BAC Information

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BAC

Clone NameB6Ng01-041I08
ChromosomeX (Build37)
Map Location 37,179,044 - 37,297,198
singlet/doubletdoublet
Overlap genenone
Upstream gene6030498E09Rik, LOC547171, LOC670539, LOC100039700, 1700085A12Rik, LOC100039715
Downstream geneEG636756, EG636766, EG245391, LOC100039769
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041I08.bB6Ng01-041I08.g
ACCDH868164DH868165
length1,046721
definitionDH868164|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I08, 5' end.DH868165|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,179,044 - 37,180,090)(37,296,479 - 37,297,198)
sequence
gaattctctgcaacatctttcttccagcactttgtgacggaaatcatact
tctttttgctaactgaaatgattaatatttatgaaaaattttatatatac
caggtaccatagtgctaggaatctatcagtgaacaagacagaaaatattt
ccttatgatgtctcatagagtaaaacagataataacttacaaaaagagtg
agaaaagactgaataaaggtagaagaaagatgagggataagaacaaggat
cctaaatgtaaaaaggagagttgtcaatatttgttaacatttataataaa
gacagctatgaaaatggagtttttagatgtttgaaattttcttgaaagca
taaatctaattcatttacaatgtttggtttttaggtgaaacaactgtcta
tgtccatgaatcataaggtctttattttatggtgcacattgtcagtaaat
agacaaatctagaggacagaccatactaacaagttggtggaggtaaaaca
agtgcaattgtgagaaatggtgccaaacattgctcagttcactttgccca
ctcttcaggattctctgcccagagtatggtgccatcttcattcaggttag
ggcttcccactaattatgctaattagaattaagcacagacaaacataatc
tagaaagtacttttctgaggttttctttataggtcattttaggtcatgtc
aggttgacagttaaaactaacaaccatagtcatagactgttttctggagc
agctgtcttttggaaccagatgttcatgctaggaggaagctaaggaatct
gtgaagactctcccatggaaataaaactgaaatatctagccttcagttac
tgcagacttcctatggaatgctcagctgcaatggttagttataaatctat
gccatgatagaaaagtgaatctccctaccaccatttgaaccgccctatgt
gatcctacttaaacaaggttgggtttcattacaggtgtctcatctactat
tacacaatgcatgccggcattgctgggttggtagctatgtattaca
gaattcaacactgaacagactcagcaggttgtatttacaagcaacaatgg
ctaaaaaaaaagaggagaatgtgaatatgggatattgggctcagatctag
aagggatagaaaaaaggagagaagtgaggaattatgtacataaatttaat
tcagttgtgtgccttctgagatacctgtgagtctctagtagagagttcta
aacactaggtcacataaatgatccagcttaaactcagtgagtcttaaaac
aaaacaaaacaaaacaaaacataacataacaaaacaaaacaacaactaca
aaaagctatggatattgaaaggaatatgatggggtatgtactggaggtaa
gagagagcttagttagagagggcttataataatcagaattcatgctatac
atacatgtaattgtcaaagaacaaatccaataatagttaaaaaatattac
cttaaaaagccattaacaagtgttctgtaggcatagtccttcaaaagagc
taaaagcctttctcctatgattagagacttaggtaccattaaaatttaca
tttgcttagaatatataagctaaatttgaatcttctccctgttaaagata
aaaataattgtgccattgaagaaactcatattgttttagtaggaaaaaaa
aaactttttgagcaggagagctacttactggatggaagaggtggtagtat
agggctagttttggggatatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_37179044_37180090
seq2: B6Ng01-041I08.b_50_1095

seq1  GAATTCTCTGCAACATCTTTCTTCCAGCACTTTGTGACGGAAATCATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCAACATCTTTCTTCCAGCACTTTGTGACGGAAATCATACT  50

seq1  TCTTTTTGCTAACTGAAATGATTAATATTTATGAAAAATTTTATATATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGCTAACTGAAATGATTAATATTTATGAAAAATTTTATATATAC  100

