BAC Information

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BAC

Clone NameB6Ng01-041I18
Chromosome5 (Build37)X (Build37)
Map Location 47,363,097 - 47,363,65322,514,666 - 22,515,437
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041I18.bB6Ng01-041I18.g
ACCDH868180DH868181
length4091,044
definitionDH868180|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I18, 5' end.DH868181|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,363,097 - 47,363,653)(22,514,666 - 22,515,437)
sequence
ataacagttatgaggctactgatggcacaattctttaaaataatacttct
caggatttagtgtgcagaaggatatcctgggaatcttataaaattacata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatatataccccccccccccccccccccccat
ctatatatcgcgcgcgcgcgcgcgcgcgcgctatatatatatatgtgtgt
acgcgtgtgtgtgtgtgtgtatgtatgtatatctatctatatatatatat
atatatatatatatatatatgtatatatatgtatcccatatacatgtaca
tatggctgt
gaattcagtaagaatgttgcctattcagtgacattcagaattgcctctgg
tattacactatcactttgaataaaagctaaatcactgccctacacaggaa
tttagggcatcatctaggaagaaggaagtttgagacctaaggaggaacca
gagtagatacttagaactatagacagctgagttatacccatacacacgta
tttacaatggcctaggggggaggcggactatacaatagactaaaatagga
actatggtaagggcacgaagcccttgaccctggcttctatgattaagtgg
atcttaggtggagctctttttgatcccagttgttaacaatgaattctatc
ccaggtggttcctgttagaccttctgtgtttgtattcctgttttgtgtaa
gaatccagtaacctccttgtaccttgctggtgtgtcacccagcttcccta
ttttcttctgtataaaaagtttgatgctcgattttacaaattacattcag
attctacacaacctttcctgtgtgcatctgtctgtcattccatccaatgc
tttgcccacctgtgactagagacccgttcaacgcagacaaagggatccag
agggtctgtggcatgtggctaacaactggaaaggatgtttctcatgccca
gtattgggattgttgttagctggtctatgagtcttgggggagagcactgg
cagcctcagtgaaataactacatttacacaatgtatgtataagtatatac
ttacatgttacagtgtttccttctccatatgcctttcatcagttagaata
gtctcttttctggtcttgccttttttcaatcattcttatttctttatctt
tttccattaattatttccttaaatcatttttcttccaatacttccccaaa
tctatccctctgtccaggcacagcaaatatttgctgaactaagcttttac
catttcgacaccagtcatcttacctccttaacttcataacacgtgtgaaa
tccatattctttgcttaatggcgattaaaacaggttctaggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_47363097_47363653
seq2: B6Ng01-041I18.b_146_459 (reverse)

seq1  ACAGACATATGTACACATATAT-ACATATATATATATAATATAAATATCA  49
      |||| ||||||||||  |||||   ||| |||||||||          ||
seq2  ACAGCCATATGTACATGTATATGGGATACATATATATA----------CA  40

seq1  ATTTATATATATTATATATATTTGTATATATGTATTTATACACAACTATA  99
         |||||||| ||||||||| | ||||||| |||  |||       |||
seq2  ---TATATATA-TATATATATATATATATATATATAGATA------GATA  80

seq1  TACATATATAAATATATAAAATACACACACATATGTATATATAAATAAAT  149
      |||||| |||        | | |||||||||   ||| | | | ||| ||
seq2  TACATACATA-------CACACACACACACACGCGTACACACATATATAT  123

seq1  ATAT------------------------ATAAATACAT------------  163
      ||||                        ||| ||| ||            
seq2  ATATAGCGCGCGCGCGCGCGCGCGCGCGATATATAGATGGGGGGGGGGGG  173

seq1  -------GAATATACATATATGTATGTATATATGTGTATGTATATTTAAT  206
             |  |||| |||||| ||| ||||||| | ||| |||||   ||
seq2  GGGGGGGGGGTATATATATATATATATATATATATATATATATAT---AT  220

seq1  ATGTGTATATATGTATATATGTGCATATATACATATAAGTATATATATGT  256
      || | ||||||| ||||||| |  ||||||| |||||  ||||||||| |
seq2  ATATATATATATATATATATAT--ATATATATATATATATATATATATAT  268

seq1  ATATATGTACATATAAATATATAAATACACATATATTTATATATGTATCC  306
      |||||| || ||||| ||||||| ||| | |||||| |||||||||    
seq2  ATATATATATATATATATATATATATATATATATATATATATATGT----  314

