BAC Information

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BAC

Clone NameB6Ng01-042P16
ChromosomeX (Build37)
Map Location 75,015,810 - 75,017,029
singlet/doubletsinglet
Overlap genePrkx
Upstream geneLOC385474, EG436208, LOC546331, LOC100041212, Tbl1x, EG628893, LOC667606
Downstream genePbsn, OTTMUSG00000017866, LOC100042001, 5430402E10Rik, LOC628976, Obp1a, EG546335, EG628991, LOC236874, EG667658, 4930480E11Rik, EG667672, Prrg1, LOC667679, LOC667684, 4921509A18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042P16.bB6Ng01-042P16.g
ACCDH869182DH869183
length1,2061,210
definitionDH869182|Mus musculus domesticus DNA, BAC clone: B6Ng01-042P16, 5' end.DH869183|Mus musculus domesticus DNA, BAC clone: B6Ng01-042P16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttatgatatgtacaatttcagtaaaaagaaaaaaatgaattaa
agttaacttttgtggtggcacagagattcattcacaaagattctcctagc
tcagtaaataaaccaatgccattaaaacacaccatatgtgtggaagtatc
tcaaaaaattaataaaaaatactatatttacacatggaaatgatcatgaa
gaagagcctagggtccattgtctccttcaaggtcatacttcccataaact
aacttttcctctaagcccttcttaacagttcaaagaaaagttaaaaattt
agacaagttaaaaagttaataaagaagctgtgtatggtggtgcatacctt
ttatctcagcactcaggggtcagatatctatgagttcaagactagccagg
ctagctagggctataaattgagaccctgtttcaataagttagttaataac
taataaatgaaaaaaaaaccagatagttggatagagggaaggatggatgg
atggacaaactgatcgcttacacaacttgtcccaaatctgcgttaatttc
aacactgtccatctcaaaagaaatgagatatgtagcaggtcttttgaata
ttaaatttcagtaaaatgagaataactgaaacgtttttctttcctggtgg
aaacaaatgactgacagaattgtactgatccagtttgccaggagtgtatg
cttgcagtgtgatttcacacaactttgaaagtagacatgggggcagggca
ggaaaccgggccgggagtgcacttacttagaggtgaaatccaattgtctg
gggaaatctattttgcatgcaaggattttctggtaaatcccaaacgggtt
gtcatcgaaaaatgggggaaacctgtcacagagagaagcatggatattta
gtagagagttaaatacagaattatatctattttggttaactattattttt
tcttaatggatgcaaacatttttttttttttttgtcaaatggatccactg
cttgataactgtaacatgaccattctgaagaaagatgggaaaacagatga
tcttagagaatggtatagccacagaggagagaagaaagcttggagggtct
gaggtctccaagagcttcagtggtatgctccttccacaggggtggagtga
tcatataaacttcagaagcacgtaattgaaagagttagattgctggatag
ccctct
gaattctcatatgtacagcagtgactggaagtatataaacttcaatagca
ataaattcaggacatatagagaaataggaaagcagaaacagggggctata
taagatcacattttattttatgtgtgtatgggattctacaaagaaaagtt
aaagtgaaatataaaagtacttaaaataaattcatagatcagcatacaat
taggactagggtaaataaagatcccatatcccctaaagaaatagaagcag
ttattaatagtctcccagccaaaaaaagcccaggaccagatgggtttagt
gcagagttctatcagaccttcaaagaagatctaattccagttctgcacaa
actatttcacaagatagaagtagaaggtactctacccaactcattttatg
aagccactattactctgatacctaaaccacagaaagatccaacaaagata
gagaacttcagaccaatttctcttatgaatatcgatgcaaaaatccttaa
taaaattctcgctaaccgaatccaagaacacattaaagaaatcatccatc
ctgaccaagtaggttttattccagggatgcagggatggtttaatatacga
aaatccatcaatgtaatccattatataaacaaactcaaagacaaaaacca
catgatcatctcgttagatgcagaaaaagcatttgacaagatccaacacc
cattcatgataaaagttttggaaagatcaggaattcaaggcccataccta
aacataataaaagcaatctacagcaaaccagtagccaacatcaaagtaaa
tggagagaagctgggaagcaatcccactaaaatcagggactagacaaggt
tgcccactttctccctaccttttcaacatagtacttgaagtattagccag
agcaattcgacaacaaatggagatcaaggggatacaaattgggaaaagag
gaagtcaaaatacacttttttgcagatgatatgatagtatatataagtga
ccctaaaaattccaccagagaactctaaactgataaacagcttcggtgaa
gtagctggatataaatactcaaacagtcatggctttcttctacacaagat
aacagctgagaaagaaatagaaacaacacctccatagtcacaataataaa
ttccgctgactactagagtaagatttgatataaaacttctaagctcctct
gtgaaaggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_75015810_75017029
seq2: B6Ng01-042P16.b_45_1250

seq1  GAATTCTTTATGATATGTACAATTTCAGTAAAAAGAAAAAAATGAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATGATATGTACAATTTCAGTAAAAAGAAAAAAATGAATTAA  50

seq1  AGTTAACTTTTGTGGTGGCACAGAGATTCATTCACAAAGATTCTCCTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTTTTGTGGTGGCACAGAGATTCATTCACAAAGATTCTCCTAGC  100

seq1  TCAGTAAATAAACCAATGCCATTAAAACACACCATATGTGTGGAAGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAATAAACCAATGCCATTAAAACACACCATATGTGTGGAAGTATC  150

