BAC Information

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BAC

Clone NameB6Ng01-044H24
ChromosomeX (Build37)
Map Location 31,741,976 - 32,005,664
singlet/doubletdoublet
Overlap geneLOC100040698, LOC630028, LOC100040722, LOC100040732, LOC100040743, LOC385298
Upstream geneLOC665014, EG546205, LOC100040533, LOC100039328, LOC100040552, LOC100040575, LOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662, LOC100039419, LOC100039429
Downstream geneLOC100039460, LOC100040781, LOC100039515, LOC100039522, LOC100039473, LOC100039550, LOC100039557, LOC100039573, EG665074, LOC100039585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044H24.bB6Ng01-044H24.g
ACCDH870234DH870235
length1,102936
definitionDH870234|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H24, 5' end.DH870235|Mus musculus domesticus DNA, BAC clone: B6Ng01-044H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,004,543 - 32,005,664)(31,741,976 - 31,742,871)
sequence
gaattccccaaaaggggaacaagagactctcctcagtgactggctgttct
tttcccagatactaggtgctctgctgagtctagagccctgcccccatagg
atagttgcaaatctgtttggaagtcaggaagagctgtaaagtgcctctcc
tccctccattttagtgtcctgagcttccctgcctgctgcccccagtcccc
tctgttttccctggctgcttccaggtacccacctccgggctccaccttgt
tctttccagaacctcagtctggctctgaaggacatccccagtttctgctg
ctcactgcagatcccccctcccaactcttcccctttgtcttcccctaggc
gggggttcccactgctactttgtttctcctgaggggctcagtcccatccc
cctccaccaccaccactgctccaggacgcccaccttttggcctgcccttt
ctagtgtcctactgccagagatagtggctgccagaggggctccggacacc
ttgtggccacttctgctaaaggcctgaggagaggtgaaggagtccagccc
agggagagctcgccagaggtgagaaggaaagatcctcctgctgcaggagg
caagagttgtgtgagcccgtgactgggcaggtgaagtgactgttgctggt
gtcctggtgctgttggtgtgctcccgggtccttcagcttagctctctgga
ggccaagatcctttgccaccttgagattcagccaaaggcttcagcaataa
tagttccctcccctttcccagagaccagcctcctgcctgcaaagagttgc
ctccctactacctatccccttccactgttttagagttctgttccactaga
acagaactcaggtgatcaattcgttctggctccatggtctttgcaaaacc
gttttttacctggcccgggatcctcatttttttctgcgatatttatatcc
tttggtaattttttatttaaatcctttcatgtgggagttattaagacact
ctattgtctgatctctgatagcctctcccccaagaagaaaagggtcaaag
cggccaccgatgcacgttctggaacaccatagaaaattcagcccttatca
gc
gaattcacaggtttttatatttcttcactcagtttagggatgaaagctaa
gtcattttcttcctttctggaaaagcactatttaaatggcattcatcttt
gtcatataccctctaaatatcagggaacattggaggctcttcttttctat
tttttggtgtccaccctattatcagttttccattgcatgttcattgagat
tagccagctcttttcttcctgatgcttcccactgagtatgaaataatgca
aggtagtatgtttgttggcttgcttgtatgtcactgtcaggacaagttta
atgtgtcctatgccctatgtttgcatgtttatagaatttaacgtgttgag
aggaggagaaatgtaagcacacctttaccctcatgaaggagatgcaccta
gtgtgtgtgtgtgtgtgtgacagagagagagacagagagagagagagaga
gaaagagagagagagagagagagagactgtctctgactctgtgtctgtgt
ctctgtcagtgttattgtctattatgtgtctgtgactatgtctgtgtctg
ggttacaggcagggtttctctgtgtagcccaggctgtcctggaacttagt
ctgtaggtcaaactcagtgagatttgcctgactctgcctctgcctccgcc
tctacctccacctctgcctctacctcctctgagtactaggttttaaaggc
atgcactaccaaaaccgagctccaagggaagtttttataaaggaaaatat
ttaattgcgactgactcacagtttcagcagtttaattaattattgtcatg
gtgggacgcatggctgtgtgcaggcaggtgtgaatttggagaaggagctg
gaaaatcttgatccacaggcagcagaagaagattgcatgccacacctgac
atagctagggtataggagacattaaagattgtcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_32004543_32005664
seq2: B6Ng01-044H24.b_43_1144 (reverse)

seq1  GCTGATTTAGGGCTGAAATATTCTGTGGTTGTTCTCAGAATGGTGCATCG  50
      ||||| | ||||||| ||| |||| ||| ||||| |||||  ||||||||
seq2  GCTGA-TAAGGGCTG-AATTTTCTATGG-TGTTC-CAGAA-CGTGCATCG  45

seq1  GTGGCCCGCTTTGACCCCCTTTTCTTCTTGGGGAGAGGGGCCCAATTCAG  100
      |||| |||||||||  ||||||||||||||||| ||| |||     ||||
seq2  GTGG-CCGCTTTGA--CCCTTTTCTTCTTGGGG-GAGAGGC---TATCAG  88

