BAC Information

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BAC

Clone NameB6Ng01-048M14
ChromosomeX (Build37)4 (Build37)
Map Location 90,632,251 - 90,632,64480,723,723 - 80,724,842
singlet/doubletsingletsinglet
Overlap genePola1
Upstream geneMageb18, EG546347, LOC629568, LOC100042663, Rp23-438h3.2, Arx
Downstream geneEG629581, Pcyt1b, Pdk3, EG668103, LOC100042041, AU015836, EG245516, LOC100042062, EG629591, Zfx, Eif2s3x, Klhl15, LOC385495, LOC670263, LOC100042098, LOC631145, 0610008C08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048M14.bB6Ng01-048M14.g
ACCDH873242DH873243
length8711,099
definitionDH873242|Mus musculus domesticus DNA, BAC clone: B6Ng01-048M14, 5' end.DH873243|Mus musculus domesticus DNA, BAC clone: B6Ng01-048M14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(90,632,251 - 90,632,644)(80,723,723 - 80,724,842)
sequence
gaattcactatgtagctatgggtggtctcaaactcacagtcatcctcctg
cctccatctcccatatgctgggattacagaacagttccacaccatgccaa
catcccactgacttttatgtccttatgtacaatccctgctcctattgcat
ctaaaaatccacagaatgtatgtttttagattgataactaaaaagacaga
atgagactcaatagccttgaaagaagagaacgagtctcaatcaaatccct
gaacagtgaggacaagtttatatatattttttccttttgtttttttaatt
gggtatttatttcatttacatttccaatgctatcctaaaagtcccccaca
cactcacccacccactcccacttcttggccctggcattcccctgtactgg
ggcatataaagtttgcgtgtccaatgggcctctctttccagtgacggccg
actaggccatcttttgatacatatgcagctagagtcaagagctccggggt
actggttagttcatattgttgttccacctatagggttgcagttcccttta
gctccttgggtactttctctagctcctccattgggagccctgtgatccat
ccattagctgactgtgggcatccacttctgtgtttgctaggccctggcat
agcctcacaagagacagctatatctgggtccttttcagcaaaatcttgct
tgtgtatgcaatggtgacagtgtttggaagctgattatgggatggatccc
cagatatggcagtctctagatggtccatccttttgtcacagcttcaaact
ttgtctctgtaatccctcccatgggtgtttttttttccccattctaagaa
tggggcaaagtgtcacgtttt
gaattccttatgcttgcctgctctgaaaactatctgtacttcaaaaatat
tataccaaatagcttagtgtatttttaaggaaccaactgtcacaaaaaaa
gaaaggaggaagaaaaagacaaaggaaaaagtattataaatagttcatgg
gctgttaagcatctggaattttaactttataccacaactgggaaagctat
gatttcctagtgtatacaatagaaagaatccaagggaatgaatcacagta
tgaggagtgtaatttctttactgtccatagatgactggatttgcttttaa
tgataaagaaaaaatgcacagctgtttcctctctatgttcagactaaatg
agcacatcaggtctattcaatcctctctgcctttctttcattctctaagg
aaaaagtgacctaaatgagactttttcttgtgcctatgcagggaaagaag
aacatccatgatgcctgtttttaaatagcatttcctgcctctgcatccat
ttcccttagacttatcttcttcccatcttccttcctgtccctatctctcc
ctcctttccccatctctcctccctttccttgggatccaagatttccactg
tcatgctcaaaagtctaacattcccaaaggaaacttttttgctgcctttt
gcctccgtaacttatccattatgccaatcaaacaaaatgtttgttcactt
cctatttaccttgtcccaggataattaatttttatgaattattttgaagg
cctctatagatccagactcctggagataattctctttcccattcattact
gtaattgcacagctttcattctacctgtaagctggtagtgtcagggcccc
tttagctcccaatatatgaagaagcttagcagctcttcagaatcctctga
gaaacatcttgctgttgttacttctctttaacatagtattcactctgaca
tgacaatttgtggagcttttggtgtactacacccaccaccactcacacac
acgccacacattacttattacataaattctcctggtcacaacttgatatc
ctcgaggtctattaagggaaatgttgaaggatctctaggaatcggctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_90632251_90632644
seq2: B6Ng01-048M14.b_402_796 (reverse)

seq1  GGGATCCATCCCATATTCAGCCACCAAACACAGACACTATTGCATAAGAC  50
      ||||||||||||||| |||||  |||||||| | ||| ||||||||    
seq2  GGGATCCATCCCATAATCAGCTTCCAAACACTGTCACCATTGCATACACA  50

seq1  AGCAAGATTTTGCTG-AAAGGACCCTGATATAGCTGTCTCTTGTGAGACT  99
      ||||||||||||||| ||||||||| ||||||||||||||||||||| ||
seq2  AGCAAGATTTTGCTGAAAAGGACCCAGATATAGCTGTCTCTTGTGAGGCT  100

seq1  ATGCTGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGG  149
      ||||  ||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATGCCAGGGCCTAGCAAACACAGAAGTGGATGCCCACAGTCAGCTAATGG  150

seq1  ATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGC  200

seq1  TAAAGGGATCTGCAACCCTATAGATGGAACAACATTATGAACTAAGCAGT  249
      |||||||| |||||||||||||| |||||||||| |||||||||| ||||
seq2  TAAAGGGAACTGCAACCCTATAGGTGGAACAACAATATGAACTAACCAGT  250

seq1  ACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGT  300

seq1  CAGCTATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCC  349
      | ||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCGTCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCC  350

seq1  CCAGTACAGGGGAATGCCAGGGCCAGGAAGTGGGAGTGGGTGGGT  394
      ||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGT  395

