BAC Information

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BAC

Clone NameB6Ng01-056I20
ChromosomeX (Build37)5 (Build37)
Map Location 152,851,066 - 152,851,802136,828,645 - 136,829,690
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667394, Ptchd1
Downstream gene4930503H13Rik, LOC640803, LOC434885, Phex
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056I20.bB6Ng01-056I20.g
ACCDH878675DH878676
length1,0801,024
definitionDH878675|Mus musculus domesticus DNA, BAC clone: B6Ng01-056I20, 5' end.DH878676|Mus musculus domesticus DNA, BAC clone: B6Ng01-056I20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(152,851,066 - 152,851,802)(136,828,645 - 136,829,690)
sequence
gaattctcttcgccaaggtggtacagctctctaagacagacactctcaga
cggtctttggtgactcatgcactttattccttgtggacggggtcctctat
atattttgaagtgggttaggatctagaggcagatgctttctattggcttg
gtctgagatgttagagatgcttcatctgcatgcggaggggtgtggagcag
tggaccgtaccaggaaacttggtatagttgagtgggtacagagaccccag
cacccatctgagggtggtaggcgtttccctgatccctaccatattcctgg
cctggaacacgggaccacactccccacataagaacgtgaccaatggctgg
gcatggtggtttaagattggacctcacatcataaccgttctctacttgaa
cttgtaatcctcttacttgagtctcccaattagtggaattgaacacaggt
ggagccatgcctgcttgttgttttcttttaaataagttttcattaaaaat
taaaggttgttaagctatttgctactgatagattcaggaagagagggagt
aattgctctcagatgtgtcccctctgatgactttactagattataattca
gagtcccaatccagtagttgaaaagatgaccctgaataaaacaaaatagg
ccattgaaataagctatgatgaccataaaatacaaagaccataaaagtac
gcgacccatagataagatctaatatacagaatcagaccacaaagaagttc
ctcgtgacatattataattaaaaccataaaatacaaagaaaagtgaatga
aataatgaaaacagttcaagatataaaactagaatttaacaaagatttgg
aatcactgaagagcacctaccaaaaaatatctataatataaaataggaaa
tcgactaaagcatcaggactctcaccaacaaagtatgaacatagaaaaga
gatttagtcattgaacaaatatacttcactcaagaaattgtaaagtctaa
aatattcaagcagaaccatctaggaatccagacactactaaaagaccaat
gtggaccataggaatatgaaaggaaagaaa
gaattctcgtcttctgggctggttacattctttattgaaagagagatact
ggacacttagatacccaccaaggacaaaaagggtcctcattctaagatag
catgtaagaaactttgtaggcacatgcatgtgtatttgtgcatgcttgtg
gaggcagaggacactacctcagttgctcagaaatcatccacactggtttt
tgagacagggtctctcagaggtctggagctctgtcagcaagcccttggaa
tccaccgtctacatctcccccgcacttgagaaacttttaggaagcagaat
gaaatgtttcctataggaaagccagtgtagagccagataattgagctcat
tgttttccttcacggcttgtttgccctttcattctcttcctaaggtgcta
gatgttgaggaatgtctccatttgccagaaagacagtggggtgtctcata
tttccccgccagaccgccagttctgaagcgagcctgcagaatgaattttt
aatgctgaatgttatggcatcgctcctgcaaccagccgcattgctctcct
gagcctacagatttactgctcggatgagcagagtgaggacttgggggcac
tcaacacagtgaggattaaccccctaataaccacactggtgccctcctag
cttcagaaagataaccctaaggagtcatgagggaaaattaaaactccgta
gtgttctgaatgttctccaaacagcctggagcacgaagcaggtcatagtc
tccgaattttatcagacagtgtgtatttttaccttttcactgttttagct
gtgactgttcttacttggatgtatttctgtgatctttccacccttaaaaa
gctttacatttgcaggtttacagatatacagagactggagactctccagt
tctatgaaagcccaaatgaaatcagagtccagattgtcgctaacatgtga
ggggctgtcgtatcactgctattctggttaggcatatggttattgttatt
tcccctcagagctttctatttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_152851066_152851802
seq2: B6Ng01-056I20.b_406_1126

seq1  TTTAAGATTGGACCTCACATCATAACCGTTCTCTACTTGAACTTGTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGATTGGACCTCACATCATAACCGTTCTCTACTTGAACTTGTAATC  50