seq1  AGATCAAGACAATAGAGTTGTCTTAATAACTCCCAACATGAAAGGATTTA  150
      ||||| ||||||||||| |||||||||||||||| |||||||||||||||
seq2  AGATC-AGACAATAGAG-TGTCTTAATAACTCCC-ACATGAAAGGATTTA  135

seq1  AACTAAAGAAATTAACCAAAGGATATAATTATCGCAGAAAAAAATGGAGG  200
      || |||| ||||| |||||||||||||| |||||||||||||||| ||||
seq2  AA-TAAA-AAATT-ACCAAAGGATATAAATATCGCAGAAAAAAAT-GAGG  181

seq1  ATTCCCGGCCAGGTTAAAAAAGGTTTTGCAAAGACCATGAAGCCAGAACG  250
      || || |||||||| ||||| |||||||||||||||||| ||||||||||
seq2  ATCCCGGGCCAGGTAAAAAACGGTTTTGCAAAGACCATGGAGCCAGAACG  231

seq1  AATTGATCACCCTGAGTTCTGTTCTAGTGGAACAGAACTCTAAAACAGTG  300
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATCA-CCTGAGTTCTGTTCTAGTGGAACAGAACTCTAAAACAGTG  280

seq1  GAAGGGGATAGGTAGTAGGGAGGGGACTCTTTGCAGGGAGGAAGCTGGTC  350
      |||||||||||||||||||||||  |||||||||||| |||| |||||||
seq2  GAAGGGGATAGGTAGTAGGGAGGCAACTCTTTGCAGGCAGGAGGCTGGTC  330

seq1  TCTGGGAAAGGGGAGGGAACTATTATTGCTGAAGCCTTTGGCTGAATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAAGGGGAGGGAACTATTATTGCTGAAGCCTTTGGCTGAATCTC  380

seq1  AAGGTGGCAAAGGATCTTGGCCTCCAGAGAGCTAAGCTGAAGGACCCGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGCAAAGGATCTTGGCCTCCAGAGAGCTAAGCTGAAGGACCCGGG  430

seq1  AGCACACCAGCAACACCAGGACACCAGCAACAGTCACTTCATCTGCCCAG  500
      ||||||||| || |||||||||||||||||||||||||||| ||||||||
seq2  AGCACACCAACAGCACCAGGACACCAGCAACAGTCACTTCACCTGCCCAG  480

seq1  TCACGGGCTCACACAACTCTTGCCTCCTGCAGCAGGAGGATCTTTCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGGGCTCACACAACTCTTGCCTCCTGCAGCAGGAGGATCTTTCCTTC  530

seq1  TCACCTCTGGCAAGCTCTCCCTGGGCTGGACTCCTTCACCTCTCCTCAGG  600
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTGGCGAGCTCTCCCTGGGCTGGACTCCTTCACCTCTCCTCAGG  580

seq1  CTTTTAGCAGAAGTGGCCACAAGGTGTCCAGAGCCCCTCTGGCAGCCACT  650
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCTTTAGCAGAAGTGGCCACAAGGTGTCCGGAGCCCCTCTGGCAGCCACT  630

seq1  ATCTCTGGCAGTAGGACACTAGAAAGGGCAGGCTAAAAGGTGGGCGTCCT  700
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATCTCTGGCAGTAGGACACTAGAAAGGGCAGGCCAAAAGGTGGGCGTCCT  680

seq1  GGAGCAGTGGTGGTGGTGGAGGGGGATGGGACTGAGCCCCCCAGGAGAAA  750
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGAGCAGTGGTGGTGGTGGAGGGGGATGGGACTGAGCCCCTCAGGAGAAA  730

seq1  CAAAGTAGCAGTGGGAACCCCCGCACAGGGGAAGACAAAGGGGAAGAGTT  800
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  CAAAGTAGCAGTGGGAACCCCCGCCTAGGGGAAGACAAAGGGGAAGAGTT  780

seq1  GGGAGGGGGGATCTGCAGTGAGCAGCAGAAACTGGGGATGTCCTTCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGGGATCTGCAGTGAGCAGCAGAAACTGGGGATGTCCTTCAGAG  830

seq1  CCAGACTGAGGTTCTGGAAAGAACAAGGTGGAGCCCGGAGGTGGGTACCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTGAGGTTCTGGAAAGAACAAGGTGGAGCCCGGAGGTGGGTACCT  880

seq1  GGAAGCAGCCAGGAAAAACAGAGGGGACTGGGGGCAGCTGGCAGGGAAGC  950
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  GGAAGCAGCCAGGGAAAACAGAGGGGACTGGGGGCAGCAGGCAGGGAAGC  930

seq1  TCAGGACACTAAAATGAAGGGAGGAGAGGCACTTTAAAGCTCTTCTTGAC  1000
      |||||||||||||||| ||||||||||||||||||| |||||||| ||||
seq2  TCAGGACACTAAAATGGAGGGAGGAGAGGCACTTTACAGCTCTTCCTGAC  980

