BAC Information

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BAC

Clone NameB6Ng01-044H01
ChromosomeX (Build37)
Map Location 164,517,844 - 164,644,817
singlet/doubletdoublet
Overlap geneFrmpd4
Upstream geneLOC627268, Tmsb4x, Tlr8, Tlr7, Prps2, EG627311
Downstream geneEG667822, EG637566, Msl31, Arhgap6, Amelx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044H01.bB6Ng01-044H01.g
ACCDH870191DH870192
length1,051340
definitionDH870191|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H01, 5' end.DH870192|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,517,844 - 164,518,875)(164,644,485 - 164,644,817)
sequence
gaattccctcgaagtttcagacttaaaagaaaatgtcaattgaacacatt
gactgatctgatttgtgtggtggtgaatccattacaattctaactctacc
tctgtgtggtcctggtactatcttgtatggttaattttccagaaaattga
tgcacaatttcaccaaaacttgtcaaattttaacaccgttcatttaactt
tgggctggttcagcagaaagaactggccaagaaagaaacctcaacacaca
cacacacacaggaatatgttttcaaagactggaagttagacatggaaaac
ataattaagctctgtagaatattgcttattgacttacaataatcccaaag
caaagaagaaatgccagattaaagaatcatgatatatatttgttaagaat
atagaaaacacaaacattgtatgaaatacatgtcccataagaaaattgta
ataaacacctaaaaggattgtatttaacattcaatattgaaatgtatttt
tatagccaagatgtcaatattaagatactttcttaaaaacgaaatcatga
actttacaagtaaaagaaaggaagtcaaaaagatcatattgagggaggta
atgtaaacccaggaagacaaatgtcacatgttatttctcacttgatgatt
ctttttcctaatgttcatatatgagtacatagcctggagtaaatacagaa
atcaagaaaatcaagcaggaccactcctaggatgaaaggattgcgaagaa
ataacaagaagaacctcaagttaaaaatgttctgatcaaggaaatgggaa
gcagggcttccttggggaaagggagggaggtatacatagacaaagaagtg
aggaggggaaaattgcaattaggctgtctgtaaagtcaaagaatcccacg
attaactttgccaaaggaaaacgccctataatacatataattatgtataa
ataaacatatatagttttaatgacattactcatctgagttgacaatttgc
tcccatgagcaaagactacctttaaaaaccaaatacaacaaaacaaacaa
g
aaactcttcatacttgccctatgcttctagaaaatttaaactaattctga
ggagaaggaagatatgaatgggtaaagacaaagcatttgtaggacagtaa
aaatacttcatatgatcaatactgtattattggatgcttgatgtgatatt
tgtccgaactcacaaaagacaaatcaccaggagagtaaacacactaacat
atactctgggttttacttgagcctgatatgctaaagtaggattgtcataa
cttttgatgtatcacttcggtggcagatgtaaatgatgatgtgtgtgtgt
gtgtgtgtgtgtgaatggggtacatggcaaatcccgacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_164517844_164518875
seq2: B6Ng01-044H01.b_45_1072

seq1  GAATTCCCTCGAAGTTTCAGACTTAAAAGAAAATGTCAATTGAACACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCGAAGTTTCAGACTTAAAAGAAAATGTCAATTGAACACATT  50

seq1  GACTGATCTGATTTGTGTGGTGGTGAATCCATTACAATTCTAACTCTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATCTGATTTGTGTGGTGGTGAATCCATTACAATTCTAACTCTACC  100

seq1  TCTGTGTGGTCCTGGTACTATCTTGTATGGTTAATTTTCCAGAAAATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTGGTCCTGGTACTATCTTGTATGGTTAATTTTCCAGAAAATTGA  150

seq1  TGCACAATTTCACCAAAACTTGTCAAATTTTAACACCGTTCATTTAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAATTTCACCAAAACTTGTCAAATTTTAACACCGTTCATTTAACTT  200

seq1  TGGGCTGGTTCAGCAGAAAGAACTGGCCAAGAAAGAAACCTCAACACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGTTCAGCAGAAAGAACTGGCCAAGAAAGAAACCTCAACACACA  250

seq1  CACACACACAGGAATATGTTTTCAAAGACTGGAAGTTAGACATGGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGGAATATGTTTTCAAAGACTGGAAGTTAGACATGGAAAAC  300

seq1  ATAATTAAGCTCTGTAGAATATTGCTTATTGACTTACAATAATCCCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAAGCTCTGTAGAATATTGCTTATTGACTTACAATAATCCCAAAG  350

