BAC Information

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BAC

Clone NameB6Ng01-056E09
ChromosomeX (Build37)
Map Location 31,867,002 - 32,026,380
singlet/doubletdoublet
Overlap geneLOC100040732, LOC100040743, LOC385298
Upstream geneLOC100040533, LOC100039328, LOC100040552, LOC100040575, LOC100040585, LOC100039362, LOC100040606, LOC100040612, LOC673784, LOC100040650, LOC100040662, LOC100039419, LOC100039429, LOC100040698, LOC630028, LOC100040722
Downstream geneLOC100039460, LOC100040781, LOC100039515, LOC100039522, LOC100039473, LOC100039550, LOC100039557, LOC100039573, EG665074, LOC100039585
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056E09.bB6Ng01-056E09.g
ACCDH878486DH878487
length1,095430
definitionDH878486|Mus musculus domesticus DNA, BAC clone: B6Ng01-056E09, 5' end.DH878487|Mus musculus domesticus DNA, BAC clone: B6Ng01-056E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,025,270 - 32,026,380)(31,867,002 - 31,867,437)
sequence
gaattcctatggatcctttatgattgttagggatggttttaaaggtcagg
ccattgtcatagttatcttgatacaatcttaggccacaggcaagagggcg
agaactttctcaagcctctaagttcctcttcttagcagtaaattttatga
tcagtggattacaccatctcttagtgggctgtaagggccaggctgcaggc
cagtgtgttgaggaaattactgtcacatctgccccagtatctaggagccc
ttgaaactgtttgtcctctagaaacaaagtcggcatgggccatgaatcag
ttattttctgtgcccagtagacttctgaggatcccagggaggatggtcct
tgctcctctttcaaataagggaaatggctgaatagtgggagtggtagggc
ttgggctatgcgctctctagccctaagggtaagtggttcctgcgtggcga
tgactaagatttttatctccccatggtagtcggtgtcaaccactgtagga
gtcaccattaggccttgtaaaagtctggacactcggccgatgatgagaaa
aaacttcttttggggagggggcccaaattcacctgtgttaactgctgtta
attgaggcatataataatcaggggtgccccaggcggcatctgcacccaat
gtgaggacacagatgtctacttttaacttgggccaatggggctcggcacc
aatcttggagctggagttagagcagtcccaatggccaggttaatagactt
agaaacttgttgagaaaacacatctaccttgttacaaagctttgatcata
ccatttatatctaaactcttggttttacctctcagggcagccctacatgc
tgaattggcattttcaggagcaagttgtaggactaacaaaccctcacttt
cctcagtcccagaaatttctcagctgcttcctgcatctggcaacgaactg
cacataggattcttggggccctattatctgatagggcatagttagcgcct
tgctgcaggacagcgcaccagtctctcaggtcgcttgtgctgtggcgaga
cacacggggagagccctaattgtttatgtctgcagcgaattgcct
acaggtttttatatttcttcactcagtttagggatgaaagctaagtcatt
ttcttcctttctggaaaagcactatttaaatggcattcgtctttgtcata
taccctctaaatatcagggaacattggaggctcttcttttctatttttcg
gtgtccaccctattatcagttttccattgcatgttcattgagattagcca
gctcttttcttcctgatgcttcccactgagtatgaaataatgcaaggtag
tatgtttgtttgcttgcttgtatgtcactgtcagaacaagtttaatgtgt
cctatgccctatgtttgcacgtttatagaatttaacgtgttgagaggagg
agaaatgtaagcacacctttaccctcatgaaggagatgcacctagtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_32025270_32026380
seq2: B6Ng01-056E09.b_45_1139 (reverse)

seq1  AGGCAATTTCGCTGCAGACATAAAACAATTAGGGCTCTCCCCTGTTGTCC  50
      |||||| |||||||||||||| ||||||||||||||||||||   ||| |
seq2  AGGCAA-TTCGCTGCAGACAT-AAACAATTAGGGCTCTCCCCGTGTGT-C  47

seq1  TCGCCCAGACAGCACAAGCGGCCCTGAGAGCTTGGTGCGCTGTCCCTGCA  100
      |||||   ||||||||||| | ||||||||  ||||||||||| ||||||
seq2  TCGCC---ACAGCACAAGC-GACCTGAGAGACTGGTGCGCTGT-CCTGCA  92

seq1  GCAAGGGCGCTAACTATGCCCCTAATCAAGATTATATAAGGGCCCCAAGA  150
      |||| ||||||||||||||||   ||| |||| ||   ||||||||||||
seq2  GCAA-GGCGCTAACTATGCCC--TATC-AGATAAT---AGGGCCCCAAGA  135

seq1  ATCCTATGTGCAGTTCGTTGCCAGATTGCAGGAAGCAGCTGAGAAATTTC  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATCCTATGTGCAGTTCGTTGCCAGA-TGCAGGAAGCAGCTGAGAAATTTC  184

seq1  TGGGACCTGAGGAAAGTGAGGGTTTGTTAGTCCTACAACTTGCTCTTGAA  250
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGGGA-CTGAGGAAAGTGAGGGTTTGTTAGTCCTACAACTTGCTCCTGAA  233

seq1  AATGCCAATTCAGCATGTAGGGCTGCCCTGAGAGGTAAAACCAAGAGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAATTCAGCATGTAGGGCTGCCCTGAGAGGTAAAACCAAGAGTTT  283

