BAC Information

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BAC

Clone NameB6Ng01-053C05
ChromosomeX (Build37)10 (Build37)
Map Location 11,152,581 - 11,153,07637,592,248 - 37,593,291
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTspan7, EG546265, LOC633354, LOC633361, LOC100042912, Mid1ip1, LOC668982, Ppia-psx_105.1, LOC100042922, LOC100042927, LOC100042929, LOC100042931, OTTMUSG00000016790, LOC100042939, LOC100042943, LOC100042944, LOC100042946, EG236663, 8430439B09Rik
Downstream geneLOC669520, Rpl23a-ps, LOC100043945, Bcor, 2900008C10Rik, LOC385323, LOC100043946, LOC628441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053C05.bB6Ng01-053C05.g
ACCDH876272DH876273
length1,0411,035
definitionDH876272|Mus musculus domesticus DNA, BAC clone: B6Ng01-053C05, 5' end.DH876273|Mus musculus domesticus DNA, BAC clone: B6Ng01-053C05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(11,152,581 - 11,153,076)(37,592,248 - 37,593,291)
sequence
gaattctactgaacatctaagaagggaatcattccaatttccaataatat
ttctcagaacaaagaaatgaaggaaatacattagaccaaattaaataaga
ccaccattacaccgatgtcaacttgagacaaagatccaagggaaaagtgt
tgctcatgaatgtaaatgcaaatagtttcaacaaagtgtggataaatcaa
attttaaaatgtacaaaatgattataaaatctactacataggattaattg
agatatgacaaattgctttaacatttgaaaattgatatgatttataacag
taataggatctaagttaaattaggatattaagaccatgtcaatggatgca
agaaaattatttaaaaaatatccagtgcccatctatgataaccctccctg
taaattaggaatcaagtcagtagataaaggatatctacaaaaagcttcat
tgtgcctggtgtggtgacacacgcctttaatccgagcactcaggaggcag
aggcaggcggatttctgagttcgaggccagcctggtctacagagtgagtt
ccaggacagccagggccatacagagaaaccctgtctctaagagaaaaaaa
caaacaaacaaacaaacaaacaagcttcattgtagtaaataataaataac
tagatgtctctttaaaagattcggagtaggcagagatgttttttctgtcc
atgcttcttcctattagaagtcctaggtcattcaaatgacacatgtaagc
atagtatatgccgactgtcaaactgaaaacaacatcagcctagagagata
attcagacatgcttgctatacaagcataaggctatccatgaaaaagccat
gccttagggtccacactaatgatcccagaagagggaaaacagagacaggt
taatccctgggactcactggcagccatctttgcctaatcacttctagatc
cagtgaaagaccactgtgtctcaaaaacaaacagaaattaaacagcacga
ctgggctccttagaattatgcacaaggtgattctgcactac
gaattccagagaggatatggatgctgcttagagcagcttggcctaccaga
gaggactcagtaagcatgaaaggacaaggtacatattcttacacaaaagg
gggatatattaattaagtcagctattaaacattatttaatctctacatat
tgtagatcaatatttcaggtaggaataaattccaagaagataattatgac
attgtttttatagcttgctcttgctggtgaactcctgtctcagccattga
tttggtctttgaaaattggggtttagggttttgaataaagtcagatagtt
tcagaaagctaaagcaatggtcacagtgagtttgtctttatagaagaaac
tgtttttaaaattttccttgacataaaattgctgtatgatttttctagtt
aaatatttgttggatctgttattctaagcattattgttatttaaacaatg
aacacctttttaaaaagtgtgtaaaatattaaattagatgcatttgatcg
aaaggaaatacaaggcaaacatcaggatgggagtatttttttatatgaat
ggaaatgatcacccaggttttccagtttgatttctcattaaatttctgac
atttttgcacactgtgtcccaattctccgacattctcctgaatgaaaaat
gatagagcacacttaatgatttgattatagcctagaattatatctgatct
gtcaagataaatgttaacactgatagagtgtttatggatttgcaggcagt
atttaatttttagaaagaaatgttttatcaaaattattaatcatttatta
ttgccaacttagctgtgtggcaggtttcattacacagcagtaaaagaggt
tgcatataaactctttgcagactgtcacacaacaccccaaagcattatga
agaggaagagtttgatctagtttccacaaagattctaccatccttagtta
tacaagaaaatttttttaacctggagagaaggaatttgcaaatattctac
ctggctaaaaatgacttcaaggggactacatggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_11152581_11153076
seq2: B6Ng01-053C05.b_503_796

