BAC Information

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BAC

Clone NameB6Ng01-052M08
ChromosomeX (Build37)
Map Location 87,433,063 - 87,472,463
singlet/doubletdoublet
Overlap geneGm370
Upstream geneLOC667934, Pet2, EG629419, 4932429P05Rik, LOC633246, Nanog-ps1, 4930415L06Rik, EG547215
Downstream geneLOC194615, LOC629471, LOC100041815, Gm44, LOC670074
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052M08.bB6Ng01-052M08.g
ACCDH876025DH876026
length557289
definitionDH876025|Mus musculus domesticus DNA, BAC clone: B6Ng01-052M08, 5' end.DH876026|Mus musculus domesticus DNA, BAC clone: B6Ng01-052M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,471,911 - 87,472,463)(87,433,063 - 87,433,351)
sequence
gaattctcagctgagtgcttagctatgtagaaatctgaagtaaaatagac
tgtaattttaatcacaaaagttacctttgtcataacctctttatttctta
cgttactactatgattagggtctataaaaatttactatgtacagattgag
tgcataaaaatctattatatgtgtcaacctgtatgatggagtcttcaacc
cttttaggtctctgatcatccagttaaattctctactattagtatctgtt
gtaaaatgttattctcatgtacctcagagtattctttttctttctttctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctttcttcctttcgttctttcgttctttcgttctttcgttctttctt
tctttctttctttcttcctttcttcctttcttcctttcttcctttcttcc
tttcttccttccttctttccttccttccttccttccttctttccttcctt
ccttccttccttccttccttcctgctttcttatgttcttgctttctgttt
tgtttga
tttaaatagagattaaagttagtattggggggtggggtggacagagggga
gagagagagatcaaatgtagttagaaatataatattaattttaagtccag
agatcttcctgttgtatgcacttaattagatatatgatttaaaaatttct
agttatttggataattttgattcctcaactactgaaaaatataatagagt
actacgttccaaattttcctcttctagctatgaaatagaattatttcaag
acccaacaattgtgcctcaaatgaggccctctgagagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_87471911_87472463
seq2: B6Ng01-052M08.b_43_599 (reverse)

seq1  TCAAACAAAACAGAAAGCAAGAACATAAGAAAGCAGGAAGGAAGGAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAAACAGAAAGCAAGAACATAAGAAAGCAGGAAGGAAGGAAGGA  50

seq1  AGGAAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGGAAAGAAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAAGAAGGAAGGAAGGAAGGAAGGAAAGAAGGAAG  100

seq1  GAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGGAAGAAAGAA  150

seq1  AGAAAGAAAGAAAGAACGAAAGAACGAAAGAACGAAAGAACGAAAGG---  197
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AGAAAGAAAGAAAGAACGAAAGAACGAAAGAACGAAAGAACGAAAGGAAG  200

seq1  -AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  246
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  250

seq1  AGAAAGAAAGAAAGAAAGAAAAAGAATACTCTGAGGTACATGAGAATAAC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAAAGAATACTCTGAGGTACATGAGAATAAC  300

seq1  ATTTTACAACAGATACTAATAGTAGAGAATTTAACTGGATGATCAGAGAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACAACAGATACTAATAGTAGAGAATTTAACTGGATGATCAGAGAC  350

seq1  CTAAAAGGGTTGAAGACTCCATCATACAGGTTGACACATATAATAGATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGGGTTGAAGACTCCATCATACAGGTTGACACATATAATAGATTT  400

seq1  TTATGCACTCAATCTGTACATAGTAAATTTTTATAGACCCTAATCATAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACTCAATCTGTACATAGTAAATTTTTATAGACCCTAATCATAGT  450

seq1  AGTAACGTAAGAAATAAAGAGGTTATGACAAAGGTAACTTTTGTGATTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACGTAAGAAATAAAGAGGTTATGACAAAGGTAACTTTTGTGATTAA  500

seq1  AATTACAGTCTATTTTACTTCAGATTTCTACATAGCTAAGCACTCAGCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGTCTATTTTACTTCAGATTTCTACATAGCTAAGCACTCAGCTG  550

seq1  AGAATTC  553
      |||||||
seq2  AGAATTC  557

seq1: chrX_87433063_87433351
seq2: B6Ng01-052M08.g_76_364

seq1  TTTAAATAGAGATTAAAGTTAGTATTGGGGGGTGGGGTGGACAGAGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAGAGATTAAAGTTAGTATTGGGGGGTGGGGTGGACAGAGGGGA  50

seq1  GAGAGAGAGATCAAATGTAGTTAGAAATATAATATTAATTTTAAGTCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGATCAAATGTAGTTAGAAATATAATATTAATTTTAAGTCCAG  100

seq1  AGATCTTCCTGTTGTATGCACTTAATTAGATATATGATTTAAAAGTTTCT  150
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGATCTTCCTGTTGTATGCACTTAATTAGATATATGATTTAAAAATTTCT  150

seq1  AGTTATTTGGATAATTTTGATTCCTCAACTACTGAAAAATATAATAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTGGATAATTTTGATTCCTCAACTACTGAAAAATATAATAGAGT  200

seq1  ACTACGTTCCAAATTTTCCTCTTCTAGCTATGAAATAGAATTATTTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACGTTCCAAATTTTCCTCTTCTAGCTATGAAATAGAATTATTTCAAG  250

seq1  ACCCAACAATTGTGCCTCAAATGAGGCCCTCTGAGAGCT  289
      |||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACAATTGTGCCTCAAATGAGGCCCTCTGAGAGCT  289