BAC Information

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BAC

Clone NameB6Ng01-053I01
ChromosomeX (Build37)
Map Location 65,244,529 - 65,398,919
singlet/doubletdoublet
Overlap geneLOC100040194
Upstream geneEG666828, Gm1140, LOC666842, LOC619873, 4933436I01Rik
Downstream geneEG236844, LOC385372, LOC627888, LOC434788, Fmr1, Fmr1nb, LOC100040244, EG627927, LOC666882, LOC671950, LOC100040255
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053I01.bB6Ng01-053I01.g
ACCDH876533DH876534
length1,080773
definitionDH876533|Mus musculus domesticus DNA, BAC clone: B6Ng01-053I01, 5' end.DH876534|Mus musculus domesticus DNA, BAC clone: B6Ng01-053I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,397,839 - 65,398,919)(65,244,529 - 65,245,301)
sequence
gaattcatagttcttgtctgctctaatcaatgctgcattcccagtgtgta
aaattgtgcatggaatatttcatgtaatattctagatgttatagattaac
tcagtcatcaaagtgacaaaatgaatcattggtaattttgaaagatagat
gagttgtttaatggtataactatattatatacaatcccagtaaacttctt
taatatgcatttaattactttcaatgaattgcttatgttcatctacctat
tttactgaagaatttgacattacaaggaaaagctcagataaacttaaaac
aaatgtttaataagtaaacagaaaagcaaaattcagccaacataaacttg
aatgtcacatttggctgttaatgcagacaatgaggggaaagttaatttgt
ctcttttatagtgaatatactgacactaagtgggaaagtttatttaaaaa
tcccaagtgataaaaatcaagcatagcaatgtgttagaggaatacatttc
aactacagaaaccataatatgaatgcctttatagaaatgatattcaccag
tatattgagtactgtccttgatcatagctttaagaatattctgagaaatt
cttcaaatgattgtttctgatatattagtccatgagaaaaacccaaacca
agttttataaataacagaatgaaagtgcttctaaagggtttgtgattata
tgatttcacataagaacacaagttgttgaatttcaactaatgaagatcag
tttaattatggattgagtcttccaacatcaataatcattctttgctgttg
aaactgtaacaatccactttaaacccatcaaaatagaaatgtgcaaattg
cctggagggcatcattcctgagtgaggtcacccaattcacaaaggaactc
acacatatgtactcactgataagtggatatagcccagaaactaggatacc
caggatgataagatacaatttgctaacacatgaacttcaggaagaacgaa
gaccaaagtgtggaacctttgcccctcttagaaatgggaaacaaaacccc
atgggaaggattacagagacaaattggagc
gaattcatacttttggtttaaaaggaaagcaaagagggaaagtaatacat
tgatcaatatttttgtaagcttttggaattttgtacttaattatcctcta
ctggtagtaaaaatcttaaaatgaacaaggtgagccatttgggaattact
acagttttgaatggacgttggaatggctgatatttgcattgcatatgctt
ttcagttttattttctaattataataattatgaactcagccttctattag
cagtacacaatgtgtttctatttccttttatatacagtgtactttgacca
tttacatttaggatggccataacctgtttacaacaactattcacttcatt
ttacatttgtgcttttggctctctttctgttatttctttactcttccttt
cctatgcattgttgaatatgttctattactttacctttatttaaacatgc
ttatctatttgtataattattatacatattttaaattgaaaagttataaa
tatgtagcttatcacagtctatcagtgttaatattttaccagttacattg
aagtaagtaacaagcaactatttaaattcatttatcatttctactttcca
atattattgttgtttgatgcttttatatttcttgttaaattatctactat
tttgtctaagccttcgaggatgtttactgtcttatctaagtacatgtata
gaggtatgcatgtataaaatctattttttgctctttctctatttttttct
tttttttcctaatgctatgcgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_65397839_65398919
seq2: B6Ng01-053I01.b_46_1125 (reverse)

seq1  GCTCCAAATTTTGTCTCTGTAACTCCTT-CCATGGGTGTTTTG-TTCCCA  48
      |||||||  ||||||||||||| ||||| ||||||| |||||| ||||||
seq2  GCTCCAA--TTTGTCTCTGTAA-TCCTTCCCATGGG-GTTTTGTTTCCCA  46

