BAC Information

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BAC

Clone NameB6Ng01-050M12
ChromosomeX (Build37)
Map Location 72,397,516 - 72,398,516
singlet/doubletsinglet
Overlap gene4930428E23Rik
Upstream geneGm1538, LOC628388, Tktl1, Flna, Emd, LOC100041344, Rpl10, Snora70, Dnase1l1, Taz, B230340J04Rik, Atp6ap1, Gdi1, D0HXS9928E, Plxna3, Lage3, Ubl4, Slc10a3, 1810037C20Rik, G6pdx, Ikbkg, EG628456, LOC628465, LOC100041484, LOC674920, EG245472, Olfr1326-ps1, Olfr1325, EG434797, LOC385383, EG667379, LOC667382, LOC546321, LOC667387, EG628518, Olfr1327-ps1, LOC628637, LOC667413, LOC100041594, LOC627775, EG546325, LOC100041017, EG628573, LOC100041642, LOC667437, EG667446, LOC669291, Gab3, Dkc1, Mpp1, EG547412
Downstream geneEG667190, F8, LOC572559, LOC667218, Fundc2, Mtcp1, Brcc3, LOC667496, Vbp1, Rab39b, EG635243, Pls3, LOC635275, EG635295, LOC667537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050M12.bB6Ng01-050M12.g
ACCDH874624DH874625
length1,0361,166
definitionDH874624|Mus musculus domesticus DNA, BAC clone: B6Ng01-050M12, 5' end.DH874625|Mus musculus domesticus DNA, BAC clone: B6Ng01-050M12, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaatttcaaacaaccacatcgtggttcacaaccatctgtattagg
atccaatgccctcttctggtgtgtctgaaaatagcttcagtgtactcata
taaataaaataaataataaataaatagatcttttttatttttttccattt
ttaattaggtatttagctcatttacatttccaatgctataccaaaagtcc
cccatacccacccacccccactcccctacccacccactccccctttttgg
ccctggcgttcccctgtactggggcatataaagtttgcgtgtccagtggg
cctctctttccagtgatggccgactaggccatcttttgatacatattcag
ctagagtcaagagctccggggtactggttagttcataatgttgttccacc
tatagggttgcagatccctttagctccttggctactttctctagctcctc
cattgggagccctgtgatccatccattagctgactgtgagcatccacttc
tgtgtttgctaggccccggcatagtagatcttttttttttaaaggcaaaa
aaataaaaccatgtcctatatagttccatcataagctcactgagtaagac
acaaaagcaaaaatgactaaaactacacacaatttgtgggggccataact
agccataacataatacaaaatacattcattccaacttccaaagtccccat
agcttatagcagtatcaacaatgttaaaagtccaaagttcaaaatctctt
ctgagactcatatgagcacttaactgtaatcccctaagcaagacaggaag
ccagctgggcaaactccaaactctgcatctccatatctaatgtcaacatg
gacttcagatctccactcttttttcatctttgtgactgcaacaaacttat
ttctctgggctgtccactccctgttagcatctttctcagcagatagcaca
gctctgcatctcgaatactttgggtcttcagcactcatttgcagcttctt
gtacatgtctgatccacatatgatctttggctcctc
gaattctcacctgacgaatactgaatggctgagaagcacctgaaaaagtg
ttcaacatccttaattatcaaggaaatgcacattaaaacaaccctgagat
tccacctcacaccagtcataatgtctaagatcaaaaactcaggtgagagc
agatgctggcgaggatgtggagaaaaagaaacactcttccattgttggtg
ggattgcaagctaatacaagcactctggaaatcagcctggcagttcttca
gaaaattggaaaaaaaacaccaccagaagatccagcaattcctctcctgg
acaaatacccagaagatgtttcaacttgcaataaggacacattctccagt
atgttcatagcagccttatttataacagccagaaactggaaagaacccag
atgtccctcgacagaggaatgaatacagaaaatgtggtacatttacacaa
tggagtactattcagcaattaaaaacaatgaattcctgaaattcttaggc
aaatagatgcatctggaggatatcatcctgagtgaggtaacccaatcata
aaagaacacatatgatatgcactcactgataagcagatattataccagaa
acttagaatatctgagatacaatttgcaaaacacacgaaactcaagaaca
aggaaggacaaagtgtggatagttcagtcattcttagaatggggaactaa
atacccatggaaggagttacagagaccaagttcggagctgacactgaaag
aaagaccatctagagacttccccacctgggaatccatcccatatacaacc
accaaacccaaacactattgcatttgccagaaagattttgctgacaggac
tctgacaaagctctctcttgtgaggctatgccaatgcctggcaaattcaa
agtggatgctcatagtcatctattgattgaacaagggccctatgaggagc
tagagaagtacccagagctaagtgactgcaccctataggggacacatatg
actaaccagtactccagagctggtgtctctagtgcaatgtacagatatga
cctagttggccatcatgggaaagaagtcttgtatatgaagacatatgtct
catcaggatgcaggcagacctggaatgatggttgggaacaggcagggaag
gtataggggcttcggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_72397516_72398516
seq2: B6Ng01-050M12.b_99_1078 (reverse)