seq1  AGATATAAATGGTATGATC-AAGCTTTGTAACAAGGTAGATGTGTTTTCT  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGATATAAATGGTATGATCAAAGCTTTGTAACAAGGTAGATGTGTTTTCT  333

seq1  CAACAAGTTTCTAAGTCTATTAACCTGGCCATTGGGACTGCTCTAACTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTTTCTAAGTCTATTAACCTGGCCATTGGGACTGCTCTAACTCC  383

seq1  AGCTCCAAGATTGGTGCCGAGCCCCATTGGCCCAAGTTAAAAGTAGACAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCAAGATTGGTGCCGAGCCCCATTGGCCCAAGTTAAAAGTAGACAT  433

seq1  CTGTGTCCTCACATTGGGTGCAGATGCCGCCTGGGGCACCCCTGATTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCTCACATTGGGTGCAGATGCCGCCTGGGGCACCCCTGATTATT  483

seq1  ATATGCCTCAATTAACAGCAGTTAACACAGGTGAATTTGGGCCCCCTCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCTCAATTAACAGCAGTTAACACAGGTGAATTTGGGCCCCCTCCC  533

seq1  CAAAAGAAGTTTTTTCTCATCATCGGCCGAGTGTCCAGACTTTTACAAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAGTTTTTTCTCATCATCGGCCGAGTGTCCAGACTTTTACAAGG  583

seq1  CCTAATGGTGACTCCTACAGTGGTTGACACCGACTACCATGGGGAGATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATGGTGACTCCTACAGTGGTTGACACCGACTACCATGGGGAGATAA  633

seq1  AAATCTTAGTCATCGCCACGCAGGAACCACTTACCCTTAGGGCTAGAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTAGTCATCGCCACGCAGGAACCACTTACCCTTAGGGCTAGAGAG  683

seq1  CGCATAGCCCAAGCCCTACCACTCCCACTATTCAGCCATTTCCCTTATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATAGCCCAAGCCCTACCACTCCCACTATTCAGCCATTTCCCTTATTT  733

seq1  GAAAGAGGAGCAAGGACCATCCTCCCTGGGATCCTCAGAAGTCTACTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGGAGCAAGGACCATCCTCCCTGGGATCCTCAGAAGTCTACTGGG  783

seq1  CACAGAAAATAACTGATTCATGGCCCATGCCGACTTTGTTTCTAGAGGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAATAACTGATTCATGGCCCATGCCGACTTTGTTTCTAGAGGAC  833

seq1  AAACAGTTTCAAGGGCTCCTAGATACTGGGGCAGATGTGACAGTAATTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTTTCAAGGGCTCCTAGATACTGGGGCAGATGTGACAGTAATTTC  883

seq1  CTCAACACACTGGCCTGCAGCCTGGCCCTTACAGCCCACTAAGAGATGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACACTGGCCTGCAGCCTGGCCCTTACAGCCCACTAAGAGATGGT  933

seq1  GTAATCCACTGATCATAAAATTTACTGCTAAGAAGAGGAACTTAGAGGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCCACTGATCATAAAATTTACTGCTAAGAAGAGGAACTTAGAGGCT  983

seq1  TGAGAAAGTTCTCGCCCTCTTGCCTGTGGCCTAAGATTGTATCAAGATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAGTTCTCGCCCTCTTGCCTGTGGCCTAAGATTGTATCAAGATAA  1033

seq1  CTATGACAATGGCCTGACCTTTAAAACCATCCCTAACAATCATAAAGGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACAATGGCCTGACCTTTAAAACCATCCCTAACAATCATAAAGGAT  1083

seq1  CCATAGGAATTC  1111
      ||||||||||||
seq2  CCATAGGAATTC  1095

seq1: chrX_31867002_31867437
seq2: B6Ng01-056E09.g_71_506

seq1  GAATTCACAGGTTTTTATATTTCTTCACTCAGTTTAGGGATGAAAGCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTTTTTATATTTCTTCACTCAGTTTAGGGATGAAAGCTAA  50

seq1  GTCATTTTCTTCCTTTCTGGAAAAGCACTATTTAAATGGCATTCGTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTCTTCCTTTCTGGAAAAGCACTATTTAAATGGCATTCGTCTTT  100

seq1  GTCATATACCCTCTAAATATCAGGGAACATTGGAGGCTCTTCTTTTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATACCCTCTAAATATCAGGGAACATTGGAGGCTCTTCTTTTCTAT  150

seq1  TTTTCGGTGTCCACCCTATTATCAGTTTTCCATTGCATGTTCATTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCGGTGTCCACCCTATTATCAGTTTTCCATTGCATGTTCATTGAGAT  200

seq1  TAGCCAGCTCTTTTCTTCCTGATGCTTCCCACTGAGTATGAAATAATGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGCTCTTTTCTTCCTGATGCTTCCCACTGAGTATGAAATAATGCA  250

seq1  AGGTAGTATGTTTGTTTGCTTGCTTGTATGTCACTGTCAGAACAAGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTATGTTTGTTTGCTTGCTTGTATGTCACTGTCAGAACAAGTTTA  300

seq1  ATGTGTCCTATGCCCTATGTTTGCACGTTTATAGAATTTAACGTGTTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCTATGCCCTATGTTTGCACGTTTATAGAATTTAACGTGTTGAG  350

seq1  AGGAGGAGAAATGTAAGCACACCTTTACCCTCATGAAGGAGATGCACCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGAAATGTAAGCACACCTTTACCCTCATGAAGGAGATGCACCTA  400

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  436
      ||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  436