BAC Information

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BAC

Clone NameB6Ng01-055K23
ChromosomeX (Build37)
Map Location 44,113,808 - 44,226,397
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040075, Actrt1, EG245405, LOC665632
Downstream geneEG434775, LOC236775, LOC100040133, LOC100040145, EG624187, Smarca1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055K23.bB6Ng01-055K23.g
ACCDH878061DH878062
length1,0301,017
definitionDH878061|Mus musculus domesticus DNA, BAC clone: B6Ng01-055K23, 5' end.DH878062|Mus musculus domesticus DNA, BAC clone: B6Ng01-055K23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,225,371 - 44,226,397)(44,113,808 - 44,114,828)
sequence
gaattctttgttcagttctgagccccattttttaatggggttgttcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagcccc
ctatctgatttaggataggtaaaaatcctttcccactctgttggtggtct
ttttgtcttattgaaggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacatgccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttcccaaa
acccattcttaatgaaagccactagacatttgccttgccttattttgatc
tctgatataatgcatgtgccatgcattttgtgagtagtttcttacccatt
tattttagatattgcaaagtataggttgaagcaatgtttataatttcttc
aaaaattttcaccattattcacaatgccatatacatagagaatatttatt
cgctattattttactgattttcctaaggtggccaactgaacttaattaac
acttcattctaggttgaaatgggaagttttgggtcttgagtagatgtgca
aacataaaagctttaataatgaaaacttagagtgggaaaaagggaatgaa
tgaagaaagacagcagcaagtagttgaatggattatgatgagtttagaac
tttctataaaaggctcctggcaagatgaactcatccatctttgtagtagt
gattttcctaattagagatgttaaggacagaacgtcatgccaagactgta
attgtaggaagggtttgtgtgtgtgtgtgtatgttaacatatttggcttt
ctttattgaagtactgtgaaagtgtgtgcaaacatatcttacactgtatt
cccctacctcttctttactgttttgtttgtaacacagttttaggaaagaa
attttttctgtttttcaagaattttaataatttattctttttgaaagaag
tggggataatttgagaatgtttgagagaga
gaattcttagttatcagggaggggcactacttagaaggattagtaggtgc
gatcttattggggtagatgtggtttgttggaggatgggtgggctttgagg
tttcagaattccaggccagggtcatggctttgtctttcttctgcctggct
attcagatgtagaactcagctacttctctagcaccatgcccatgttgcca
tgcttcctgacatgatgacaatagactaaatctgtgaaactgtaagccat
tcccaatgaaatagtttcctttataaaagttgctatagtcatgctggcta
ttcaaagcaatagaacactcaccagggaatcttctcccaaaactgagttc
aaattttgcatgcaatttgctgttaattcactaaattggtgacttttgcc
aaaaggccataagattagtccattcttctactatagatagaatataatga
taaatattaaggatacagcagtgactgaattcaatatgcttccttctttc
atggagtttatagtttacactcctgtttgacttttatctacccatccagg
ggtattcctttaacttccatgtaagcgctgctgatgcaagtagcccaggc
aatatagaaaagataaacaaaaatcattagcattgtaatctgggatataa
caatttactaactacaatgttttctaaatgtcaaaattggtgactttaaa
gatcttgagattttattatcatgattagcatgtaactgtgtatttataat
tcataatagaatgtggtttgaaatactgaccttctaattttcaaacttcc
agcaaacttgatgcagactggaaaacaaatttcaaaatatcacttcaacc
tgatggtgacattccatccaatcattcattcctgaaatcaatttagctta
catctgggatggaactaattatgttcatggataaattgtggggtttttaa
agataaattaactgcctgaggattttttcctggagctaatataatggacc
acactttagcttacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_44225371_44226397
seq2: B6Ng01-055K23.b_46_1075 (reverse)

seq1  TCTCTCTCCAAACA-TCTCAAA-TATCCCCACTTCTTTC-AAAAGAATAA  47
      ||||||| |||||| ||||||| |||||||||||||||| ||||||||||
seq2  TCTCTCT-CAAACATTCTCAAATTATCCCCACTTCTTTCAAAAAGAATAA  49

seq1  A-TATTAAAATTCTGAAAAAACAG-AAAAATTTCTTTCCTAAAACTGTGT  95
      | ||||||||||||  |||||||| |||||||||||||||||||||||||
seq2  ATTATTAAAATTCTTGAAAAACAGAAAAAATTTCTTTCCTAAAACTGTGT  99

