BAC Information

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BAC

Clone NameB6Ng01-044L17
ChromosomeX (Build37)
Map Location 80,503,048 - 80,655,536
singlet/doubletdoublet
Overlap geneDmd
Upstream geneEG629310
Downstream geneTsga8, LOC100042306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044L17.bB6Ng01-044L17.g
ACCDH870402DH870403
length1,1821,174
definitionDH870402|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L17, 5' end.DH870403|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,654,355 - 80,655,536)(80,503,048 - 80,504,221)
sequence
gaattcactcagtatattttatggaaatgaaattaatggacctagtgtct
ttctctcaagatgtatgtagttcaaactcagtgatgaggtgaggaatgaa
ttaggatattcttcactccagtctctgctgatgaggagagtaggaagcaa
ctacaatctgtttctcagaatccatgtcattctacctctgactgctcagc
taaagagatagagaatgaactagtgtgttatctacctctgtctatacaat
ggaaaaagcttggaagaagctagctactttctaacatctattttctaact
ctcatctctcatgatctaccttatagaagtaaagctcctctcatgtagta
actatcatctctcagtatctctatcataataacattgatctttccgaaag
ataaggataggtatggtatagtttgctctacattattttcaatcccatgg
gaaagtgcttgaggaaactagagtcattctcacagaatccatgttcttaa
tctttaccaaaaaagattaggaatgatatacttagctttacacctcaatc
tttccagaagggaactagtgtctattttaaaatccttgtccatctaactc
tttatttctaacagagaaccataaaagtacactagtgtgttctcttgctc
agtgtgtccaatggagaaagcatggaagaaacttgtcactgtctttcaga
atccatgtcataactacatctgttttattgagaaaaaaatggtaacagtg
tgttctcctgctcagtattctactgaggaggattggaagaaagtactata
tttcaaaaattcatgttctcttaaacttaatatgacctactcataaggat
gagaatgatttcacatgatctattattcagtatatcctatggaggaagac
agagcagaactactgtctttcttttgaacttgtttttaacttgtcacatg
tgagccagactgcaattgtgagcccaactcttcactggcctttgggaatg
agctttcttggttctgttgctgattgagattcgccaagtatggagggtca
tctcctttaagcttcttcgatgtctcattctgatgccctgcaatctatct
tggatctgttctccagagaaatcagggtaatttctaacttagccttgtcc
ttacagggaaggcttatagagatctttagtgt
gaattcacagaacttataatgggaattggagaggatgagactattatagg
caagaacttgagctttgaaggacttattaaccaagatctaatgtaaaagg
aagctggaaagattaaaaaaaaatcagatttgatatctgaccttacactg
ataaaccagtcatataaataccaacatgtttttgaaattggggtctcaaa
gtaagcattgtctcaagatattttacacaatgaaatggctatcatagtaa
ttattcttctcacgatgaaattatgtcaaacttttcttataaggtcagat
aattttcaataggacatttgctcatgaatttataacattagaatgttgtc
attctgaaggtcaaaggacatcatcatctttgaataaatgcctggaacaa
gacatttttacattttctagaagttgtgggctttagttcatttaaatgta
tacaatataaccaaccctctgtcctatttttattaccatcctaataaatt
attcatgattttaatatttatgtagactgtattttggttgcatgattgat
ttggcttaatctacaaattagcgtgttccccctcagcctttgcaattcta
tatgccactaccttctccttcaaagtgtactgtaatagcattctagctga
tgtccctcttattttcttgcccccgtctacctgctctattttacagcatt
tgatacaacctttttaaaaggtcaattaaaacatttcacctcttcattaa
aactattctgcttctactaagaatcagtctaaccctgttaccttgacata
tatatgggccatgcttttcttttaaatttcaacatataaatcttaataat
aacttcaatttggaaagtgcagtaactaactgcaaaactacatgatcaaa
gaagaatatgcagtctgtatctatgtgtgctcacttgaaaagaattatat
gatttatattgtgctaaatggacactgagcaatcaaccaggcagcataca
acaacaggtatgaggccgctgacacatatacagcaaaagacctctggttc
tagccttctttgaaagaagagcacttagtcctttgaggtactagaaggta
ccaagggaggaatggagtctatgggggccggtcagggggtagggacatct
ctctgggattgggggagggtaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_80654355_80655536
seq2: B6Ng01-044L17.b_47_1228 (reverse)

