BAC Information

Click to search

BAC

Clone NameB6Ng01-058F17
Chromosome5 (Build37)X (Build37)
Map Location 48,933,525 - 48,934,670107,330,739 - 107,331,296
singlet/doubletsingletsinglet
Overlap geneKcnip4
Upstream geneLOC100040865, LOC100040876, Slit2, 4933428G09Rik
Downstream geneLOC100041668, LOC100041659, EG433885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058F17.bB6Ng01-058F17.g
ACCDH879959DH879960
length1,131935
definitionDH879959|Mus musculus domesticus DNA, BAC clone: B6Ng01-058F17, 5' end.DH879960|Mus musculus domesticus DNA, BAC clone: B6Ng01-058F17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,933,525 - 48,934,670)(107,330,739 - 107,331,296)
sequence
gaattcaacagagttctactgcttggtcctatgacttgcgcttctaagac
atggcttcttcataggcagaacaaacttaatgatagtacttatttgactc
agctctttgagaaatgatttagtaaataatgtgctcagcatcttagcttt
tgctttaaaatagctcacataaattagttatggttagtagcggacataat
gttaatcattgaatactgtgacatattacaaatggaaataaatgcatgtt
ccccaatcaaggactggtcaaattaactatgacactccccaaaacaaaaa
atggcatgggacattctgatacaggagaaggcatattggtgtgggaaaca
ttttaagcccctgtacagtgagactgtaggttacctatcactcccctgaa
cacagactggggaagcaaatgcagaatgtgccgagtagttaactggaaat
tgtgaaactttaaattttctgttatcttaatttggtgctttatactttat
tttcatagtgtggtagttcataaagcataatagcatatcttgttttctca
ggaagtgggcagttttcataaaacaatgtaaaagtcctatcactagacac
ccaaaatattggccatatatgtcatttttttgttaaataattcagaagcc
tgagagtcaatgaaatgacttatttttacataatttcttttaaaacacca
tatcaaactgacaatcgttcctttaagcagtcttttagatgcccccttta
gagagttgggggacataaatggcagaagtaaaattatcagcatgcttttc
actgtgactgtttcttgagatatattagtgcctgtccatccatccttcat
taccttttcctgactctggcaagaccaggaaatttaatactcatttattt
tgtatttctttgtctattcagatcttattagtgatagttatgggcaatta
catgctttctccaacatctacattttcatgcgtagccagaggaaagacct
cctaggatcaacaacttcagctatcacagccattcctactagatttccag
aaagaactgaaatgagccactgtagtttctataacctcgagaaaaattga
aagatcctgagttgcaaccttctaatcgaga
gaattcttggtctttccaagacttttatcatgaatgggtgttggattttg
tgaaatgctttctccacaactaacaagatgatcatgtggtttctgtcttt
gagtttgtttatataatggattatgttgatggatttccatattttgaacc
atccctgcatacctggaatgaatcctacttgttcaggatggatgattgtt
ttgatgtgtttttggattccataagcgagaactttattgaggatttttgc
atctatattcttaagggaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttg
ggtagaataccttctgcttctattttgtggaatagtttgtgccgaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattactgactgattccatttct
ttaggggatatgggactgtttagatcgttaacttgatcctggtttaactt
tggtacctggtatctgtctagaaatttttgcatttcttccagattttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcattactcattttgttaat
tatcaaaccctgtgccctctagtgagtctggctaagggtttctctacctt
gttgattttctcaaagaaccagctcctcgttttgttgattctgtgatagt
tcttcttgtttccacttcgtgatttcgcccctgagttgattatttcctgc
cctctactcctcttgtgtgatttgcttcttttgtctagagctttatgtgt
gtgccaagctgctagttgtctgttctatttctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_48933525_48934670
seq2: B6Ng01-058F17.b_48_1178

seq1  GAATTCAACAGAGTTCTACTGCTTGGTCCTATGACTTGCGCTTCTAAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGAGTTCTACTGCTTGGTCCTATGACTTGCGCTTCTAAGAC  50

seq1  ATGGCTTCTTCATAGGCAGAACAAACTTAATGATAGTACTTATTTGACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCTTCATAGGCAGAACAAACTTAATGATAGTACTTATTTGACTC  100