seq1  CAGGTACCATAGTGCTAGGAATCTATCAGTGAACAAGACAGAAAATATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTACCATAGTGCTAGGAATCTATCAGTGAACAAGACAGAAAATATTT  150

seq1  CCTTATGATGTCTCATAGAGTAAAACAGATAATAACTTACAAAAAGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGATGTCTCATAGAGTAAAACAGATAATAACTTACAAAAAGAGTG  200

seq1  AGAAAAGACTGAATAAAGGTAGAAGAAAGATGAGGGATAAGAACAAGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGACTGAATAAAGGTAGAAGAAAGATGAGGGATAAGAACAAGGAT  250

seq1  CCTAAATGTAAAAAGGAGAGTTGTCAATATTTGTTAACATTTATAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATGTAAAAAGGAGAGTTGTCAATATTTGTTAACATTTATAATAAA  300

seq1  GACAGCTATGAAAATGGAGTTTTTAGATGTTTGAAATTTTCTTGAAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTATGAAAATGGAGTTTTTAGATGTTTGAAATTTTCTTGAAAGCA  350

seq1  TAAATCTAATTCATTTACAATGTTTGGTTTTTAGGTGAAACAACTGTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTAATTCATTTACAATGTTTGGTTTTTAGGTGAAACAACTGTCTA  400

seq1  TGTCCATGAATCATAAGGTCTTTATTTTATGGTGCACATTGTCAGTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGAATCATAAGGTCTTTATTTTATGGTGCACATTGTCAGTAAAT  450

seq1  AGACAAATCTAGAGGACAGACCATACTAACAAGTTGGTGGAGGTAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATCTAGAGGACAGACCATACTAACAAGTTGGTGGAGGTAAAACA  500

seq1  AGTGCAATTGTGAGAAATGGTGCCAAACATTGCTCAGTTCACTTTGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAATTGTGAGAAATGGTGCCAAACATTGCTCAGTTCACTTTGCCCA  550

seq1  CTCTTCAGGATTCTCTGCCCAGAGTATGGTGCCATCTTCATTCAGGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGGATTCTCTGCCCAGAGTATGGTGCCATCTTCATTCAGGTTAG  600

seq1  GGCTTCCCACTAATTATGCTAATTAGAATTAAGCACAGACAAACATAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCACTAATTATGCTAATTAGAATTAAGCACAGACAAACATAATC  650

seq1  TAGAAAGTACTTTTCTGAGGTTTTCTTTATAGGTCATTTTAGGTCATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTACTTTTCTGAGGTTTTCTTTATAGGTCATTTTAGGTCATGTC  700

seq1  AGGTTGACAGTTAAAACTAACAACCATAGTCATAGACTGTTTTCTGGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGACAGTTAAAACTAACAACCATAGTCATAGACTGTTTTCTGGAGC  750

seq1  AGCTGTCTTTTGGAACCAGATGTTCATGCTAGGAGGAAGCTAAGGAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCTTTTGGAACCAGATGTTCATGCTAGGAGGAAGCTAAGGAATCT  800

seq1  GTGAAGACTCTCCCATGGAAAT-AAACTGAAATATCTAGCCTTCAGTTAC  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTGAAGACTCTCCCATGGAAATAAAACTGAAATATCTAGCCTTCAGTTAC  850

seq1  TGCAGACTTCCTATGGAATGCTCAGCTGCAATGGTTAGTTATAAATCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTTCCTATGGAATGCTCAGCTGCAATGGTTAGTTATAAATCTAT  900

seq1  GCCATGATAGAAAAGTGAATCTCCCTACCACCATTTGAACCGCCCTATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATAGAAAAGTGAATCTCCCTACCACCATTTGAACCGCCCTATGT  950