seq1  TAACAAACAAAACAGTAAAGAAGAGGTAGGGGAATACAGTGTAAGATATG  145
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-ACAAACAAAACAGTAAAGAAGAGGTAGGGGAATACAGTGTAAGATATG  148

seq1  TTTGCACACACTTTCACAGTACTTCAATAAAGAAAGCCAAATATGTTAAC  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACACACTTTCACAGTACTTCAATAAAGAAAGCCAAATATGTTAAC  198

seq1  ATACACACACACACACAAACCCTTCCTACAATTACAGTCTTGGCATGACG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACAAACCCTTCCTACAATTACAGTCTTGGCATGACG  248

seq1  TTCTGTCCTTAACATCTCTAATTAGGAAAATCACTACTACAAAGATGGAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCTTAACATCTCTAATTAGGAAAATCACTACTACAAAGATGGAT  298

seq1  GAGTTCATCTTGCCAGGAGCCTTTTATAGAAAGTTCTAAACTCATCATAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCATCTTGCCAGGAGCCTTTTATAGAAAGTTCTAAACTCATCATAA  348

seq1  TCCATTCAACTACTTGCTGCTGTCTTTCTTCATTCATTCCCTTTTTCCCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCAACTACTTGCTGCTGTCTTTCTTCATTCATTCCCTTTTTCCCA  398

seq1  CTCTAAGTTTTCATTATTAAAGCTTTTATGTTTGCACATCTACTCAAGAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAGTTTTCATTATTAAAGCTTTTATGTTTGCACATCTACTCAAGAC  448

seq1  CCAAAACTTCCCATTTCAACCTAGAATGAAGTGTTAATTAAGTTCAGTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACTTCCCATTTCAACCTAGAATGAAGTGTTAATTAAGTTCAGTTG  498

seq1  GCCACCTTAGGAAAATCAGTAAAATAATAGCGAATAAATATTCTCTATGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTTAGGAAAATCAGTAAAATAATAGCGAATAAATATTCTCTATGT  548

seq1  ATATGGCATTGTGAATAATGGTGAAAATTTTTGAAGAAATTATAAACATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCATTGTGAATAATGGTGAAAATTTTTGAAGAAATTATAAACATT  598

seq1  GCTTCAACCTATACTTTGCAATATCTAAAATAAATGGGTAAGAAACTACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAACCTATACTTTGCAATATCTAAAATAAATGGGTAAGAAACTACT  648

seq1  CACAAAATGCATGGCACATGCATTATATCAGAGATCAAAATAAGGCAAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATGCATGGCACATGCATTATATCAGAGATCAAAATAAGGCAAGG  698

seq1  CAAATGTCTAGTGGCTTTCATTAAGAATGGGTTTTGGGAAAAGCCTTGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCTAGTGGCTTTCATTAAGAATGGGTTTTGGGAAAAGCCTTGAA  748

seq1  GATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCATGTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCATGTGC  798

seq1  TGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCT  848

seq1  GCAAGGCAAAAGACACCTTCAATAAGACAAAAAGACCACCAACAGAGTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCAAAAGACACCTTCAATAAGACAAAAAGACCACCAACAGAGTGG  898

seq1  GAAAGGATTTTTACCTATCCTAAATCAGATAGGGGGCTAATATCCAACAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGATTTTTACCTATCCTAAATCAGATAGGGGGCTAATATCCAACAT  948

seq1  ATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCGAACAACCCCATTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCGAACAACCCCATTA  998

seq1  AAAAATGGGGCTCAGAACTGAACAAAGAATTC  1027
      ||||||||||||||||||||||||||||||||
seq2  AAAAATGGGGCTCAGAACTGAACAAAGAATTC  1030

seq1: chrX_44113808_44114828
seq2: B6Ng01-055K23.g_66_1082

seq1  GAATTCTTAGTTATCAGGGAGGGGCACTACTTAGAAGGATTAGTAGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTATCAGGGAGGGGCACTACTTAGAAGGATTAGTAGGTGC  50

seq1  GATCTTATTGGGGTAGATGTGGTTTGTTGGAGGATGGGTGGGCTTTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTATTGGGGTAGATGTGGTTTGTTGGAGGATGGGTGGGCTTTGAGG  100