seq1  CTCTTACTTGAGTCTCCCAATTAGTGGAATTGAACACAGGTGGAGCCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTTGAGTCTCCCAATTAGTGGAATTGAACACAGGTGGAGCCATG  100

seq1  CCTGCTTGTTGTTTTCTTTTAAATAAGTTTTCATTAAAAATTAAAGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGTTGTTTTCTTTTAAATAAGTTTTCATTAAAAATTAAAGGTTG  150

seq1  TTAAGCTATTTGCTACTGATAGATTCAGGAAGAGAGGGAGTAATTGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTATTTGCTACTGATAGATTCAGGAAGAGAGGGAGTAATTGCTCT  200

seq1  CAGATGTGTCCCCTCTGATGACTTTACTAGATTATAATTCAGAGTCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTGTCCCCTCTGATGACTTTACTAGATTATAATTCAGAGTCCCAA  250

seq1  TCCAGTAGTTGAAAAGATGACCCTGAAT-AAACAAAATAGGCCATTGAAA  299
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCAGTAGTTGAAAAGATGACCCTGAATAAAACAAAATAGGCCATTGAAA  300

seq1  TAAGCTATGATGACCATAAAATACAAAGACCAT-AAAGTACGCGACCCAT  348
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAGCTATGATGACCATAAAATACAAAGACCATAAAAGTACGCGACCCAT  350

seq1  AGATAAGATCTAATATACAGAATCAGACCACAAAGAAGTTCCTCGTGACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGATCTAATATACAGAATCAGACCACAAAGAAGTTCCTCGTGACA  400

seq1  TATAATAATTAAAACCATAAAATACAAAGAAAAGTTGAATGAAATAATGA  448
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATTATAATTAAAACCATAAAATACAAAGAAAAG-TGAATGAAATAATGA  449

seq1  AAACAGTTCAAGATATAAAACTAGAATTTAACAAAGAATTGGAATCACTG  498
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAACAGTTCAAGATATAAAACTAGAATTTAACAAAGATTTGGAATCACTG  499

seq1  AAGAGCACCTACCAAAAAAATATCTATAAATATAAAAATAGGAAATCGAA  548
      ||||||||||||| ||||||||||||| ||||| |||||||||||||| |
seq2  AAGAGCACCTACC-AAAAAATATCTAT-AATAT-AAAATAGGAAATCG-A  545

seq1  CAAAAGCATCAGGACTCTCACCAACAAAGTATGAAACATAGAAAAGAGAA  598
      | ||||||||||||||||||||||||||||||| ||||||||||||||| 
seq2  CTAAAGCATCAGGACTCTCACCAACAAAGTATG-AACATAGAAAAGAGA-  593

seq1  TTTCAGTCATTGAACAAATATACTTCACTCAAAGAAAATGTAAAGTCTAA  648
       || |||||||||||||||||||||||||| |||||| ||||||||||||
seq2  -TTTAGTCATTGAACAAATATACTTCACTC-AAGAAATTGTAAAGTCTAA  641

seq1  AATAATTCAGGCAGAAAACATCTAGGAAATCCAGGACACTACTAAAAGAC  698
      ||| ||||| |||| || |||||||| |||||| ||||||||||||||||
seq2  AAT-ATTCAAGCAG-AACCATCTAGG-AATCCA-GACACTACTAAAAGAC  687

seq1  CAAATATGTGAACAATAGGAATAGAGAAAGGAAAAGAAA  737
      ||   ||||| || |||||||||  |||||| |||||||
seq2  CA---ATGTGGACCATAGGAATA-TGAAAGG-AAAGAAA  721

seq1: chr5_136828645_136829690
seq2: B6Ng01-056I20.g_68_1091 (reverse)

seq1  AAAATATAGAAAGCTCCTGAGGGGAAAATAACAATTAACCATATGGCCTA  50
      |||| |||||||||| |||||||| ||||||||| ||||||||| |||| 
seq2  AAAAAATAGAAAGCT-CTGAGGGG-AAATAACAA-TAACCATAT-GCCT-  45

seq1  AACCAGAATTAGCCAGTGAATACGAACAGACCCCTTCCCATTGTTAGCGA  100
      |||||||| ||| ||||| ||||| ||||  ||| || || |||||||||
seq2  AACCAGAA-TAG-CAGTG-ATACG-ACAG--CCCCTCACA-TGTTAGCGA  88

