BAC Information

Click to search

BAC

Clone NameB6Ng01-054N14
ChromosomeX (Build37)
Map Location 97,019,407 - 97,156,105
singlet/doubletdoublet
Overlap geneEG620592
Upstream geneOphn1, Yipf6, LOC100042932, Stard8, LOC436219, Efnb1, Pja1, LOC100042947, Pcna-ps1
Downstream geneEda, Dgat2l4, Otud6a, Igbp1, LOC668257, Dgat2l3, LOC620734, P2ry4, Arr3, Pdzd11, Kif4, Gdpd2, Dlg3, Tex11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054N14.bB6Ng01-054N14.g
ACCDH877480DH877481
length1,175380
definitionDH877480|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N14, 5' end.DH877481|Mus musculus domesticus DNA, BAC clone: B6Ng01-054N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,019,407 - 97,020,616)(97,155,720 - 97,156,105)
sequence
gaattctggtactagagctcagtctcctcatgctaaccctttgcttttgc
tgtggcctcctctcaagttccccaggtcctttctcctctctctttctctg
cgtctctctccagcagcaagtgggctctcctgctcttattgtctaatgcc
tgcagacaagctgtgccagcttctcggtctcctcctgtggtttctacctc
ttccagagctttctccttcaactgaggtccaaagcccaattttccctaag
tctttaatccagttttctgatgccatgaaagagacaggcaatcctgagcc
ccttcttcatgacaccctgtctcctcattcacttacctcaccttgtcaca
gcccttctttacccacactaagcctaaggccctccccctgagctcagagc
tcccccgtcttgcccctaccccaagtaggatcctgtggagataatatccc
acacccagaatcctcataagtgagaccctgaagtcctatgctaagatgag
gaggttttctctgtctgtaaatcaactctggagctgggttctagagtcag
gtgacccccaatcccagggtctttgttctgagtgcctcaatcagatcctt
ctggtgtggccctaggaaccctgttctctgcctctgtgatgtctgcccct
gttttgggccacacagagccccaggaatcatacctgtcctcactgctgcc
tgtgacacctcccaatttagtaccagctgcaacattttcttaatgtgcga
ctgacttcctctcgcatagcagagagatgtagctaacttgggccaatgcc
catccccatactggcctctcctaggtctaaaggccacaccccatccttcc
cttaattccctatgattacccctcacacacacacacacacacacacacac
acacacacacacacacacacacacacatctttccctagctgtgctcagag
ttaccagacaatattcccctccagatgtcatcgctaatctgccgtgtcct
gcccactgctgctgctctccactcttgctctttcttctctcatcagacac
tcgggtggaggagatgagggcccggagcactcggctcttttctcaccgct
attcctctaagacagaagtcagaggagaagtgtcagtcttggcatagcat
agctactaatcagctaggtcaaaga
tgtcatttttctcttgcacttcacacgttgtgtaactgattttctattga
ctgcccatccacctttgagtttgatgtatgtctgaaaaccagtagaggca
cccaaatcaaaagcaaaccaaaggggtttggttgatggttttctctattc
ttccacggtatttatcagcttccctctctgttcagcttgagcttggagtt
ccttgtgtagtatggaagaggaaacgtgtgtgtggcggtaaccttgggac
cctttcgtacttgttgctgttctcactgactgtattccagcaccagccca
caatcttaggcagccggaaaagacatataacagacggttctctctctctc
tctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_97019407_97020616
seq2: B6Ng01-054N14.b_50_1224

seq1  GAATTCTGGTACTAGAGCTCAGTCTCCTCATGCTAACCCTTTGCTTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTACTAGAGCTCAGTCTCCTCATGCTAACCCTTTGCTTTTGC  50

seq1  TGTGGCCTCCTCTCAAGTTCCCCAGGTCCTTTCTCCTCTCTCTTTCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTCCTCTCAAGTTCCCCAGGTCCTTTCTCCTCTCTCTTTCTCTG  100

seq1  CGTCTCTCTCCAGCAGCAAGTGGGCTCTCCTGCTCTTATTGTCTAATGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCTCTCCAGCAGCAAGTGGGCTCTCCTGCTCTTATTGTCTAATGCC  150

seq1  TGCAGACAAGCTGTGCCAGCTTCTCGGTCTCCTCCTGTGGTTTCTACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACAAGCTGTGCCAGCTTCTCGGTCTCCTCCTGTGGTTTCTACCTC  200

seq1  TTCCAGAGCTTTCTCCTTCAACTGAGGTCCAAAGCCCAATTTTCCCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGAGCTTTCTCCTTCAACTGAGGTCCAAAGCCCAATTTTCCCTAAG  250

seq1  TCTTTAATCCAGTTTTCTGATGCCATGAAAGAGACAGGCAATCCTGAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATCCAGTTTTCTGATGCCATGAAAGAGACAGGCAATCCTGAGCC  300

seq1  CCTTCTTCATGACACCCTGTCTCCTCATTCACTTACCTCACCTTGTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTCATGACACCCTGTCTCCTCATTCACTTACCTCACCTTGTCACA  350

seq1  GCCCTTCTTTACCCACACTAAGCCTAAGGCCCTCCCCCTGAGCTCAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTCTTTACCCACACTAAGCCTAAGGCCCTCCCCCTGAGCTCAGAGC  400

seq1  TCCCCCGTCTTGCCCCTACCCCAAGTAGGATCCTGTGGAGATAATATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCGTCTTGCCCCTACCCCAAGTAGGATCCTGTGGAGATAATATCCC  450

