BAC Information

Click to search

BAC

Clone NameB6Ng01-054F08
ChromosomeX (Build37)
Map Location 160,232,973 - 160,374,758
singlet/doubletdoublet
Overlap geneAp1s2, Zrsr2
Upstream gene4932441K18Rik, LOC671250, Syap1, LOC100041607, Ctps2, S100g, LOC100040610, EG637051, Grpr, 1700045I19Rik
Downstream geneCar5b, Siah1b, Tmem27, Ace2, Bmx, Pir, Figf, Piga, Asb11, Asb9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054F08.bB6Ng01-054F08.g
ACCDH877103DH877104
length1,1211,182
definitionDH877103|Mus musculus domesticus DNA, BAC clone: B6Ng01-054F08, 5' end.DH877104|Mus musculus domesticus DNA, BAC clone: B6Ng01-054F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(160,232,973 - 160,234,107)(160,373,565 - 160,374,758)
sequence
gaattcttagggataggacaataatatgacatgttctttaccagaaagcc
tcctgtgctcaggagtaattatataaccttctagagagttcagaaagtca
tgtatatacccacaaccagagattcaacttaatcccattattctgatcaa
aatgtatgaaacagggcagattaaaaaagaaaaatgaatagctgggtatg
gtggctcacacctttactctcaaccctgggaagacagagacagacaaatt
tctgaagtctcaggccaacctggactatatagcaagttcctggcaaacca
gggatgcacaggagacccccgtctcaaaaactgaaaagtagtctcagtca
tatgtgatctgaaaagttggatctggagatatggcttagcctatactgct
cttgcagaggtcctgagttcagttcttagcactcacaaaaggcaactcat
acttaccttcctcaagcacctgaacccaagtgtgcaaatggacaaacaca
cacacacaattcaaaattattgaaatttaaataaaagaaaaacgagccta
agtcccctaagatgactcagcggataaaggctcctgccactaaacctaac
aaccagagttcaatccccagagcccacatgatagaaagagcgaagggatt
agcataaattgttctttgacatccatgacacatacaaatatatgcaaaca
catacacacgtgtacacatgtgcacaacaataagagcacaaagattattc
acagcacaaccacaccatagcttgctcccataccctttcaaaatgcatac
tgcctacaagactggagagcatacctcatgtcgaccagatttacctaccc
aaattctagagggacctcactctcatgagaactataggtaaagtaggccc
ctcatgttccaacatattaagccctgtgtcaagccccactaaccatagat
cctaaataaaacacaaatccaaacagcagagaagctatacttcaaagtcc
agctggaccaactgacaccacacaacaagctcacaccctagacaaactat
tgagagagctcaactgagctatcatattaagaaattaaatcagctcagaa
aagacagtatccttgtttttc
gaattcagagaggagggaaagggccagtcactatgatgaatactatggca
ggtcaaggaggaggaggaggagcccgagtcccgacttctacaagagaaat
ggcgagtctgacaggaagagcagtagcagacacagggtgaagaaatctca
cagatatggaatgaagagtcgtgagaggcgcagttcacccagtagaagaa
gaaaggaccacagtccgggcccctggagccagagcaggaggagccaccgc
agcaggagtcgcagtcgcagccgcagccgcagccgcagtcggacccgtag
ccgaagccggggccggggccggagcaggagccggagccggagcaggagca
ggggccggagcaggagcaggggccggggcagcggcaggggcaggggcagg
ggcaggggcaggggcaggaaccagagcaggagttggagtcaaagccggag
ccggagtagtagctcgtcaaggtccagaagtcgtggcaggaggtcaggta
gtagagacaaaaccacccagagtcccaaatctaaataaacttggttgttt
ttaaatatgtctgtctttttatagcagctactcacctgtatagatagatg
atgctagctaatgctatcatgtaaaatcatacttttttgagaaattatac
acacacacacacacacacacacacacacacacatgaaattacttgtaata
ataacctcgagagcatcagtttaatgctggagtgatgctttactattttt
tcctgttttctgcctgtgcacctctccccctccctccatctctcctttcc
tcctctttccctcctccctcttcctcttcctcttcctctctgtctctctg
tgtatgtgtgtgcatatgtgtgttcagaggacaaattttaggggttattt
tatccaatgtgatccaggaattgaaccgaggtgaagcttttacaccaaag
gactcttttactcacgggagcatcttctcagcctggtttttttttttgta
ggggtcaacaacctttaattctgcttattgtatttgggtgtttggctgca
agtactatgtgcaacatggagccatgtgccggggaggcaaaagaatgtcg
aatcgccttgacgaaattaaaatgatggaaatgtaatgggtctgaaatga
acccagatccctcaaaaagtacacttaccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_160232973_160234107
seq2: B6Ng01-054F08.b_48_1168