seq1  GAGGAGCCCAGAAGATCATATGTGGATCCCAGACATTGTAACAAGAAGCT  50
      ||||||||   ||||||||||||||||  |||||| ||| ||||||||||
seq2  GAGGAGCC--AAAGATCATATGTGGAT--CAGACA-TGT-ACAAGAAGCT  44

seq1  GCAATATTGAAGTTGCCTTGGAGACCCAAAGGTATTCGAGATGGCAGAGC  100
      |||  | |||   |||  || ||||||||| ||||||||||| |||||||
seq2  GCA--AATGA--GTGC--TGAAGACCCAAA-GTATTCGAGAT-GCAGAGC  86

seq1  TGTGGCCTATCTGCTGAGAAAGATGCTAACAGGGAGTGGAACCAGCCCAA  150
      ||||  ||||||||||||||||||||||||||||||||||  |||||| |
seq2  TGTG--CTATCTGCTGAGAAAGATGCTAACAGGGAGTGGA--CAGCCC-A  131

seq1  GAGAAATAAGTTTGTTGCAGTCAACAAAGATGAAAAAAGAGTTGGAGATC  200
      |||||||||||||||||||||| |||||||||||||||||| ||||||||
seq2  GAGAAATAAGTTTGTTGCAGTC-ACAAAGATGAAAAAAGAG-TGGAGATC  179

seq1  TGAAGTCCATGTTGACATTAGATATGGAGATGCAGAGTTTGGAGTTTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCCATGTTGACATTAGATATGGAGATGCAGAGTTTGGAGTTTGCC  229

seq1  CAGCTGGCTTCCTGTCTTGCTTAGGGGATTACAGTTAAGTGCTCATATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCTTCCTGTCTTGCTTAGGGGATTACAGTTAAGTGCTCATATGA  279

seq1  GTCTCAGAAGAGATTTTGAACTTTGGACTTTTAACATTGTTGATACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAAGAGATTTTGAACTTTGGACTTTTAACATTGTTGATACTGCT  329

seq1  ATAAGCTATGGGGACTTTGGAAGTTGGAATGAATGTATTTTGTATTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTATGGGGACTTTGGAAGTTGGAATGAATGTATTTTGTATTATGT  379

seq1  TATGGCTAGTTATGGCCCCCACAAATTGTGTGTAGTTTTAGTCATTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTAGTTATGGCCCCCACAAATTGTGTGTAGTTTTAGTCATTTTTG  429

seq1  CTTTTGTGTCTTACTCAGTGAGCTTATGATGGAACTATATAGGACATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGTCTTACTCAGTGAGCTTATGATGGAACTATATAGGACATGGT  479

seq1  TTTATTTTTTTGCCTTTAAAAAAAAAAGATCTACTATGCCGGGGCCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTTGCCTTTAAAAAAAAAAGATCTACTATGCCGGGGCCTAGC  529

seq1  AAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCACAGGGCT  579

seq1  CCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGGAGGAGCTAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAA  629

seq1  CCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTG  679

seq1  ACTCTAGCTGAATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGCTGAATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAA  729

seq1  AGAGAGGCCCACTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCCCACTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAAC  779

seq1  GCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGG  829

seq1  GTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACC  879

seq1  TAATTAAAAATGGAAAAAAATAAAAAAGATCTATTTATTTATTATTTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAAAATGGAAAAAAATAAAAAAGATCTATTTATTTATTATTTATT  929

seq1  TTATTTATATGAGTACACTGAAGCTATTTTCAGACACACCAGAAGAGGGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATATGAGTACACTGAAGCTATTTTCAGACACACCAGAAGAGGGC  979

seq1  A  1001
      |
seq2  A  980