seq1  TTTCTAAGAAGGGGCAAAGTGTCCACACTTTGGTCTTCGTTCTTCTTGAG  98
      |||||||| ||||||||||  |||||||||||||||||||||||| ||| 
seq2  TTTCTAAG-AGGGGCAAAGGTTCCACACTTTGGTCTTCGTTCTTCCTGAA  95

seq1  TTTCATGTGTTTAGCAAATTGTATCTTAT-ATCTTGGGTATCCTAAGTTT  147
       |||||||| ||||||||||||||||||| ||| |||||||||| |||||
seq2  GTTCATGTG-TTAGCAAATTGTATCTTATCATCCTGGGTATCCT-AGTTT  143

seq1  CTGGGCTAATATCCACTTATCAGTGAGTACATATTGTGTGAGTTCCTTTG  197
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGGGCT-ATATCCACTTATCAGTGAGTACATA-TGTGTGAGTTCCTTTG  191

seq1  TG-ATTGGGTGACCTCACTCAGG-ATGATGCCCTCCAGGC-ATTTGCACA  244
      || |||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TGAATTGGGTGACCTCACTCAGGAATGATGCCCTCCAGGCAATTTGCACA  241

seq1  TTTCTATTTTGAT-GGTTTAAAGTGGATTGTTACAGTTTCAACAGC-AAG  292
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  TTTCTATTTTGATGGGTTTAAAGTGGATTGTTACAGTTTCAACAGCAAAG  291

seq1  AATGATTATTGATGTTGGAAGACTCAATCCATAATTAAACTGATCTTCAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTATTGATGTTGGAAGACTCAATCCATAATTAAACTGATCTTCAT  341

seq1  TAGTTGAAATTCAACAACTTGTGTTCTTATGTGAAATCATATAATCACAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAAATTCAACAACTTGTGTTCTTATGTGAAATCATATAATCACAA  391

seq1  ACCCTTTAGAAGCACTTTCATTCTGTTATTTATAAAACTTGGTTTGGGTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTAGAAGCACTTTCATTCTGTTATTTATAAAACTTGGTTTGGGTT  441

seq1  TTTCTCATGGACTAATATATCAGAAACAATCATTTGAAGAATTTCTCAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATGGACTAATATATCAGAAACAATCATTTGAAGAATTTCTCAGA  491

seq1  ATATTCTTAAAGCTATGATCAAGGACAGTACTCAATATACTGGTGAATAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTAAAGCTATGATCAAGGACAGTACTCAATATACTGGTGAATAT  541

seq1  CATTTCTATAAAGGCATTCATATTATGGTTTCTGTAGTTGAAATGTATTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTATAAAGGCATTCATATTATGGTTTCTGTAGTTGAAATGTATTC  591

seq1  CTCTAACACATTGCTATGCTTGATTTTTATCACTTGGGATTTTTAAATAA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACACATTGCTATGCTTGATTTTTATCACTTGGGATTTTTAAATAA  641

seq1  ACTTTCCCACTTAGTGTCAGTATATTCACTATAAAAGAGACAAATTAACT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCACTTAGTGTCAGTATATTCACTATAAAAGAGACAAATTAACT  691

seq1  TTCCCCTCATTGTCTGCATTAACAGCCAAATGTGACATTCAAGTTTATGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTCATTGTCTGCATTAACAGCCAAATGTGACATTCAAGTTTATGT  741

seq1  TGGCTGAATTTTGCTTTTCTGTTTACTTATTAAACATTTGTTTTAAGTTT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAATTTTGCTTTTCTGTTTACTTATTAAACATTTGTTTTAAGTTT  791

seq1  ATCTGAGCTTTTCCTTGTAATGTCAAATTCTTCAGTAAAATAGGTAGATG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGCTTTTCCTTGTAATGTCAAATTCTTCAGTAAAATAGGTAGATG  841

seq1  AACATAAGCAATTCATTGAAAGTAATTAAATGCATATTAAAGAAGTTTAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGCAATTCATTGAAAGTAATTAAATGCATATTAAAGAAGTTTAC  891

seq1  TGGGATTGTATATAATATAGTTATACCATTAAACAACTCATCTATCTTTC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGTATATAATATAGTTATACCATTAAACAACTCATCTATCTTTC  941

