BAC Information

Click to search

BAC

Clone NameB6Ng01-047I12
Chromosome5 (Build37)X (Build37)
Map Location 18,084,511 - 18,084,575130,437,676 - 130,437,813
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSema3c, Cd36, Gnat3, Gnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047I12.bB6Ng01-047I12.g
ACCDH872366DH872367
length976179
definitionDH872366|Mus musculus domesticus DNA, BAC clone: B6Ng01-047I12, 5' end.DH872367|Mus musculus domesticus DNA, BAC clone: B6Ng01-047I12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,084,511 - 18,084,575)(130,437,676 - 130,437,813)
sequence
gaattctcacctgaggaataccgaatggctgagaagcatctaaaaaaatg
ttcaatatcctttgtcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagccagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagctggtacaactctggaaatcaatctggcagttcctcagaa
aattggacatagtactactggatcccgcaatacctctcctgggcatatat
ccagaagatgtcccaaccggtaagaagaacacatgctccactatgttcat
agcagccttatttataatagccagaagctggagaacccagatgtccctca
acagaggaatggatacagaaaatgtggtacatttacacaatggagtacta
ctcagctactaaaaacaatgcatttatgaaatttgtaggcaaatggatgg
atctggagggtatcatcctgagtgaggtaacccaatcacaaaagaactca
cacaatatgtactcactgataagtggatattagcccagaaacttaggata
cccaagatataagatacaatttgctaaacacatgaaactcaagaacgaag
accaaaatgtggacactttgccccttcttagaattgggaacaaaacaccc
atggaaggagttacagagacaaagtttggagctgaaacgaaaggatagac
catcacgagattgccacaccggggaatccatcccataatcagccaccaaa
tgcagacaccagcaagattttgctgaaaggaccctgatatagctgtctct
tgtgaggttatgccagtgcctggcaaacatagaagtggatgctcacaatc
agctattggatggagcatagggccccaatggaggagctagagaaagtacc
cagagctaaagggtctgcaaccctaa
tctgtccacggtgacagtgacatggaaatgaatatggaagagaacaccaa
ttaaaaaaaaaaaaaccctccgaatatttggaaacaaagcatcatggctc
aaaaaaggaagtctcaaaagtctctctctctctctttctctctctctctc
tctctctctctgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_18084511_18084575
seq2: B6Ng01-047I12.b_361_425 (reverse)

seq1  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGTT  50

seq1  CTTCTTACCAGTTGG  65
      ||||||||| |||||
seq2  CTTCTTACCGGTTGG  65

seq1: chrX_130437676_130437813
seq2: B6Ng01-047I12.g_120_250 (reverse)

seq1  ACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAG  50

seq1  AGAGAGAGAGCAT--ATACTCACTTTTCCTAGTCATGATTTTAGATCTTC  98
      |||||||||   |  | |||  |||||   || ||||||       ||| 
seq2  AGAGAGAGACTTTTGAGACTTCCTTTTTTGAGCCATGAT------GCTTT  94

seq1  TGACCCTAACCTGTGCATTCAGGTTTTTTTTTTTTTAATT  138
          || ||  |  | |    |||||||||||||||||||
seq2  GTTTCCAAATATTCGGA---GGGTTTTTTTTTTTTTAATT  131