seq1  AGCTCTTTGAGAAATGATTTAGTAAATAATGTGCTCAGCATCTTAGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGAGAAATGATTTAGTAAATAATGTGCTCAGCATCTTAGCTTT  150

seq1  TGCTTTAAAATAGCTCACATAAATTAGTTATGGTTAGTAGCGGACATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAAATAGCTCACATAAATTAGTTATGGTTAGTAGCGGACATAAT  200

seq1  GTTAATCATTGAATACTGTGACATATTACAAATGGAAATAAATGCATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCATTGAATACTGTGACATATTACAAATGGAAATAAATGCATGTT  250

seq1  CCCCAATCAAGGACTGGTCAAATTAACTATGACACTCCCCAAAACAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAATCAAGGACTGGTCAAATTAACTATGACACTCCCCAAAACAAAAA  300

seq1  ATGGCATGGGACATTCTGATACAGGAGAAGGCATATTGGTGTGGGAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGGGACATTCTGATACAGGAGAAGGCATATTGGTGTGGGAAACA  350

seq1  TTTTAAGCCCCTGTACAGTGAGACTGTAGGTTACCTATCACTCCCCTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGCCCCTGTACAGTGAGACTGTAGGTTACCTATCACTCCCCTGAA  400

seq1  CACAGACTGGGGAAGCAAATGCAGAATGTGCCGAGTAGTTAACTGGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTGGGGAAGCAAATGCAGAATGTGCCGAGTAGTTAACTGGAAAT  450

seq1  TGTGAAACTTTAAATTTTCTGTTATCTTAATTTGGTGCTTTATACTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACTTTAAATTTTCTGTTATCTTAATTTGGTGCTTTATACTTTAT  500

seq1  TTTCATAGTGTGGTAGTTCATAAAGCATAATAGCATATCTTGTTTTCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGTGTGGTAGTTCATAAAGCATAATAGCATATCTTGTTTTCTCA  550

seq1  GGAAGTGGGCAGTTTTCATAAAACAATGTAAAAGTCCTATCACTAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGGCAGTTTTCATAAAACAATGTAAAAGTCCTATCACTAGACAC  600

seq1  CCAAAATATTGGCCATATATGTCATTTTTTTGTTAAATAATTCAGAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATATTGGCCATATATGTCATTTTTTTGTTAAATAATTCAGAAGCC  650

seq1  TGAGAGTCAATGAAATGACTTATTTTTACATAATTTCTTTTAAAACACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTCAATGAAATGACTTATTTTTACATAATTTCTTTTAAAACACCA  700

seq1  TATCAAACTGACAATCGTTCCTTTAAGCAGTCTTTTAGATGCCCCCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAACTGACAATCGTTCCTTTAAGCAGTCTTTTAGATGCCCCCTTTA  750

seq1  GAGAGTTGGGGGACATAAATGGCAGAAGTAAAATTATCAGCATGCTTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTGGGGGACATAAATGGCAGAAGTAAAATTATCAGCATGCTTTTC  800

seq1  ACTGTGACTGTTTCTTGAGATATATTAGTGCCTGTCCATCCATCCTTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGACTGTTTCTTGAGATATATTAGTGCCTGTCCATCCATCCTTCAT  850

seq1  TACCTTTTCCTGACTCTGGCAAGACCAGGAAATTTAATACTCATTTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTCCTGACTCTGGCAAGACCAGGAAATTTAATACTCATTTATTT  900

seq1  TGTATTTCTTTGTCTATTCAGATCTTATTAGTGATAGTTTATGGGCAATT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTATTTCTTTGTCTATTCAGATCTTATTAGTGATAG-TTATGGGCAATT  949

seq1  ACATGCTTTCTCCAACATCTACATTTTCATGCGTAGCCAGAGGATAGACC  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACATGCTTTCTCCAACATCTACATTTTCATGCGTAGCCAGAGGAAAGACC  999

seq1  TCCTAGGATCAAACAACTTCAAGCTATCACAGCCATTCCCTACTAGATAT  1050
      |||||||||| ||||||||| |||||||||||||||| |||||||||| |
seq2  TCCTAGGATC-AACAACTTC-AGCTATCACAGCCATT-CCTACTAGATTT  1046