seq1: chr4_80723723_80724842
seq2: B6Ng01-048M14.g_69_1167

seq1  GAATTCCTTATGCTTGCCTGCTCTGAAAACTATCTGTACTTCAAAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATGCTTGCCTGCTCTGAAAACTATCTGTACTTCAAAAATAT  50

seq1  TATACCAAATAGCTTAGTGTATTTTTAAGGAACCAACTGTCACAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAAATAGCTTAGTGTATTTTTAAGGAACCAACTGTCACAAAAAAA  100

seq1  GAAAGGAGGAAGAAAAAGACAAAGGAAAAAGTATTATAAATAGTTCATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGGAAGAAAAAGACAAAGGAAAAAGTATTATAAATAGTTCATGG  150

seq1  GCTGTTAAGCATCTGGAATTTTAACTTTATACCACAACTGGGAAAGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAAGCATCTGGAATTTTAACTTTATACCACAACTGGGAAAGCTAT  200

seq1  GATTTCCTAGTGTATACAATAGAAAGAATCCAAGGGAATGAATCACAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTAGTGTATACAATAGAAAGAATCCAAGGGAATGAATCACAGTA  250

seq1  TGAGGAGTGTAATTTCTTTACTGTCCATAGATGACTGGATTTGCTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGTGTAATTTCTTTACTGTCCATAGATGACTGGATTTGCTTTTAA  300

seq1  TGATAAAGAAAAAATGCACAGCTGTTTCCTCTCTATGTTCAGACTAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAGAAAAAATGCACAGCTGTTTCCTCTCTATGTTCAGACTAAATG  350

seq1  AGCACATCAGGTCTATTCAATCCTCTCTGCCTTTCTTTCATTCTCTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATCAGGTCTATTCAATCCTCTCTGCCTTTCTTTCATTCTCTAAGG  400

seq1  AAAAAGTGACCTAAATGAGACTTTTTCTTGTGCCTATGCAGGGAAAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGACCTAAATGAGACTTTTTCTTGTGCCTATGCAGGGAAAGAAG  450

seq1  AACATCCATGATGCCTGTTTTTAAATAGCATTTCCTGCCTCTGCATCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCATGATGCCTGTTTTTAAATAGCATTTCCTGCCTCTGCATCCAT  500

seq1  TTCCCTTAGACTTATCTTCTTCCCATCTTCCTTCCTGTCCCTATCTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTAGACTTATCTTCTTCCCATCTTCCTTCCTGTCCCTATCTCTCC  550

seq1  CTCCTTTCCCCATCTCTCCTCCCTTTCCTTGGGATCCAAGATTTCCACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCCCATCTCTCCTCCCTTTCCTTGGGATCCAAGATTTCCACTG  600

seq1  TCATGCTC-AAAGTCTAACATTCCCAAAGGAAACTTTTTTGCTGCCTTTT  649
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTCAAAAGTCTAACATTCCCAAAGGAAACTTTTTTGCTGCCTTTT  650

seq1  GCCTCCGTAACTTATCCATTATGCCAATCAAACAAAATGTTTGTTCACTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCGTAACTTATCCATTATGCCAATCAAACAAAATGTTTGTTCACTT  700

seq1  CCTATTTACCTTGTCCCAGGATAATTAATTTTTATGAATTATTTTGAAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTACCTTGTCCCAGGATAATTAATTTTTATGAATTATTTTGAAGG  750

seq1  CCTCTATAGATCCAGACTCCTGGAGATAATTCTCTTTCCCATTCATTACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATAGATCCAGACTCCTGGAGATAATTCTCTTTCCCATTCATTACT  800

seq1  GTAATTGCACAGCTTTCATTCTACCTGTAAGCT-GTAGTGTCAGGGCCCC  848
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTAATTGCACAGCTTTCATTCTACCTGTAAGCTGGTAGTGTCAGGGCCCC  850

seq1  -TTAGCTCCCAATATATGAAGAAGCTTAGCAGCTCTTCCAGATCCTCTGG  897
       |||||||||||||||||||||||||||||||||||||   |||||||| 
seq2  TTTAGCTCCCAATATATGAAGAAGCTTAGCAGCTCTTCAGAATCCTCTGA  900

seq1  AGAACATCTTGCTGTTGTTACTTCTCCTTTTACATAGTATTCACTCTGAC  947
        ||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  GAAACATCTTGCTGTTGTTACTTCT-CTTTAACATAGTATTCACTCTGAC  949

seq1  ATGACAAATTTGTGGAGCCTTTTGTTGTTACCTACACACACACACACACA  997
      ||||| ||||||||||| |||||| |||   |||||| |||   ||| ||
seq2  ATGAC-AATTTGTGGAG-CTTTTGGTGT--ACTACACCCAC---CAC-CA  991

seq1  CACACACACACACACACACACCACATTTACTTATTTACATAAAATTCTCA  1047
      | ||||||||| | ||||||      ||||||| |||||| |||||||| 
seq2  CTCACACACACGC-CACACA------TTACTTA-TTACAT-AAATTCTC-  1031

seq1  CTGGTTCTACA-AACTTGATATCTCCGAAGTTCATTATAGGAAAATGTTA  1096
      |||||    || |||||||||||  ||| ||  |||| ||| ||||||| 
seq2  CTGGT----CACAACTTGATATCCTCGAGGTCTATTA-AGGGAAATGTT-  1075

seq1  GATGAATCTCTAGGAATCGTCTTA  1120
      || | |||||||||||||| ||||
seq2  GAAGGATCTCTAGGAATCGGCTTA  1099