seq1  TCAAAAAATTAATAAAAAATACTATATTTACACATGGAAATGATCATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAATTAATAAAAAATACTATATTTACACATGGAAATGATCATGAA  200

seq1  GAAGAGCCTAGGGTCCATTGTCTCCTTCAAGGTCATACTTCCCATAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCCTAGGGTCCATTGTCTCCTTCAAGGTCATACTTCCCATAAACT  250

seq1  AACTTTTCCTCTAAGCCCTTCTTAACAGTTCAAAGAAAAGTTAAAAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCCTCTAAGCCCTTCTTAACAGTTCAAAGAAAAGTTAAAAATTT  300

seq1  AGACAAGTTAAAAAGTTAATAAAGAAGCTGTGTATGGTGGTGCATACCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGTTAAAAAGTTAATAAAGAAGCTGTGTATGGTGGTGCATACCTT  350

seq1  TTATCTCAGCACTCAGGGGTCAGATATCTATGAGTTCAAGACTAGCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCAGCACTCAGGGGTCAGATATCTATGAGTTCAAGACTAGCCAGG  400

seq1  CTAGCTAGGGCTATAAATTGAGACCCTGTTTCAATAAGTTAGTTAATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTAGGGCTATAAATTGAGACCCTGTTTCAATAAGTTAGTTAATAAC  450

seq1  TAATAAATGAAAAAAAAACCAGATAGTTGGATAGAGGGAAGGATGGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGAAAAAAAAACCAGATAGTTGGATAGAGGGAAGGATGGATGG  500

seq1  ATGGACAAACTGATCGCTTACACAACTTGTCCCAAATCTGCGTTAATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAAACTGATCGCTTACACAACTTGTCCCAAATCTGCGTTAATTTC  550

seq1  AACACTGTCCATCTCAAAAGAAATGAGATATGTAGCAGGTCTTTTGAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGTCCATCTCAAAAGAAATGAGATATGTAGCAGGTCTTTTGAATA  600

seq1  TTAAATTTCAGTAAAATGAGAATAACTGAAACGTTTTTCTTTCCTGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTCAGTAAAATGAGAATAACTGAAACGTTTTTCTTTCCTGGTGG  650

seq1  AAACAAATGACTGACAGAATTGTACTGATCCAGTTTGCCAGGAGTGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATGACTGACAGAATTGTACTGATCCAGTTTGCCAGGAGTGTATG  700

seq1  CTTGCAGTGTGATTTCACACAACTTTGAAAGTAGACATGGGGGCAGGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGTGTGATTTCACACAACTTTGAAAGTAGACATGGGGGCAGGGCA  750

seq1  GGAAACCGGGCCGGGAGTGCACTTACTTAGAGGTGAAATCCAATTGTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCGGGCCGGGAGTGCACTTACTTAGAGGTGAAATCCAATTGTCTG  800

seq1  GGGAAATCTATTTTGCATGCAAGGATTTTCTGGTAAATCCCAAACGGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCTATTTTGCATGCAAGGATTTTCTGGTAAATCCCAAACGGGTT  850

seq1  GTCATCGAAAAATGGGGGAAACCTGTCACAGAGAGAAGCATGGATATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCGAAAAATGGGGGAAACCTGTCACAGAGAGAAGCATGGATATTTA  900

seq1  GTAGAGAGTTAAATACAGAATTATATCTATTTTGTGTTAACTATTATTTT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTAGAGAGTTAAATACAGAATTATATCTATTTTG-GTTAACTATTATTTT  949

seq1  TTCTTAATGGATGCAAACA--TTTTTTTTTTTTTGTCAAATGGATCCACT  998
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TTCTTAATGGATGCAAACATTTTTTTTTTTTTTTGTCAAATGGATCCACT  999

seq1  GCTTGATAACTGTTAACATGACCA-TCTGAAGACAGATGGG-AAACAGAT  1046
      |||||||||||| ||||||||||| |||||||| ||||||| ||||||||
seq2  GCTTGATAACTG-TAACATGACCATTCTGAAGAAAGATGGGAAAACAGAT  1048

seq1  GATCTTAGGAGATGGTATAGCCACAGGAGGAGAG-AGACAGCATGGAGGG  1095
      ||||||||   |||||||||||||| |||||||| ||| ||| |||||||
seq2  GATCTTAGAGAATGGTATAGCCACA-GAGGAGAGAAGAAAGCTTGGAGGG  1097

seq1  TCCTGAGGGCTCCCAAAGAGCTTCAGTTGATAGCTTCCTTCCCAGCAGGG  1145
      | |||||| ||||  ||||||||||| || ||   |||||||   || ||
seq2  T-CTGAGGTCTCC--AAGAGCTTCAG-TGGTATGCTCCTTCC--ACA-GG  1140

seq1  GGTGGAAGTGATCATTATAAACCTTCAAGAAGCCAGGTTTAGTGGGAAGA  1195
      ||||| |||||||| |||||| |||| ||||||  |   || | | ||| 
seq2  GGTGG-AGTGATCA-TATAAA-CTTC-AGAAGCACG---TAATTGAAAG-  1182

seq1  AGTTAGATTGCTGGAGATGCCCTCT  1220
      ||||||||||||||| | |||||||
seq2  AGTTAGATTGCTGGATA-GCCCTCT  1206