101, Alas2, Apex2, Pfkfb1, Tro, LOC100039716, Maged2, Itih5l, LOC667021
Downstream geneLOC100040221, EG667027, Wnk3, LOC675278, ORF34, LOC623804, LOC100039760, Phf8, LOC385448, LOC237116, Huwe1, LOC675514, Hsd17b10, Ribc1, Smc1a, LOC100040394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040H03.bB6Ng01-040H03.g
ACCDH867410DH867411
length7471,012
definitionDH867410|Mus musculus domesticus DNA, BAC clone: B6Ng01-040H03, 5' end.DH867411|Mus musculus domesticus DNA, BAC clone: B6Ng01-040H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,399,170 - 147,399,916)(147,543,290 - 147,543,846)
sequence
gaattcagagtcacataatcattattaaaattccctcaacatagtattaa
tatgtttcttacagatcagattcagggatatcatctcaagaaagagtcct
gtaagcatagcaatcagaattaactactcaaatagggaaagagccccgta
gacacagggagcaactgaaggaggtgggagtggattcggcctgtttagag
agcagggagaaagctcagtggagtgatagaaaccacatcacacacttctc
tgtgtgaggactgcaacattttaatagagttgggagtcatatacatgttt
taagaaaaggggagagagtattggattctagttgtagtagttttacctct
ctgatcaaatatagtagaaattattttaatcctgacctggggcttctacc
ccaccttgacattgacttcctggatgagagacacactcatagccttaata
ttagctgggcagctgcctatcctttgtgctattagaatctactttcctat
caataatcccaagttattacttactagttactatgtttcatctgggctgc
tcttatctccaattgggcagcccttagggccacaatctcttgactttatc
ccatggcagctttgaccaaagaaatagataagaatgtggtacaaaatggt
aatcattggtcagtttggtttttttgtaaagccagcacatagctgaatgc
ccccaagatcaatcacaggtagagaggaggtgggagatgagggagga
gaattcatcacaacatgagaaactgtattaaggggtcacagcattaggaa
ggttaagggccattgttctatggcttctgcttcgggttatgccttcaggt
tcttgccttgagttcctgtcctgtcttcaagatggtctgtgacatggaac
tgtaaaccaaataaatcctttctttcctaagttgcttttggtcgtggcct
tcatcacaacaatagaaaaacaaatgtggactcggtgactttatagtttt
gagatctttggaactggtttgtgaatgaactatgaaagacttggggttgg
ggtctagaaaagccagaaagcactataaaagcagggtcaatgggacattc
ttggggacgtttgaaaacaggagtgctaagaaaaagacagtacaggccca
gctcacgatgtttcaaaaggaaataaaaaccctaccacggaccaaggtag
agagcatttgagttgtatttgagcaaagaatctggtttcctactccatgc
atcccaagaagtggagttaagttgagttcaaaagtaatagagtaatttgt
ctagtggaagagacctagataggagtgtttgagctgtgacattgtcactg
cttagccaacacttcagtcagagcgacgggtggagcaaaaagataggaaa
atgtgatgcttggtgaaaagagaacatttaaagctgcagacaagatgggt
cctgagaaagtaccttgtaactgctaaagaggttagcaaatggtcagccc
tgaaaatatacaagtaacattatatggactgaataggttttttaaatgta
tattacatacacacacacaaaaatctatgtatgcaataataattagtgaa
aaaagaggccatgaatttgaagagtagggagggtcatatgggagaatttg
gcaggaggaaagagaaagaataaacgttgtaactatactaaatctcaaaa
aaaaatttaaatttaaaacaaaaaactgaagaaaagaatgagatttgaga
gagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_147399170_147399916
seq2: B6Ng01-040H03.b_42_788

seq1  GAATTCAGAGTCACATAATCATTATTAAAATTCCCTCAACATAGTATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGTCACATAATCATTATTAAAATTCCCTCAACATAGTATTAA  50

seq1  TATGTTTCTTACAGATCAGATTCAGGGATATCATCTCAAGAAAGAGTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTCTTACAGATCAGATTCAGGGATATCATCTCAAGAAAGAGTCCT  100

seq1  GTAAGCATAGCAATCAGAATTAACTACTCAAATAGGGAAAGAGCCCCGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATAGCAATCAGAATTAACTACTCAAATAGGGAAAGAGCCCCGTA  150

seq1  GACACAGGGAGCAACTGAAGGAGGTGGGAGTGGATTCGGCCTGTTTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGGGAGCAACTGAAGGAGGTGGGAGTGGATTCGGCCTGTTTAGAG  200

seq1  AGCAGGGAGAAAGCTCAGTGGAGTGATAGAAACCACATCACACACTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAGAAAGCTCAGTGGAGTGATAGAAACCACATCACACACTTCTC  250