seq1  ACACCCAGAATCCTCATAAGTGAGACCCTGAAGTCCTATGCTAAGATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAGAATCCTCATAAGTGAGACCCTGAAGTCCTATGCTAAGATGAG  500

seq1  GAGGTTTTCTCTGTCTGTAAATCAACTCTGGAGCTGGGTTCTAGAGTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTTCTCTGTCTGTAAATCAACTCTGGAGCTGGGTTCTAGAGTCAG  550

seq1  GTGACCCCCAATCCCAGGGTCTTTGTTCTGAGTGCCTCAATCAGATCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCCCAATCCCAGGGTCTTTGTTCTGAGTGCCTCAATCAGATCCTT  600

seq1  CTGGTGTGGCCCTAGGAACCCTGTTCTCTGCCTCTGTGATGTCTGCCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTGGCCCTAGGAACCCTGTTCTCTGCCTCTGTGATGTCTGCCCCT  650

seq1  GTTTTGGGCCACACAGAGCCCCAGGAATCATACCTGTCCTCACTGCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGGCCACACAGAGCCCCAGGAATCATACCTGTCCTCACTGCTGCC  700

seq1  TGTGACACCTCCCAATTTAGTACCAGCTGCAACATTTTCTTAATGTGCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACACCTCCCAATTTAGTACCAGCTGCAACATTTTCTTAATGTGCGA  750

seq1  CTGACTTCCTCTCGCATAGCAGAGAGATGTAGCTAACTTGGGCCAATGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCCTCTCGCATAGCAGAGAGATGTAGCTAACTTGGGCCAATGCC  800

seq1  CATCCCCATACTGGCCTCTCCTAGGTCTAAGGGCCACACCCCATCCTTCC  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATCCCCATACTGGCCTCTCCTAGGTCTAAAGGCCACACCCCATCCTTCC  850

seq1  CTTAATTCCCTATGATTACCCCTCAACACACACACACACACACACACACA  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTAATTCCCTATGATTACCCCTC-ACACACACACACACACACACACACA  899

seq1  CACACACACACACACACACACACACACAATCTTTCCCTTAGCTGTGCTCA  950
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  CACACACACACACACACACACACACAC-ATCTTTCCC-TAGCTGTGCTCA  947

seq1  GAGTTACCAGACAAATAATTCCCCTCCCAGATGTCATCCGCCTAATCTTG  1000
      ||||||||||||||   |||||||| ||||||||||||   |||||| ||
seq2  GAGTTACCAGACAA--TATTCCCCT-CCAGATGTCATC--GCTAATC-TG  991

seq1  CCGTGTCCCTGCCCACTGCTGGCTGCTTCTCCCACCTCTGCCTCTTTCTT  1050
      |||||| ||||||||||||| ||||| |||||   ||||  |||||||||
seq2  CCGTGT-CCTGCCCACTGCT-GCTGC-TCTCC--ACTCTTGCTCTTTCTT  1036

seq1  CTCTCAATTCAGAACACTCGGGGTGAGGAGAATGAGGGCACGGGAGCAAA  1100
      ||||||  |||| |||||||||  |||||| |||||||| | |||||  |
seq2  CTCTCA--TCAG-ACACTCGGGTGGAGGAG-ATGAGGGC-CCGGAGC--A  1079

seq1  CTCCGGCTTCTTTTCTCACCGCTATTCCTCTAAGACCAAGAGGCCCAAGA  1150
      || |||| ||||||||||||||||||||||||||||  ||| | |  |||
seq2  CT-CGGC-TCTTTTCTCACCGCTATTCCTCTAAGAC--AGAAGTC--AGA  1123

seq1  GGAGGGACGTTGTCAGCTCTTGCAGTAGCCATTAGCTACACTAATCAGCT  1200
      |||  || | |||||| |||||   ||||   |||||  |||||||||||
seq2  GGA--GAAG-TGTCAG-TCTTGGCATAGC--ATAGCT--ACTAATCAGCT  1165

seq1  AGTTCAAAGA  1210
      || |||||||
seq2  AGGTCAAAGA  1175

seq1: chrX_97155720_97156105
seq2: B6Ng01-054N14.g_68_453 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCGTCTG  50

seq1  TTATATGTCTTTTCCGGCTGCCTAAGATTGTGGGCTGGTGCTGGAATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGTCTTTTCCGGCTGCCTAAGATTGTGGGCTGGTGCTGGAATACA  100

seq1  GTCAGTGAGAACAGCAACAAGTACGAAAGGGTCCCAAGGTTACCGCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGAGAACAGCAACAAGTACGAAAGGGTCCCAAGGTTACCGCCACA  150

seq1  CACACGTTTCCTCTTCCATACTACACAAGGAACTCCAAGCTCAAGCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTTTCCTCTTCCATACTACACAAGGAACTCCAAGCTCAAGCTGAA  200

seq1  CAGAGAGGGAAGCTGATAAATACCGTGGAAGAATAGAGAAAACCATCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGAAGCTGATAAATACCGTGGAAGAATAGAGAAAACCATCAAC  250

seq1  CAAACCCCTTTGGTTTGCTTTTGATTTGGGTGCCTCTACTGGTTTTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCCTTTGGTTTGCTTTTGATTTGGGTGCCTCTACTGGTTTTCAGA  300

seq1  CATACATCAAACTCAAAGGTGGATGGGCAGTCAATAGAAAATCAGTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATCAAACTCAAAGGTGGATGGGCAGTCAATAGAAAATCAGTTACA  350

seq1  CAACGTGTGAAGTGCAAGAGAAAAATGACAGAATTC  386
      ||||||||||||||||||||||||||||||||||||
seq2  CAACGTGTGAAGTGCAAGAGAAAAATGACAGAATTC  386