seq1  GAATTCTTAGGGATAGGACAATAATATGACATGTTCTTTACCAGAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGGATAGGACAATAATATGACATGTTCTTTACCAGAAAGCC  50

seq1  TCCTGTGCTCAGGAGTAATTATATAACCTTCTAGAGAGTTCAGAAAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGCTCAGGAGTAATTATATAACCTTCTAGAGAGTTCAGAAAGTCA  100

seq1  TGTATATACCCACAACCAGAGATTCAACTTAATCCCATTATTCTGATCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATACCCACAACCAGAGATTCAACTTAATCCCATTATTCTGATCAA  150

seq1  AATGTATGAAACAGGGCAGATTAAAAAAGAAAAATGAATAGCTGGGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATGAAACAGGGCAGATTAAAAAAGAAAAATGAATAGCTGGGTATG  200

seq1  GTGGCTCACACCTTTACTCTCAACCCTGGGAAGACAGAGACAGACAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCACACCTTTACTCTCAACCCTGGGAAGACAGAGACAGACAAATT  250

seq1  TCTGAAGTCTCAGGCCAACCTGGACTATATAGCAAGTTCCTGGCAAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTCTCAGGCCAACCTGGACTATATAGCAAGTTCCTGGCAAACCA  300

seq1  GGGATGCACAGGAGACCCCCGTCTCAAAAACTGAAAAGTAGTCTCAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCACAGGAGACCCCCGTCTCAAAAACTGAAAAGTAGTCTCAGTCA  350

seq1  TATGTGATCTGAAAAGTTGGATCTGGAGATATGGCTTAGCCTATACTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATCTGAAAAGTTGGATCTGGAGATATGGCTTAGCCTATACTGCT  400

seq1  CTTGCAGAGGTCCTGAGTTCAGTTCTTAGCACTCACAAAAGGCAACTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGAGGTCCTGAGTTCAGTTCTTAGCACTCACAAAAGGCAACTCAT  450

seq1  ACTTACCTTCCTCAAGCACCTGAACCCAAGTGTGCAAATGGACAAACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCTTCCTCAAGCACCTGAACCCAAGTGTGCAAATGGACAAACACA  500

seq1  CACACACAATTCAAAATTATTGAAATTTAAATAAAAGAAAAACGAGCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAATTCAAAATTATTGAAATTTAAATAAAAGAAAAACGAGCCTA  550

seq1  AGTCCCCTAAGATGACTCAGCGGATAAAGGCTCCTGCCACTAAACCTAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCCTAAGATGACTCAGCGGATAAAGGCTCCTGCCACTAAACCTAAC  600

seq1  AACCAGAGTTCAATCCCCAGAGCCCACATGATAGAAAGAGCGAAGGGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAGTTCAATCCCCAGAGCCCACATGATAGAAAGAGCGAAGGGATT  650

seq1  AGCATAAATTGTTCTTTGACATCCATGACACATACAAATATATGCAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAATTGTTCTTTGACATCCATGACACATACAAATATATGCAAACA  700

seq1  CATACACACGTGTACACATGTGCACAACAATAAGAGCACAAAGATTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACACGTGTACACATGTGCACAACAATAAGAGCACAAAGATTATTC  750

seq1  ACAGCACAACCACACCATAGCTTGCTCCCATACCCTTTCAAAATGCATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACAACCACACCATAGCTTGCTCCCATACCCTTTCAAAATGCATAC  800