seq1  CTAGAGAGAAACTGAAATTGAGCCACTGTAGTTATCTATAACCATCAGAG  1100
      | ||| || |||||||| ||||||||||||||| ||||||||| || |||
seq2  CCAGAAAG-AACTGAAA-TGAGCCACTGTAGTT-TCTATAACC-TC-GAG  1091

seq1  AAAATTAGAAAGATCCCTGAAGTTGGCAACCTTTCTAACATCGAGA  1146
      |||| | ||||||| |||| |||| |||||| |||||  |||||||
seq2  AAAAATTGAAAGAT-CCTG-AGTT-GCAACC-TTCTA--ATCGAGA  1131

seq1: chrX_107330739_107331296
seq2: B6Ng01-058F17.g_464_1004 (reverse)

seq1  AAAAGAAACTAGAGAGAGCACAAACTAGCAGCTTGACAAAACAGCTAAAA  50
      |||||||| |||| | || || ||||||||||||| | | ||| |  |||
seq2  AAAAGAAA-TAGA-ACAG-AC-AACTAGCAGCTTGGC-ACACA-CATAAA  44

seq1  GCTCTAGAATAAAAGGAAGCAAATTCAGCCAAGAAGAGTAGATGGCAGGA  100
      ||||||||   ||| |||||||| |||  ||||| ||||||| |||||||
seq2  GCTCTAGA--CAAAAGAAGCAAA-TCACACAAGAGGAGTAGAGGGCAGGA  91

seq1  AATAATCAAACTCAGGAGTGAAAGCAACCAAGTGGAAACAAGAAGAACTA  150
      ||||||| |||||||| | |||| | || |||||||||||||||||||||
seq2  AATAATC-AACTCAGGGGCGAAATC-ACGAAGTGGAAACAAGAAGAACTA  139

seq1  TTCAAAGAATCAACCAAAAAAAGGAGCTGGTTCTTTGAGAAAACCAACAA  200
       ||| |||||||| |||||  |||||||||||||||||||||| ||||||
seq2  -TCACAGAATCAA-CAAAACGAGGAGCTGGTTCTTTGAGAAAATCAACAA  187

seq1  GATAGATAAACCCTTAGCCAGACACACTAGAGGGCACAGGGACAGCATAC  250
      | |||| |||||||||||||||| ||||||||||||||||    |  |  
seq2  GGTAGAGAAACCCTTAGCCAGACTCACTAGAGGGCACAGG----GTTTGA  233

seq1  TAATTAACAAAATCAGAAATGAAAAGGGAGACATAAAAACAGATCCTGAA  300
      ||||||||||||| || ||||||||||||||||||| |||||||||||||
seq2  TAATTAACAAAATGAGTAATGAAAAGGGAGACATAACAACAGATCCTGAA  283

seq1  GAAATCCAAAACACCATCAGATCTTTCTATAAAAGGCTATACTTAACAAA  350
      ||||||||||||||||||||||| ||||| ||||||||||||| ||||||
seq2  GAAATCCAAAACACCATCAGATCCTTCTACAAAAGGCTATACTCAACAAA  333

seq1  ACTGGAAAACCTGGAAAAAATGGACAAATTTCTAGACAGATACCAGGTAC  400
      ||||||||| |||||| ||||| | |||||||||||||||||||||||||
seq2  ACTGGAAAATCTGGAAGAAATGCAAAAATTTCTAGACAGATACCAGGTAC  383

seq1  CAAAGTTAAATCAGGATCAGGTTAATGATCTAAACAGTCCTATATCCCCT  450
      |||||||||| |||||||| ||||| |||||||||||||| |||||||||
seq2  CAAAGTTAAACCAGGATCAAGTTAACGATCTAAACAGTCCCATATCCCCT  433

seq1  ACAGAAATAGAAGCAGTCATTAATACTCTCCCAACCAAAAAAAGCCCAGG  500
      | |||||| ||| |||||| ||||| ||||||||||||||||||||||||
seq2  AAAGAAATGGAATCAGTCAGTAATAGTCTCCCAACCAAAAAAAGCCCAGG  483

seq1  ATCAGATGGGTTTAATGCAGATATCTATCAGAACTTCAAAGAAGAACTAA  550
      | |||||||||||| ||||||  ||||||||| |||||||||||| ||||
seq2  ACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAA  533

seq1  TTCCAGTT  558
      ||||||||
seq2  TTCCAGTT  541