seq1  TGTGTGAGGACTGCAACATTTTAATAGAGTTGGGAGTCATATACATGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGAGGACTGCAACATTTTAATAGAGTTGGGAGTCATATACATGTTT  300

seq1  TAAGAAAAGGGGAGAGAGTATTGGATTCTAGTTGTAGTAGTTTTACCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAAAGGGGAGAGAGTATTGGATTCTAGTTGTAGTAGTTTTACCTCT  350

seq1  CTGATCAAATATAGTAGAAATTATTTTAATCCTGACCTGGGGCTTCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCAAATATAGTAGAAATTATTTTAATCCTGACCTGGGGCTTCTACC  400

seq1  CCACCTTGACATTGACTTCCTGGATGAGAGACACACTCATAGCCTTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTGACATTGACTTCCTGGATGAGAGACACACTCATAGCCTTAATA  450

seq1  TTAGCTGGGCAGCTGCCTATCCTTTGTGCTATTAGAATCTACTTTCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGGGCAGCTGCCTATCCTTTGTGCTATTAGAATCTACTTTCCTAT  500

seq1  CAATAATCCCAAGTTATTACTTACTAGTTACTATGTTTCATCTGGGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATCCCAAGTTATTACTTACTAGTTACTATGTTTCATCTGGGCTGC  550

seq1  TCTTATCTCCAATTGGGCAGCCCTTAGGGCCACAATCTCTTGACTTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTCCAATTGGGCAGCCCTTAGGGCCACAATCTCTTGACTTTATC  600

seq1  CCATGGCAGCTTTGACCAAAGAAATAGATAAGAATGTGGTACAAAATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCAGCTTTGACCAAAGAAATAGATAAGAATGTGGTACAAAATGGT  650

seq1  AATCATTGGTCAGTTTGGTTTTTTTGTAAAGCCAGCACATAGCTGAATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTGGTCAGTTTGGTTTTTTTGTAAAGCCAGCACATAGCTGAATGC  700

seq1  CCCCAAGATCAATCACAGGTAGAGAGGAGGTGGGAGATGAGGGAGGA  747
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGATCAATCACAGGTAGAGAGGAGGTGGGAGATGAGGGAGGA  747

seq1: chrX_147543290_147543846
seq2: B6Ng01-040H03.g_528_1079 (reverse)

seq1  TCTCTCTCTCTCTCTCAAATTCTCATTCTTTTTCTTCAGTTTTTTTGTTT  50
      ||||||||||||||||||| |||||||| |||||||||| ||||||||||
seq2  TCTCTCTCTCTCTCTCAAA-TCTCATTC-TTTTCTTCAG-TTTTTTGTTT  47

seq1  TAAATTTAAATTTTTTTTTTGAGATTTTAGTATAGTTACAACGTTTATTC  100
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  TAAATTTAAA-TTTTTTTTTGAGA-TTTAGTATAGTTACAACGTTTATTC  95

seq1  TTTCTCTTTCCTCCTGCCAAATTCTCCCATATGACCCTCCCTACTCTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCCTCCTGCCAAATTCTCCCATATGACCCTCCCTACTCTTCA  145

seq1  AATTCATGGCCTCTTTTTTCACTAATTATTATTGCATACATAGATTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATGGCCTCTTTTTTCACTAATTATTATTGCATACATAGATTTTTG  195

seq1  TGTGTGTGTATGTAATATACATTTAAAAAACCTATTCAGTCCATATAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGTAATATACATTTAAAAAACCTATTCAGTCCATATAATG  245

seq1  TTACTTGTATATTTTCAGGGCTGACCATTTGCTAACCTCTTTAGCAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGTATATTTTCAGGGCTGACCATTTGCTAACCTCTTTAGCAGTTA  295

seq1  CAAGGTACTTTCTCAGGACCCATCTTGTCTGCAGCTTTAAATGTTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTACTTTCTCAGGACCCATCTTGTCTGCAGCTTTAAATGTTCTCTT  345

seq1  TTCACCAAGCATCACATTTTCCTATCTTTTTGCTCCACCCGTCGCTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCAAGCATCACATTTTCCTATCTTTTTGCTCCACCCGTCGCTCTGA  395

seq1  CTGAAGTGTTGGCTAAGCAGTGACAATGTCACAGCTCAAACACTCCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTGTTGGCTAAGCAGTGACAATGTCACAGCTCAAACACTCCTATC  445

seq1  TAGGTCTCTTCCACTAGACAAATTACTCTATTACTTTTGAACTCAACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTCTTCCACTAGACAAATTACTCTATTACTTTTGAACTCAACTTA  495

seq1  ACTCCACTTCTTGGGATGCATGGAGTAGGAAACCAGATTCTTTGCTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACTTCTTGGGATGCATGGAGTAGGAAACCAGATTCTTTGCTCAAA  545

seq1  TACAACT  557
      |||||||
seq2  TACAACT  552