seq1  ACACT--AGATCTCTATAAGCCTCCCCTGT-AGGAC-AGACTAAGTTGGA  46
      |||||  |||||||||||||||| |||||| ||||| || ||||||| ||
seq2  ACACTAAAGATCTCTATAAGCCTTCCCTGTAAGGACAAGGCTAAGTTAGA  50

seq1  GAATATCCCTGATTCCTCTGTAGAACAGATCAAGGATAGGATTGCAGGGC  96
       |||  |||||||| ||||| |||||||||| | |||| |||||||||||
seq2  -AATTACCCTGATTTCTCTGGAGAACAGATCCAAGATA-GATTGCAGGGC  98

seq1  ATCAG-ATGAGACATCGAGGAAGCTTTAAAGAGATGACCCCTCCATTACT  145
      ||||| |||||||||||| ||||||| || ||||||| ||||||| ||||
seq2  ATCAGAATGAGACATCGAAGAAGCTTAAAGGAGATGA-CCCTCCA-TACT  146

seq1  TGGCGAATCTCAATCAGCAACAGAACCAAGAAAGCTCATTCCCAAAGGCC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGAATCTCAATCAGCAACAGAACCAAGAAAGCTCATTCCCAAAGGCC  196

seq1  AGTGAAGAGTTGGGCTCACAATTGCAGTCTGGCTCACATGTGACAAGTTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAGTTGGGCTCACAATTGCAGTCTGGCTCACATGTGACAAGTTA  246

seq1  AAAACAAGTTCAAAAAGAAAGACAGTAGTTCTGCTCTGTCTTCCTCCATA  295
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGTTC-AAAAGAAAGACAGTAGTTCTGCTCTGTCTTCCTCCATA  295

seq1  GGATATACTGAATAATAGATCATGTGAAATCATTCTCATCCTTATGAGTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATACTGAATAATAGATCATGTGAAATCATTCTCATCCTTATGAGTA  345

seq1  GGTCATATTAAGTTTAAGAGAACATGAATTTTTGAAATATAGTACTTTCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATATTAAGTTTAAGAGAACATGAATTTTTGAAATATAGTACTTTCT  395

seq1  TCCAATCCTCCTCAGTAGAATACTGAGCAGGAGAACACACTGTTACCATT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCCTCCTCAGTAGAATACTGAGCAGGAGAACACACTGTTACCATT  445

seq1  TTTTTCTCAATAAAACAGATGTAGTTATGACATGGATTCTGAAAGACAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCAATAAAACAGATGTAGTTATGACATGGATTCTGAAAGACAGT  495

seq1  GACAAGTTTCTTCCATGCTTTCTCCATTGGACACACTGAGCAAGAGAACA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTTTCTTCCATGCTTTCTCCATTGGACACACTGAGCAAGAGAACA  545

seq1  CACTAGTGTACTTTTATGGTTCTCTGTTAGAAATAAAGAGTTAGATGGAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTGTACTTTTATGGTTCTCTGTTAGAAATAAAGAGTTAGATGGAC  595

seq1  AAGGATTTTAAAATAGACACTAGTTCCCTTCTGGAAAGATTGAGGTGTAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTTAAAATAGACACTAGTTCCCTTCTGGAAAGATTGAGGTGTAA  645

seq1  AGCTAAGTATATCATTCCTAATCTTTTTTGGTAAAGATTAAGAACATGGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTATATCATTCCTAATCTTTTTTGGTAAAGATTAAGAACATGGA  695