seq1  TGCCTACAAGACTGGAGAGCATACCTCAGGTCGACCAGATTTACCTACCC  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGCCTACAAGACTGGAGAGCATACCTCATGTCGACCAGATTTACCTACCC  850

seq1  AAATTCTAGAGGGACCTCACTCTCATGAGAACTATAGGTAAAGTAGGCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAGAGGGACCTCACTCTCATGAGAACTATAGGTAAAGTAGGCCC  900

seq1  CTCATGTTCCAACATATTAAGCCCTGTGTCAAGCCCCACTAACCATAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTCCAACATATTAAGCCCTGTGTCAAGCCCCACTAACCATAGAT  950

seq1  CCTAAATAAAACAACAAAATCCAAACAAGCAGAGAAGCTATACTTCAAAG  1000
      |||||||||||||   |||||||||| |||||||||||||||||||||||
seq2  CCTAAATAAAACA--CAAATCCAAAC-AGCAGAGAAGCTATACTTCAAAG  997

seq1  TCCAGCTGGACCCAACTGAACACCACACAACAAGCTCACACCCTAGGACA  1050
      |||||||||| ||||||| |||||||||||||||||||||||||| ||||
seq2  TCCAGCTGGA-CCAACTG-ACACCACACAACAAGCTCACACCCTA-GACA  1044

seq1  CACTATTGAGAGAAGGCTCCAACTGGAGCTAATCATATTAAGAAATTACA  1100
       ||||||||||||  ||| ||||| ||||| ||||||||||||||||| |
seq2  AACTATTGAGAGA--GCT-CAACT-GAGCT-ATCATATTAAGAAATTAAA  1089

seq1  TCAGCCTCAG-AAAGACAAGTATCCCTTGGTTTTTC  1135
      |||| ||||| |||||| |||||||  | |||||||
seq2  TCAG-CTCAGAAAAGAC-AGTATCC--TTGTTTTTC  1121

seq1: chrX_160373565_160374758
seq2: B6Ng01-054F08.g_67_1248 (reverse)

seq1  AGTGGTTAAGTGTACTTTTAGA-GGATCTGGGTTCAATTCTCAGGACCCA  49
      ||||| ||||||||||||| || ||||||||||||| |||    ||||  
seq2  AGTGG-TAAGTGTACTTTTTGAGGGATCTGGGTTCATTTC---AGACC--  44

seq1  CATGACAGTTCACAATCATCTATAATTCTGCTCCAGGCGGATCTGGCATA  99
      ||| ||| ||  | ||||| | ||||| |  || |||| |||  | ||| 
seq2  CATTACATTT--CCATCAT-TTTAATT-TCGTCAAGGC-GATTCGACAT-  88

seq1  CTCTTTGGCCTCCACGGACACTGGGCTCCCAAATGTTGCACATAGATACA  149
       ||||| |||||| ||| |||  ||||||   ||||||||||||| ||| 
seq2  -TCTTTTGCCTCCCCGG-CACATGGCTCC---ATGTTGCACATAG-TACT  132

seq1  TGCAGGCAAAACACCCATATACATTAAGCAGAAATAAAGGGTGTGGACCC  199
      |||| || ||||||||| ||||| ||||||||| |||||| ||| |||||
seq2  TGCA-GCCAAACACCCAAATACAATAAGCAGAATTAAAGGTTGTTGACCC  181

seq1  CTAACAAGAAAAAAGGCGGGCTGAGAAGATGGCTCCGTGAGTAAA--GGT  247
      |||  || ||||||  | |||||||||||||   |||||||||||   ||
seq2  CTACAAAAAAAAAAACCAGGCTGAGAAGATGCTCCCGTGAGTAAAAGAGT  231

seq1  CC-TTGGTGTAAAAGCTTCACCTCGGTTCAATTCCTGGATCACATTGTAT  296
      || |||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCTTTGGTGTAAAAGCTTCACCTCGGTTCAATTCCTGGATCACATTGGAT  281

seq1  -AAATGACCCCTAAAAGTTGTCCTCTGAACACACATATGCACACACATAC  345
       |||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAATAACCCCTAAAATTTGTCCTCTGAACACACATATGCACACACATAC  331