seq1  CAAAGAAGAAATGCCAGATTAAAGAATCATGATATATATTTGTTAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGAAATGCCAGATTAAAGAATCATGATATATATTTGTTAAGAAT  400

seq1  ATAGAAAACACAAACATTGTATGAAATACATGTCCCATAAGAAAATTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAACACAAACATTGTATGAAATACATGTCCCATAAGAAAATTGTA  450

seq1  ATAAACACCTAAAAGGATTGTATTTAACATTCAATATTGAAATGTATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACCTAAAAGGATTGTATTTAACATTCAATATTGAAATGTATTTT  500

seq1  TATAGCCAAGATGTCAATATTAAGATACTTTCTTAAAAACGAAATCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCAAGATGTCAATATTAAGATACTTTCTTAAAAACGAAATCATGA  550

seq1  ACTTTACAAGTAAAAGAAAGGAAGTCAAAAAGATCATATTGAGGGAGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACAAGTAAAAGAAAGGAAGTCAAAAAGATCATATTGAGGGAGGTA  600

seq1  ATGTAAACCCAGGAAGACAAATGTCACATGTTATTTCTCACTTGATGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAACCCAGGAAGACAAATGTCACATGTTATTTCTCACTTGATGATT  650

seq1  CTTTTTCCTAATGTTCATATATGAGTACATAGCCTGGAGTAAATACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTAATGTTCATATATGAGTACATAGCCTGGAGTAAATACAGAA  700

seq1  ATCAAGAAAATCAAGCAGGACCACTCCTAGGATGAAAGGATTGCGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAAAATCAAGCAGGACCACTCCTAGGATGAAAGGATTGCGAAGAA  750

seq1  ATAACAAGAAGAACCTCAAGTTAAAAATGTTCTGATCAAGGAAATGGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAGAAGAACCTCAAGTTAAAAATGTTCTGATCAAGGAAATGGGAA  800

seq1  GCAGGGCTTCCTTGGGGAAAGGGAGGGAGGTATACATAGACAAAGAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCTTCCTTGGGGAAAGGGAGGGAGGTATACATAGACAAAGAAGTG  850

seq1  AGGAGGGGAAAATTGCAATTAGGCTGTCTGTAAAAGTCAAAGAATCCCAC  900
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGGAGGGGAAAATTGCAATTAGGCTGTCTGT-AAAGTCAAAGAATCCCAC  899

seq1  GATTAACTTTGCCAAAGGAAAACGCCCTATAATACATATAATTATGTATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACTTTGCCAAAGGAAAACGCCCTATAATACATATAATTATGTATA  949

seq1  AATAAACATATATAGTTTTAATGAACATTACTCATCTGAGTTGACAATTT  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AATAAACATATATAGTTTTAATG-ACATTACTCATCTGAGTTGACAATTT  998

seq1  GCTCCCCATGAGCCAAAGACTACCTTTAAAAA  1032
      ||| |||||||| |||||||||||||||||||
seq2  GCT-CCCATGAG-CAAAGACTACCTTTAAAAA  1028

seq1: chrX_164644485_164644817
seq2: B6Ng01-044H01.g_66_398 (reverse)

seq1  CCATGTACCCCATTCACACACACACACACACACACACATCATCATTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTACCCCATTCACACACACACACACACACACACATCATCATTTACA  50

seq1  TCTGCCACCGAAGTGATACATCAAAAGTTATGACAATCCTACTTTAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACCGAAGTGATACATCAAAAGTTATGACAATCCTACTTTAGCAT  100

seq1  ATCAGGCTCAAGTAAAACCCAGAGTATATGTTAGTGTGTTTACTCTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGCTCAAGTAAAACCCAGAGTATATGTTAGTGTGTTTACTCTCCTG  150

seq1  GTGATTTGTCTTTTGTGAGTTCGGACAAATATCACATCAAGCATCCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTGTCTTTTGTGAGTTCGGACAAATATCACATCAAGCATCCAATA  200

seq1  ATACAGTATTGATCATATGAAGTATTTTTACTGTCCTACAAATGCTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTATTGATCATATGAAGTATTTTTACTGTCCTACAAATGCTTTGT  250

seq1  CTTTACCCATTCATATCTTCCTTCTCCTCAGAATTAGTTTAAATTTTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCCATTCATATCTTCCTTCTCCTCAGAATTAGTTTAAATTTTCTA  300

seq1  GAAGCATAGGGCAAGTATGAAGAGTTTGAATTC  333
      |||||||||||||||||||||||||||||||||
seq2  GAAGCATAGGGCAAGTATGAAGAGTTTGAATTC  333