seq1  GGTGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGG  50
      ||||||||| |||||||||||||||| ||||||  |||||||||||||||
seq2  GGTGTGGTGACACACGCCTTTAATCCGAGCACTCAGGAGGCAGAGGCAGG  50

seq1  CAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACATAGTGAGTTCCAGGAC  100
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGAC  100

seq1  AGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAATAAGGAAA  150
      ||||||||| ||||||||||||||||||||            ||||  ||
seq2  AGCCAGGGCCATACAGAGAAACCCTGTCTC------------TAAGAGAA  138

seq1  AAAAAGAAAGAAAGAAAGAAAGAAAGAA--AGAAAGAAAGAAAGAAAGAA  198
      ||||| ||| ||| ||| ||| ||| ||     |    || ||  || ||
seq2  AAAAACAAACAAACAAACAAACAAACAAGCTTCATTGTAGTAAATAATAA  188

seq1  AGAAATAGA------ATGAAAACAATCCTGAAAGAGAAAG-GATGGTTGA  241
      | || ||||       | |||| | ||  | |  ||  || |||| ||  
seq2  ATAACTAGATGTCTCTTTAAAAGATTC--GGAGTAGGCAGAGATGTTTTT  236

seq1  T-TGT-AGTGTGTGACCCTAGAACCAGGC--ATGGCATCCTGAATGCCAA  287
      | |||   ||  |   ||||  |  || |  | | ||| |  ||||  | 
seq2  TCTGTCCATGCTTCTTCCTATTAGAAGTCCTAGGTCATTC-AAATG--AC  283

seq1  ACCAGCCAGCAGCCAACAGAACAGCTTGCCTGGCAAGCTCAACCACAAAT  337
      ||  |  ||||                                       
seq2  ACATGTAAGCA---------------------------------------  294

seq1  TGAAATCTGCCTATCTTCCACACGTCCAGACCCAGAACTGAGCACGCCTA  387
                                                        
seq2  --------------------------------------------------  294

seq1  AGTCCTCATAACGCATGCTCCACATAAACCTGAACTGCAAACACACATAC  437
                                                        
seq2  --------------------------------------------------  294

seq1  ATGGCCATGAACAGCGCACAGTACTCAAGTAAAACACGTATTTATGACAC  487
                                                        
seq2  --------------------------------------------------  294

seq1  ATGTAAGCA  496
               
seq2  ---------  294

seq1: chr10_37592248_37593291
seq2: B6Ng01-053C05.g_71_1105

seq1  GAATTCCAGAGAGGATATGGATGCTGCTTAGAGCAGCTTGGCCTACCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGAGGATATGGATGCTGCTTAGAGCAGCTTGGCCTACCAGA  50

seq1  GAGGACTCAGTAAGCATGAAAGGACAAGGTACATATTCTTACACAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTCAGTAAGCATGAAAGGACAAGGTACATATTCTTACACAAAAGG  100

seq1  GGGATATATTAATTAAGTCAGCTATTAAACATTATTTAATCTCTACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATATATTAATTAAGTCAGCTATTAAACATTATTTAATCTCTACATAT  150

seq1  TGTAGATCAATATTTCAGGTAGGAATAAATTCCAAGAAGATAATTATGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATCAATATTTCAGGTAGGAATAAATTCCAAGAAGATAATTATGAC  200