seq1  TTCCAAACAGATTTGCAACTATCCTATGGGGGCAGGGCTCTAGACTCAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACAGATTTGCAACTATCCTATGGGGGCAGGGCTCTAGACTCAGC  1030

seq1  AGAGCACCTAGTATCTGGGAAAAGAACAGCCAGTTACTGAGGAGAGTCTC  1100
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGAGCACCTAGTATCTGGGAAAAGAACAGCCAGTCACTGAGGAGAGTCTC  1080

seq1  TTGTTCCCCTTTTGGGGAATTC  1122
      ||||||||||||||||||||||
seq2  TTGTTCCCCTTTTGGGGAATTC  1102

seq1: chrX_31741976_31742871
seq2: B6Ng01-044H24.g_65_937

seq1  GAATTCACAGGTTTTTATATTTCTTCACTCAGTTTAGGGATGAAAGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTTTTTATATTTCTTCACTCAGTTTAGGGATGAAAGCTAA  50

seq1  GTCATTTTCTTCCTTTCTGGAAAAGCACTATTTAAATGGCATTCGTCTTT  100
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTCATTTTCTTCCTTTCTGGAAAAGCACTATTTAAATGGCATTCATCTTT  100

seq1  GTCATATACCCTCTAAATATCAGGGAACATTGGAGGCTCTTCTTTTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATACCCTCTAAATATCAGGGAACATTGGAGGCTCTTCTTTTCTAT  150

seq1  TTTTTGGTGTCCACCCTATTATCAGTTTTCCATTGCATGTTCATTGAGTT  200
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTTTGGTGTCCACCCTATTATCAGTTTTCCATTGCATGTTCATTGAGAT  200

seq1  TAGCCAGCTCTTTTCTTCCTGATGCTTCCCACTGAGTATGAAATAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGCTCTTTTCTTCCTGATGCTTCCCACTGAGTATGAAATAATGCA  250

seq1  AGGTAGTATGTTTGTTTGCTTGCTTGTATGTCACTGTCAGAACAAGTTTA  300
      |||||||||||||||| ||||||||||||||||||||||| |||||||||
seq2  AGGTAGTATGTTTGTTGGCTTGCTTGTATGTCACTGTCAGGACAAGTTTA  300

seq1  ATGTGTCCTATGCCCTATGTTTGCACGTTTATAGAATTTAACGTGTTGAG  350
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGTGTCCTATGCCCTATGTTTGCATGTTTATAGAATTTAACGTGTTGAG  350

seq1  AGGAGGAGAAATGTAAGCACACCTTTACCCTCATGAAGGAGATGCACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGAAATGTAAGCACACCTTTACCCTCATGAAGGAGATGCACCTA  400

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGACAGA  450
                                ||||||||||||||||||||||||
seq2  --------------------------GTGTGTGTGTGTGTGTGTGACAGA  424

seq1  GAGAGAGACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  500
      |||||||||| ||||||||||||||||| |||||||||||||||||||||
seq2  GAGAGAGACAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGA  474

seq1  GACTGTCTCTGACTCTGTGTCTGTGTCTCTGTCAGTGTTATTGTCTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCTCTGACTCTGTGTCTGTGTCTCTGTCAGTGTTATTGTCTATTA  524

seq1  TGTGTCTGTGACTATGTCTGTGTCTGGGTTACAGGCAGGGTTTCTCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTGACTATGTCTGTGTCTGGGTTACAGGCAGGGTTTCTCTGTG  574

seq1  TAGCCCAGGCTGTCCTGGAACTTAGTCTGTAGGTCAAACTCAGTGAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCAGGCTGTCCTGGAACTTAGTCTGTAGGTCAAACTCAGTGAGATT  624

seq1  TG-CTGACTCTGCCTCTGCCTCCGCCTCTACCTCCACCTCTGCCTCTACC  699
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGACTCTGCCTCTGCCTCCGCCTCTACCTCCACCTCTGCCTCTACC  674

seq1  TCCTCTGAGTACTAGG-TTTAAAGGCATGCACTACCAAAACCGAGCTCCA  748
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCTCTGAGTACTAGGTTTTAAAGGCATGCACTACCAAAACCGAGCTCCA  724

seq1  A-GGAAGTTTTTATAAAGGAAAATATTTAATTGCGACTGACTCACAGTTT  797
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTTTTTATAAAGGAAAATATTTAATTGCGACTGACTCACAGTTT  774

seq1  CAGCAGTTTAATTAATTATTGTCATGGTGGGACGCATGGCTGTGTGCAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTTAATTAATTATTGTCATGGTGGGACGCATGGCTGTGTGCAGG  824

seq1  CAGGTGTGAATTTGGAGAAGGAGCTGGAAAATCTTGATCCACAGGCAGC  896
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGTGAATTTGGAGAAGGAGCTGGAAAATCTTGATCCACAGGCAGC  873