seq1  CCAATTCTGGACTTCTGATTTCATTTGGGCTTTTCATAGGAACTGGAGAG  150
      |  | ||||||| ||||||||||||||||| ||||||| |||||||||||
seq2  C--AATCTGGAC-TCTGATTTCATTTGGGC-TTTCATA-GAACTGGAGAG  133

seq1  TCTCCAGTCTTCTGTATATTCTGTAAACCTTGCAAATTGTAAAGCTTTTT  200
      ||||||||| |||||||| |||||||||| |||||| |||||||| ||||
seq2  TCTCCAGTC-TCTGTATA-TCTGTAAACC-TGCAAA-TGTAAAGC-TTTT  178

seq1  TAAGGGTGGAAAGATCACAGAAATACATCCAAGTAAGAACAGTCACAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTGGAAAGATCACAGAAATACATCCAAGTAAGAACAGTCACAGCT  228

seq1  AAAACAGTGAAAAGGTAAAAATACACACTGTCTGATAAAATTCGGAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTGAAAAGGTAAAAATACACACTGTCTGATAAAATTCGGAGACT  278

seq1  ATGCCCTGCTTCGTGCTCCAGGCTGTTTGGAGAACATTCAGAACACTACG  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGCTTCGTGCTCCAGGCTGTTTGGAGAACATTCAGAACACTACG  328

seq1  GAGTTTTAATTTTCCCTCCTGACTCCTTAGGGTTATCTTTCTGAAGCTAG  400
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGTTTTAATTTTCCCTCATGACTCCTTAGGGTTATCTTTCTGAAGCTAG  378

seq1  GAGGGCACCAGTGTGGTTATTAGGGGGTTAATCCTCACTGTGTTGAGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCACCAGTGTGGTTATTAGGGGGTTAATCCTCACTGTGTTGAGTGC  428

seq1  CCCCAAGTCCTCACTCTGCTCATCCGAGCAGTAAATCTGTAGGCTCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGTCCTCACTCTGCTCATCCGAGCAGTAAATCTGTAGGCTCAGGA  478

seq1  GAGCAATGCGGCTGGTTGCAGGAGCGATGCCATAACATTCAGCATTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATGCGGCTGGTTGCAGGAGCGATGCCATAACATTCAGCATTAAAA  528

seq1  ATTCATTCTGCAGGCTCGCTTCAGAACTGGCGGTCTGGCGGGGAAATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTCTGCAGGCTCGCTTCAGAACTGGCGGTCTGGCGGGGAAATATG  578

seq1  AGACACCCCACTGTCTTTCTGGCAAATGGAGACATTCCTCAACATCTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCCACTGTCTTTCTGGCAAATGGAGACATTCCTCAACATCTAGC  628

seq1  ACCTTAGGAAGAGAATGAAAGGGCAAACAAGCCGTGAAGGAAAACAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGGAAGAGAATGAAAGGGCAAACAAGCCGTGAAGGAAAACAATGA  678

seq1  GCTCAATTATCTGGCTCTACACTGGCTTTCCTATAGGAAACATTTCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATTATCTGGCTCTACACTGGCTTTCCTATAGGAAACATTTCATTC  728

seq1  TGCTTCCTAAAAGTTTCTCAAGTGCGGGGGAGATGTAGACGGTGGATTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTAAAAGTTTCTCAAGTGCGGGGGAGATGTAGACGGTGGATTCC  778

seq1  AAGGGCTTGCTGACAGAGCTCCAGACCTCTGAGAGACCCTGTCTCAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTTGCTGACAGAGCTCCAGACCTCTGAGAGACCCTGTCTCAAAAA  828

seq1  CCAGTGTGGATGATTTCTGAGCAACTGAGGTAGTGTCCTCTGCCTCCACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGGATGATTTCTGAGCAACTGAGGTAGTGTCCTCTGCCTCCACA  878

seq1  AGCATGCACAAATACACATGCATGTGCCTACAAAGTTTCTTACATGCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCACAAATACACATGCATGTGCCTACAAAGTTTCTTACATGCTAT  928

seq1  CTTAGAATGAGGACCCTTTTTGTCCTTGGTGGGTATCTAAGTGTCCAGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATGAGGACCCTTTTTGTCCTTGGTGGGTATCTAAGTGTCCAGTA  978

seq1  TCTCTCTTTAAATAAAGAATGTAACCAGCCCAGAAGACCTGAATTC  1046
      ||||||||| ||||||||||||||||||||||||||||  ||||||
seq2  TCTCTCTTTCAATAAAGAATGTAACCAGCCCAGAAGACGAGAATTC  1024