seq1  GATCCTACTTAAAACAGGTT-GGCTTCATTACAGGTTGTCTCATCTACTA  998
      |||||||||||||  ||||| || ||||||||||| ||||||||||||||
seq2  GATCCTACTTAAACAAGGTTGGGTTTCATTACAGG-TGTCTCATCTACTA  999

seq1  TTACAACAATGCATGCCGGCATTGCTGGTTTGTTAGCTAATGTATTACA  1047
      |||| ||||||||||||||||||||||| ||| ||||| ||||||||||
seq2  TTAC-ACAATGCATGCCGGCATTGCTGGGTTGGTAGCT-ATGTATTACA  1046

seq1: chrX_37296479_37297198
seq2: B6Ng01-041I08.g_68_788 (reverse)

seq1  GCTATCCCCAAAACTAGCCCTATACTACCACCTCTTCCATCCAGTAAGTA  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCCCAAAACTAGCCCTATACTACCACCTCTTCCATCCAGTAAGTA  50

seq1  GCTCTCCTGCTC-AAAAGTTTTTTTTTTCCTACTAAAACAATATGAGTTT  99
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTGCTCAAAAAGTTTTTTTTTTCCTACTAAAACAATATGAGTTT  100

seq1  CTTCAATGGCACAATTATTTTTATCTTTAACAGGGAGAAGATTCAAATTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATGGCACAATTATTTTTATCTTTAACAGGGAGAAGATTCAAATTT  150

seq1  AGCTTATATATTCTAAGCAAATGTAAATTTTAATGGTACCTAAGTCTCTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATATATTCTAAGCAAATGTAAATTTTAATGGTACCTAAGTCTCTA  200

seq1  ATCATAGGAGAAAGGCTTTTAGCTCTTTTGAAGGACTATGCCTACAGAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGGAGAAAGGCTTTTAGCTCTTTTGAAGGACTATGCCTACAGAAC  250

seq1  ACTTGTTAATGGCTTTTTAAGGTAATATTTTTTAACTATTATTGGATTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTAATGGCTTTTTAAGGTAATATTTTTTAACTATTATTGGATTTG  300

seq1  TTCTTTGACAATTACATGTATGTATAGCATGAATTCTGATTATTATAAGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGACAATTACATGTATGTATAGCATGAATTCTGATTATTATAAGC  350

seq1  CCTCTCTAACTAAGCTCTCTCTTACCTCCAGTACATACCCCATCATATTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTAACTAAGCTCTCTCTTACCTCCAGTACATACCCCATCATATTC  400

seq1  CTTTCAATATCCATAGCTTTTTGTAGTTGTTGTTTTGTTTTGTTATGTTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATATCCATAGCTTTTTGTAGTTGTTGTTTTGTTTTGTTATGTTA  450

seq1  TGTTTTGTTTTGTTTTGTTTTGTTTTAAGACTCACTGAGTTTAAGCTGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTTGTTTTAAGACTCACTGAGTTTAAGCTGGA  500

seq1  TCATTTATGTGACCTAGTGTTTAGAACTCTCTACTAGAGACTCACAGGTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATGTGACCTAGTGTTTAGAACTCTCTACTAGAGACTCACAGGTA  550

seq1  TCTCAGAAGGCACACAACTGAATTAAATTTATGTACATAATTCCTCACTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAAGGCACACAACTGAATTAAATTTATGTACATAATTCCTCACTT  600

seq1  CTCTCCTTTTTTCTATCCCTTCTAGATCTGAGCCCAATATCCCATATTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTTTTTTCTATCCCTTCTAGATCTGAGCCCAATATCCCATATTCA  650

seq1  CATTCTCCTCTTTTTTTTTAGCCATTGTTGCTTGTAAATACAACCTGCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCTCTTTTTTTTTAGCCATTGTTGCTTGTAAATACAACCTGCTG  700

seq1  AGTCTGTTCAGTGTTGAATTC  720
      |||||||||||||||||||||
seq2  AGTCTGTTCAGTGTTGAATTC  721