seq1  TTCTGTGAGAATGACTCTAGTTTCCTCAAGCACTTTCCCATGGGATTGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGAATGACTCTAGTTTCCTCAAGCACTTTCCCATGGGATTGAA  745

seq1  AATAATGTAGAGCAAACTATACCATACCTATCCTTATCTTTCGGAAAGAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTAGAGCAAACTATACCATACCTATCCTTATCTTTCGGAAAGAT  795

seq1  CAATGTTATTATGATAGAGATACTGAGAGATGATAGTTACTACATGAGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTATTATGATAGAGATACTGAGAGATGATAGTTACTACATGAGAG  845

seq1  GAGCTTTACTTCTATAAGGTAGATCATGAGAGATGAGAGTTAGAAAATAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTACTTCTATAAGGTAGATCATGAGAGATGAGAGTTAGAAAATAG  895

seq1  ATGTTAGAAAGTAGCTAGCTTCTTCCAAGCTTTTTCCATTGTATAGACAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAGAAAGTAGCTAGCTTCTTCCAAGCTTTTTCCATTGTATAGACAG  945

seq1  AGGTAGATAACACACTAGTTCATTCTCTATCTCTTTAGCTGAGCAGTCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGATAACACACTAGTTCATTCTCTATCTCTTTAGCTGAGCAGTCAG  995

seq1  AGGTAGAATGACATGGATTCTGAGAAACAGATTGTAGTTGCTTCCTACTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAATGACATGGATTCTGAGAAACAGATTGTAGTTGCTTCCTACTC  1045

seq1  TCCTCATCAGCAGAGACTGGAGTGAAGAATATCCTAATTCATTCCTCACC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCAGCAGAGACTGGAGTGAAGAATATCCTAATTCATTCCTCACC  1095

seq1  TCATCACTGAGTTTGAACTACATACATCTTGAGAGAAAGACACTAGGTCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACTGAGTTTGAACTACATACATCTTGAGAGAAAGACACTAGGTCC  1145

seq1  ATTAATTTCATTTCCATAAAATATACTGAGTGAATTC  1182
      |||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTCATTTCCATAAAATATACTGAGTGAATTC  1182

seq1: chrX_80503048_80504221
seq2: B6Ng01-044L17.g_68_1241

seq1  GAATTCACAGAACTTATAATGGGAATTGGAGAGGATGAGACTATTATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAACTTATAATGGGAATTGGAGAGGATGAGACTATTATAGG  50

seq1  CAAGAACTTGAGCTTTGAAGGACTTATTAACCAAGATCTAATGTAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACTTGAGCTTTGAAGGACTTATTAACCAAGATCTAATGTAAAAGG  100

seq1  AAGCTGGAAAGATTAAAAAAAAATCAGATTTGATATCTGACCTTACACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGAAAGATTAAAAAAAAATCAGATTTGATATCTGACCTTACACTG  150

seq1  ATAAACCAGTCATATAAATACCAACATGTTTTTGAAATTGGGGTCTCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACCAGTCATATAAATACCAACATGTTTTTGAAATTGGGGTCTCAAA  200

seq1  GTAAGCATTGTCTCAAGATATTTTACACAATGAAATGGCTATCATAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCATTGTCTCAAGATATTTTACACAATGAAATGGCTATCATAGTAA  250

seq1  TTATTCTTCTCACGATGAAATTATGTCAAACTTTTCTTATAAGGTCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTCTCACGATGAAATTATGTCAAACTTTTCTTATAAGGTCAGAT  300

seq1  AATTTTCAATAGGACATTTGCTCATGAATTTATAACATTAGAATGTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCAATAGGACATTTGCTCATGAATTTATAACATTAGAATGTTGTC  350

seq1  ATTCTGAAGGTCAAAGGACATCATCATCTTTGAATAAATGCCTGGAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAAGGTCAAAGGACATCATCATCTTTGAATAAATGCCTGGAACAA  400