seq1  ATACACACACACACACACACACACACACACACACACACACACATATATAT  356
                                                        
seq2  --------------------------------------------------  314

seq1  ATATGAGAAGGACTCAGACACTGGAAGAAGTCTTGGACCACTGAGAATAC  406
                                                        
seq2  --------------------------------------------------  314

seq1  ATTTCAAGAGAGTAGGGGACCCTCTTTTCCTCATTATTTGTTACATGCAG  456
                                                        
seq2  --------------------------------------------------  314

seq1  GATTTATGGAGTATGGGGTATATGAATATATATATATGTATGTGTATATA  506
                                                        
seq2  --------------------------------------------------  314

seq1  TATGTATGTATATATATGTGTATGTGTGTGTGTATATATATATATATATG  556
                                                        
seq2  --------------------------------------------------  314

seq1  T  557
       
seq2  -  314

seq1: chrX_22514666_22515437
seq2: B6Ng01-041I18.g_356_1112

seq1  TATGATTAAGTGGATCTTAGGTGGAGCTCTTTTTGATCCCAGTTGTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTAAGTGGATCTTAGGTGGAGCTCTTTTTGATCCCAGTTGTTAAC  50

seq1  AATGAATTCTATCCCAGGTGGTTCCTGTTAGACCTTCTGTGTTTGTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTCTATCCCAGGTGGTTCCTGTTAGACCTTCTGTGTTTGTATTC  100

seq1  CTGTTTTGTGTAAGAATCCAGTAACCTCCTTGTACCTTGCTGGTGTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTGTAAGAATCCAGTAACCTCCTTGTACCTTGCTGGTGTGTCA  150

seq1  CCCAGCTTCCCTATTTTCTTCTGTATAAAAAGTTTGATGCTCGATTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTTCCCTATTTTCTTCTGTATAAAAAGTTTGATGCTCGATTTTAC  200

seq1  AAATTACATTCAGATTCTACACAACCTTTCCTGTGTGCATCTGTCTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACATTCAGATTCTACACAACCTTTCCTGTGTGCATCTGTCTGTCA  250

seq1  TTCCATCCAATGCTTTGCCCACCTGTGACTAGAGACCCGTTCAACGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCCAATGCTTTGCCCACCTGTGACTAGAGACCCGTTCAACGCAGA  300

seq1  CAAAGGGATCCAGAGGGTCTGTGGCATGTGGCTAACAACTGGAAAGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGATCCAGAGGGTCTGTGGCATGTGGCTAACAACTGGAAAGGATG  350

seq1  TTTCTCATGCCCAGTATTGGGATTGTTGTTAGCTGGTCTATGAGTCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATGCCCAGTATTGGGATTGTTGTTAGCTGGTCTATGAGTCTTGG  400

seq1  GGGAGAGCACTGGCAGCCTCAGTGAAATAACTACATTTACACAATGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGCACTGGCAGCCTCAGTGAAATAACTACATTTACACAATGTATG  450

seq1  TATAAGTATATACTTACATGTTACAGTGTTTCCTTCTCCATATGCCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGTATATACTTACATGTTACAGTGTTTCCTTCTCCATATGCCTTTC  500

seq1  ATCAGTTAGAATAGTCTCTTTTCTGGTCTTGCCTTTTTTCAATCATTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTAGAATAGTCTCTTTTCTGGTCTTGCCTTTTTTCAATCATTCTT  550

seq1  ATTTCTTTATCTTTTTCCATTAATTATTTCCTTAAATCATTTTTCTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTATCTTTTTCCATTAATTATTTCCTTAAATCATTTTTCTTCCA  600

seq1  ATACTTCCCCAAATCTATCCCTCTGTCCAGGCACAGCAAATATTTGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCCCCAAATCTATCCCTCTGTCCAGGCACAGCAAATATTTGCTGA  650

seq1  ACTAAGCTTTTACCAATTTCGTACAACCAGTCATCTTTACCTCCCTTAAA  700
      |||||||||||||| |||||| || |||||||||| ||||||||  | ||
seq2  ACTAAGCTTTTACC-ATTTCG-AC-ACCAGTCATC-TTACCTCC--TTAA  694

seq1  CTTCAATAACACCGTGTGAAAAATCCAATAATTCTTTTGCTTAATTGCTG  750
      |||| |||||| ||||||  |||||||   |||| |||||||||| || |
seq2  CTTC-ATAACA-CGTGTG--AAATCCA--TATTC-TTTGCTTAATGGC-G  736

seq1  ATTAAAAACATGTTCTAAGTTT  772
      ||| |||||| |||||| ||||
seq2  ATT-AAAACAGGTTCTAGGTTT  757