seq1  AAAATTACCAATGATTCATTTTGTCACTTTGATGACTGAGTTAATCTATA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACCAATGATTCATTTTGTCACTTTGATGACTGAGTTAATCTATA  991

seq1  ACATCTAGAATATTACATGAAATATTCCATGCACAATTTTACACACTGGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAGAATATTACATGAAATATTCCATGCACAATTTTACACACTGGG  1041

seq1  AATGCAGCATTGATTAGAGCAGACAAGAACTATGAATTC  1081
      |||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGCATTGATTAGAGCAGACAAGAACTATGAATTC  1080

seq1: chrX_65244529_65245301
seq2: B6Ng01-053I01.g_72_844

seq1  GAATTCATACTTTTGGTTTAAAAGGAAAGCAAAGAGGGAAAGTAATACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTTTTGGTTTAAAAGGAAAGCAAAGAGGGAAAGTAATACAT  50

seq1  TGATCAATATTTTTGTAAGCTTTTGGAATTTTGTACTTAATTATCCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAATATTTTTGTAAGCTTTTGGAATTTTGTACTTAATTATCCTCTA  100

seq1  CTGGTAGTAAAAATCTTAAAATGAACAAGGTGAGCCATTTGGGAATTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGTAAAAATCTTAAAATGAACAAGGTGAGCCATTTGGGAATTACT  150

seq1  ACAGTTTTGAATGGACGTTGGAATGGCTGATATTTGCATTGCATATGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTGAATGGACGTTGGAATGGCTGATATTTGCATTGCATATGCTT  200

seq1  TTCAGTTTTATTTTCTAATTATAATAATTATGAACTCAGCCTTCTATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTTATTTTCTAATTATAATAATTATGAACTCAGCCTTCTATTAG  250

seq1  CAGTACACAATGTGTTTCTATTTCCTTTTATATACAGTGTACTTTGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACACAATGTGTTTCTATTTCCTTTTATATACAGTGTACTTTGACCA  300

seq1  TTTACATTTAGGATGGCCATAACCTGTTTACAACAACTATTCACTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATTTAGGATGGCCATAACCTGTTTACAACAACTATTCACTTCATT  350

seq1  TTACATTTGTGCTTTTGGCTCTCTTTCTGTTATTTCTTTACTCTTCCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTGTGCTTTTGGCTCTCTTTCTGTTATTTCTTTACTCTTCCTTT  400

seq1  CCTATGCATTGTTGAATATGTTCTATTACTTTACCTTTATTTAAACATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCATTGTTGAATATGTTCTATTACTTTACCTTTATTTAAACATGC  450

seq1  TTATCTATTTGTATAATTATTATACATATTTTAAATTGAAAAGTTATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATTTGTATAATTATTATACATATTTTAAATTGAAAAGTTATAAA  500

seq1  TATGTAGCTTATCACAGTCTATCAGTGTTAATATTTTACCAGTTACATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCTTATCACAGTCTATCAGTGTTAATATTTTACCAGTTACATTG  550

seq1  AAGTAAGTAACAAGCAACTATTTAAATTCATTTATCATTTCTACTTTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGTAACAAGCAACTATTTAAATTCATTTATCATTTCTACTTTCCA  600

seq1  ATATTATTGTTGTTTGATGCTTTTATATTTCTTGTTAAATTATCTACTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATTGTTGTTTGATGCTTTTATATTTCTTGTTAAATTATCTACTAT  650

seq1  TTTGTCTAAGCCTTCGAGGATGTTTACTGTCTTATCTAAGTACATGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTAAGCCTTCGAGGATGTTTACTGTCTTATCTAAGTACATGTATA  700

seq1  GAGGTATGCATGTATAAAATCTA-TTTTTGCTCTTTCTCTATTTTTTCTT  749
      ||||||||||||||||||||||| |||||||||||||||||||||||  |
seq2  GAGGTATGCATGTATAAAATCTATTTTTTGCTCTTTCTCTATTTTTTTCT  750

seq1  TTTTTTTCCTAATGCTATAGCGTC  773
      |||||||||||||||||| |||||
seq2  TTTTTTTCCTAATGCTAT-GCGTC  773