seq1  ATTGTTTTTATAGCTTGCTCTTGCTGGTGAACTCCTGTCTCAGCCATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTTATAGCTTGCTCTTGCTGGTGAACTCCTGTCTCAGCCATTGA  250

seq1  TTTGGTCTTTGAAAATTGGGGTTTAGGGTTTTGAATAAAGTCAGATAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCTTTGAAAATTGGGGTTTAGGGTTTTGAATAAAGTCAGATAGTT  300

seq1  TCAGAAAGCTAAAGCAATGGTCACAGTGAGTTTGTCTTTATAGAAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGCTAAAGCAATGGTCACAGTGAGTTTGTCTTTATAGAAGAAAC  350

seq1  TGTTTTTAAAATTTTCCTTGACATAAAATTGCTGTATGATTTTTCTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAAATTTTCCTTGACATAAAATTGCTGTATGATTTTTCTAGTT  400

seq1  AAATATTTGTTGGATCTGTTATTCTAAGCATTATTGTTATTTAAACAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGTTGGATCTGTTATTCTAAGCATTATTGTTATTTAAACAATG  450

seq1  AACACCTTTTTAAAAAGTGTGTAAAATATTAAATTAGATGCATTTGATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCTTTTTAAAAAGTGTGTAAAATATTAAATTAGATGCATTTGATCG  500

seq1  AAAGGAAATACAAGGCAAACATCAGGATGGGAGTATTTTTTTATATGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATACAAGGCAAACATCAGGATGGGAGTATTTTTTTATATGAAT  550

seq1  GGAAATGATCACCCAGGTTTTCCAGTTTGATTTCTCATTAAATTTCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGATCACCCAGGTTTTCCAGTTTGATTTCTCATTAAATTTCTGAC  600

seq1  ATTTTTGCACACTGTGTCCCAATTCTCCGACATTCTCCTGAATGAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCACACTGTGTCCCAATTCTCCGACATTCTCCTGAATGAAAAAT  650

seq1  GATAGAGCACACTTAATGATTTGATTATAGCCTAGAATTATATCTGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGCACACTTAATGATTTGATTATAGCCTAGAATTATATCTGATCT  700

seq1  GTCAAGATAAATGTTAACACTGATAGAGTGTTTATGGATTTGCAGGCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGATAAATGTTAACACTGATAGAGTGTTTATGGATTTGCAGGCAGT  750

seq1  ATTTAATTTTTAGAAAGAAATGTTTTATCAAAATTATTAATCATTTATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTTTTAGAAAGAAATGTTTTATCAAAATTATTAATCATTTATTA  800

seq1  TTGCCAACTTAGCTGTGTGGCAGGTTTCATTACACAGCAGTAAAAGAGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAACTTAGCTGTGTGGCAGGTTTCATTACACAGCAGTAAAAGAGGT  850

seq1  TGCATATAAACTCTTTGCAGACTGTCACACAACA-CCCAAAGCATTATGA  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGCATATAAACTCTTTGCAGACTGTCACACAACACCCCAAAGCATTATGA  900

seq1  AGAGGAAGAGTTTTGATCTAGTTTCCACAAAGATTCATACCATCCTTAGT  949
      |||||||||| ||||||||||||||||||||||||| |||||||||||| 
seq2  AGAGGAAGAG-TTTGATCTAGTTTCCACAAAGATTC-TACCATCCTTAG-  947

seq1  TTTATACAATGAAAATTTTTTTTAACCTGGAGAGAAAGGAATTTGCAAAT  999
       |||||||| ||||| |||||||||||||||||| |||||||||||||||
seq2  -TTATACAA-GAAAA-TTTTTTTAACCTGGAGAG-AAGGAATTTGCAAAT  993

seq1  ATATCTACACTGCTAAAAAATGAACTTCAAGGGGACTACATGTTT  1044
      || ||||| |||   ||||||| ||||||||||||||||||| ||
seq2  AT-TCTAC-CTGGCTAAAAATG-ACTTCAAGGGGACTACATGGTT  1035