seq1  TTTCAGAATTCCAGGCCAGGGTCATGGCTTTGTCTTTCTTCTGCCTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAATTCCAGGCCAGGGTCATGGCTTTGTCTTTCTTCTGCCTGGCT  150

seq1  ATTCAGATGTAGAACTCAGCTACTTCTCTAGCACCATGCCCATGTTGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATGTAGAACTCAGCTACTTCTCTAGCACCATGCCCATGTTGCCA  200

seq1  TGCTTCCTGACATGATGACAATAGACTAAATCTGTGAAACTGTAAGCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTGACATGATGACAATAGACTAAATCTGTGAAACTGTAAGCCAT  250

seq1  TCCCAATGAAATAGTTTCCTTTATAAAAGTTGCTATAGTCATGCTGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGAAATAGTTTCCTTTATAAAAGTTGCTATAGTCATGCTGGCTA  300

seq1  TTCAAAGCAATAGAACACTCACCAGGGAATCTTCTCCCAAAACTGAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGCAATAGAACACTCACCAGGGAATCTTCTCCCAAAACTGAGTTC  350

seq1  AAATTTTGCATGCAATTTGCTGTTAATTCACTAAATTGGTGACTTTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGCATGCAATTTGCTGTTAATTCACTAAATTGGTGACTTTTGCC  400

seq1  AAAAGGCCATAAGATTAGTCCATTCTTCTACTATAGATAGAATATAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCCATAAGATTAGTCCATTCTTCTACTATAGATAGAATATAATGA  450

seq1  TAAATATTAAGGATACAGCAGTGACTGAATTCAATATGCTTCCTTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTAAGGATACAGCAGTGACTGAATTCAATATGCTTCCTTCTTTC  500

seq1  ATGGAGTTTATAGTTTACACTCCTGTTTGACTTTTATCTACCCATCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGTTTATAGTTTACACTCCTGTTTGACTTTTATCTACCCATCCAGG  550

seq1  GGTATTCCTTTAACTTCCATGTAAGCGCTGCTGATGCAAGTAGCCCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCCTTTAACTTCCATGTAAGCGCTGCTGATGCAAGTAGCCCAGGC  600

seq1  AATATAGAAAAGATAAACAAAAATCATTAGCATTGTAATCTGGGATATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAAAAGATAAACAAAAATCATTAGCATTGTAATCTGGGATATAA  650

seq1  CAATTTACTAACTACAATGTTTTCTAAATGTCAAAATTGGTGACTTTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTACTAACTACAATGTTTTCTAAATGTCAAAATTGGTGACTTTAAA  700

seq1  GATCTTGAGA-TTTATTATCATGATTAGCATGTAACTGTGTA-TTAT-AT  747
      |||||||||| ||||||||||||||||||||||||||||||| |||| ||
seq2  GATCTTGAGATTTTATTATCATGATTAGCATGTAACTGTGTATTTATAAT  750

seq1  TCATAATAGAATGTGGTTTGAAATACTGACCTTCTAATTTTCAAACTTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATAGAATGTGGTTTGAAATACTGACCTTCTAATTTTCAAACTTCC  800

seq1  AGCAAACTTGATGCAGACT-GAAAACAAAATTCAAAATATCACTTCAACC  846
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  AGCAAACTTGATGCAGACTGGAAAACAAATTTCAAAATATCACTTCAACC  850

seq1  TGATGGTGACATTCCATCAAATCAATTCATTCCTGAAATCAATTTAGCTT  896
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  TGATGGTGACATTCCATCCAATC-ATTCATTCCTGAAATCAATTTAGCTT  899

seq1  ACATCTGGTATGGAACTAATTTATGTTCATGGATAAATTGTTGGGGTTTT  946
      |||||||| |||||||||| |||||||||||||||||||||  ||| |||
seq2  ACATCTGGGATGGAACTAA-TTATGTTCATGGATAAATTGT--GGGGTTT  946

seq1  TTAAAGATAAATTAGACTGCCTGAGGATTTTTTTCCTGTAGTCTATTATT  996
      |||||||||||||| |||||||||||| |||||||||| || ||| || |
seq2  TTAAAGATAAATTA-ACTGCCTGAGGA-TTTTTTCCTGGAG-CTAATA-T  992

seq1  AATGAGCCACACTTTAGCTTACATG  1021
      ||||  |||||||||||||||||||
seq2  AATGGACCACACTTTAGCTTACATG  1017