seq1  ACAGAGAGACAGAGAGGAAGAGGAAGAGGAAGAGGGAGGAAGGGAAAGAG  395
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACAGAGAGACAGAGAGGAAGAGGAAGAGGAAGAGGGAGG-AGGGAAAGAG  380

seq1  GAGGAAAGGAGAGATGGAGGGAGGGGGAGAGGTGCACAGGCAGAAAACAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGGAGAGATGGAGGGAGGGGGAGAGGTGCACAGGCAGAAAACAG  430

seq1  GAAAAAATAGTAAAGCATCACTCCAGCATT-AACTGATGCTCTCGAGGTT  494
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAAAAATAGTAAAGCATCACTCCAGCATTAAACTGATGCTCTCGAGGTT  480

seq1  ATTATTACAAGTAATTTCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACAAGTAATTTCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  530

seq1  GTGTATAATTTCTC-AAAAAGTATGA-TTTACATGATAGCATTAGCTAGC  592
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  GTGTATAATTTCTCAAAAAAGTATGATTTTACATGATAGCATTAGCTAGC  580

seq1  ATCATCTATCTATACAGGTGAGTAGCTGCTATAAAAAGACAGACATATTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTATCTATACAGGTGAGTAGCTGCTATAAAAAGACAGACATATTT  630

seq1  AAAAACAACCAAGTTTATTTAGATTTGGGACTCTGGGTGGTTTTGTCTCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAACCAAGTTTATTTAGATTTGGGACTCTGGGTGGTTTTGTCTCT  680

seq1  ACTACCTGACCTCCTGCCACGACTTCTGGACCTTGACGAGCTACTACTCC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTGACCTCCTGCCACGACTTCTGGACCTTGACGAGCTACTACTCC  730

seq1  GGCTCCGGCTTTGACTCCAACTCCTGCTCTGGTTCCTGCCCCTGCCCCTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCGGCTTTGACTCCAACTCCTGCTCTGGTTCCTGCCCCTGCCCCTG  780

seq1  CCCCTGCCCCTGCCCCTGCCGCTGCCCCGGCCCCTGCTCCTGCTCCGGCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCCCTGCCCCTGCCGCTGCCCCGGCCCCTGCTCCTGCTCCGGCC  830

seq1  CCTGCTCCTGCTCCGGCTCCGGCTCCTGCTCCGGCCCCGGCCCCGGCTTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCTGCTCCGGCTCCGGCTCCTGCTCCGGCCCCGGCCCCGGCTTC  880

seq1  GGCTACGGGTCCGACTGCGGCTGCGGCTGCGGCTGCGACTGCGACTCCTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACGGGTCCGACTGCGGCTGCGGCTGCGGCTGCGACTGCGACTCCTG  930

seq1  CTGCGGTGGCTCCTCCTGCTCTGGCTCCAGGGGCCCGGACTGTGGTCCTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGGTGGCTCCTCCTGCTCTGGCTCCAGGGGCCCGGACTGTGGTCCTT  980

seq1  TCTTCTTCTACTGGGTGAACTGCGCCTCTCACGACTCTTCATTCCATATC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTACTGGGTGAACTGCGCCTCTCACGACTCTTCATTCCATATC  1030

seq1  TGTGAGATTTCTTCACCCTGTGTCTGCTACTGCTCTTCCTGTCAGACTCG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATTTCTTCACCCTGTGTCTGCTACTGCTCTTCCTGTCAGACTCG  1080

seq1  CCATTTCTCTTGTAGAAGTCGGGACTCGGGCTCCTCCTCCTCCTCCTTGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCTTGTAGAAGTCGGGACTCGGGCTCCTCCTCCTCCTCCTTGA  1130

seq1  CCTGCCATAGTATTCATCATAGTGACTGGCCCTTTCCCTCCTCTCTGAAT  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCATAGTATTCATCATAGTGACTGGCCCTTTCCCTCCTCTCTGAAT  1180

seq1  TC  1194
      ||
seq2  TC  1182