seq1  GACATTTTTACATTTTCTAGAAGTTGTGGGCTTTAGTTCATTTAAATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTTACATTTTCTAGAAGTTGTGGGCTTTAGTTCATTTAAATGTA  450

seq1  TACAATATAACCAACCCTCTGTCCTATTTTTATTACCATCCTAATAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATATAACCAACCCTCTGTCCTATTTTTATTACCATCCTAATAAATT  500

seq1  ATTCATGATTTTAATATTTATGTAGACTGTATTTTGGTTGCATGATTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGATTTTAATATTTATGTAGACTGTATTTTGGTTGCATGATTGAT  550

seq1  TTGGCTTAATCTACAAATTAGCGTGTTCCCCCTCAGCCTTTGCAATTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTAATCTACAAATTAGCGTGTTCCCCCTCAGCCTTTGCAATTCTA  600

seq1  TATGCCACTACCTTCTCCTTCAAAGTGTACTGTAATAGCATTCTAGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACTACCTTCTCCTTCAAAGTGTACTGTAATAGCATTCTAGCTGA  650

seq1  TGTCCCTCTTATTTTCTTGCCCCCGTCTACCTGCTCTA-TTTACAGCATT  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTCCCTCTTATTTTCTTGCCCCCGTCTACCTGCTCTATTTTACAGCATT  700

seq1  TGATACAACCTTTTTAAAAGGTCAATTAAAACATTTCACCTCTTCATTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAACCTTTTTAAAAGGTCAATTAAAACATTTCACCTCTTCATTAA  750

seq1  AACTATTCTGCTTCTACTAAGAATCAGTTCTAACCCTGTTACCTTGACAT  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACTATTCTGCTTCTACTAAGAATCAG-TCTAACCCTGTTACCTTGACAT  799

seq1  ATATATGGGCCATGCTTTTCTTTTAAATTTCAACATATAATTCTTAATAA  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATATATGGGCCATGCTTTTCTTTTAAATTTCAACATATAAATCTTAATAA  849

seq1  TAACTTCAATTT-GAAAGTGCAGTAACTAACTGCAAAACTACATGATCAA  898
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAACTTCAATTTGGAAAGTGCAGTAACTAACTGCAAAACTACATGATCAA  899

seq1  AGAAGAATATGCAGTCTGTATCTATGTGTGCTCACTTGAAAAGAAATATA  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAAGAATATGCAGTCTGTATCTATGTGTGCTCACTTGAAAAGAATTATA  949

seq1  TGATTTAATATTGTGCTAAATGGACACTGAGCAATCAACCAGGCAGCATA  998
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTT-ATATTGTGCTAAATGGACACTGAGCAATCAACCAGGCAGCATA  998

seq1  CAACAACAGGTATGAGGCCGCTGACACATATACAGCAGAAGACCACCTGG  1048
      ||||||||||||||||||||||||||||||||||||| |||||| |  | 
seq2  CAACAACAGGTATGAGGCCGCTGACACATATACAGCAAAAGACCTCTGGT  1048

seq1  TCTAGCC-TCATTGAAAGAAGAAGCACCTAG-CCCTTGAGGTACTAGGAA  1096
      ||||||| || |||||||||| ||||| ||| || ||||||||||| |||
seq2  TCTAGCCTTCTTTGAAAGAAG-AGCACTTAGTCCTTTGAGGTACTA-GAA  1096

seq1  GGTACC-AGGGAGGAGTGAGGTCTAGTGGGGTCGGTCAGGGGGTAGGGAC  1145
      |||||| |||||||| ||  |||||  |||| ||||||||||||||||||
seq2  GGTACCAAGGGAGGAATGGAGTCTATGGGGGCCGGTCAGGGGGTAGGGAC  1146

seq1  ATCCTCT-TGTGATTGGGGGAGGTGTAATC  1174
      || |||| || |||||||||||| ||||||
seq2  AT-CTCTCTGGGATTGGGGGAGG-GTAATC  1174