BAC Information

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BAC

Clone NameB6Ng01-060B16
ChromosomeX (Build37)X (Build37)
Map Location 127,348,311 - 127,349,4169,244,096 - 9,244,442
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDiap2, LOC100040092, LOC665773
Downstream geneLOC665799, LOC670449
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060B16.bB6Ng01-060B16.g
ACCDH881180DH881181
length1,107949
definitionDH881180|Mus musculus domesticus DNA, BAC clone: B6Ng01-060B16, 5' end.DH881181|Mus musculus domesticus DNA, BAC clone: B6Ng01-060B16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(127,348,311 - 127,349,416)(9,244,096 - 9,244,442)
sequence
gaattcctataagaattaccacatctgaaacaaaatatcaaactttacct
ggaactcttttcctactatactttttcactcgataaaaaatatgaagtat
ttcatatatacagtaggattcagcaagtatcttacaatgggttgctctgt
gtgcaagaaaagaccccaaaagaagtgtgagatgacaagttttggattgg
aggtatcaatactatagctgaatgcaatggcgttgcatcttggtaagtac
aaagctaaaaacaatcacaactaagaaataaaacagtaaagaataattta
ttagaacctcagtagaaaagaagagcaaggaagttatttccaaaataatg
accttcccagagaaaggaatcctagagattttatgtatatatattgtcaa
gtggaagcactttaaggatgggcatatttctgagcatattcagtcagtta
aggaacatatttctaaacatcctaggtttaagttcatgattcaagaacaa
gactgtgaaaatgctttttgtcatacttagctcatgttcatgccacacat
gttcaaaagtgacttacacagtttgtatcttaatgttggcaaacaggaac
tcctataagcatgttcagttctatacagtaggttttagctgaaaattgag
gatactttgaagatatattaatgtaggaatttgtcccaaaatgttattgt
ttatcttaatcacatcctggtcctatatgttatatgtagatacttgtgtt
ggctaattttatgttggcttgacataagctagagacattttggaagaggg
atcttcaatgaaacaatgttctaaacatatttgcgggcaagcctgtggtg
cattttcttgattgatgattgatgtagaagggcccagctcattgtataca
atttccatccctggacatttgggtcatggatgctataagaaatcagcctg
agcaagccacaaggaataagccagtaaacaaaacagtgtttctttcatgg
ctttctgatgcaatttctgcctccagtattgtcctgattctctagatgat
gaactgactacagctgtaagtgaaagaaaaccttttcctcccagattggc
ttttgtc
gaattcaaatgacaataaaaatgattacatatccaggaaaaagactaaca
ttaaataaaataggaaagaatgtagaaatgcctagaatttatactcactg
ctggtgagaatataaaattgcccaggtatttgacagtttgacaatctctt
taaagtaaaactttcatctaccactcttaatttatttagagaaataaaaa
aagctcatgttaagacttctgtataaatatgtatagtagtcttattaatt
gtgtctacaaacagaaaacaacttaaatacatctcaacttgggaattgat
gaacaaatttcaacacgtctgtacgatgtgttatatttttcagccataag
agaattagctactgacacgtgcaatgatattagtgagtctctaaaacaaa
attatcttaattatttttctgttgctatgaggaggcacaatgatcaaggc
aacttatggtggaaaaaccatttgattgagggtttgtttaaagtttcaga
gtgtagactatgatcatcatgggggcagggagcatggcaataggaaggca
ggcattgtactagagcagtaaatgagagcttactttgaaaattgcagtgt
gtgagagaaagggagactgagcctaaagtaggcttttgaaacctcaaagc
ccaccccagtgacacacctcctctaacgaggctatgtctattccaacaag
actacactcctttttttttttaaagattttatttattttatatatgagta
cactatagctgtctttaaatacaccagaagaaggtgtcagatcccatgtg
gttgctgagaattgaactcaggacctctggaagagcagtcagtgctctta
accactgagccatctctccagcccaagactacacttttttttttaattta
tttttttaattaggtatttcttcatttacatttcaaatgctatcccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_127348311_127349416
seq2: B6Ng01-060B16.b_44_1150 (reverse)

seq1  GACAAAAGCAACTTGGGGAGG-AAAGGGTTTCTTTCACCTTACAGCTTGT  49
      ||||||||| | |  |||||| ||||| ||||||||| |||||||| |||
seq2  GACAAAAGCCAATCTGGGAGGAAAAGGTTTTCTTTCA-CTTACAGC-TGT  48

seq1  AGTCAGTTCATCATCTAGGGAATCAGGGCAATAACTTGGAGGCAGAAATT  99
      |||||||||||||||||| |||||||| |||||   ||||||||||||||
seq2  AGTCAGTTCATCATCTAGAGAATCAGGACAATA--CTGGAGGCAGAAATT  96

seq1  GCATCAG-AAGCCATGAAAG-AACACTGTTTATGTTTACTGGCTTATTCC  147
      ||||||| |||||||||||| |||||||||| ||||||||||||||||||
seq2  GCATCAGAAAGCCATGAAAGAAACACTGTTT-TGTTTACTGGCTTATTCC  145

seq1  TTGTGGCTTGCTCAGGCTGATTTCTTATAGCATCCATGA-CCAATTGTCC  196
      ||||||||||||||||||||||||||||||||||||||| |||| |||||
seq2  TTGTGGCTTGCTCAGGCTGATTTCTTATAGCATCCATGACCCAAATGTCC  195

seq1  AGGGATGG-AATTGTATACAATGAGCTGGGCCCTTCTACATCAATCATCA  245
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGGAAATTGTATACAATGAGCTGGGCCCTTCTACATCAATCATCA  245

seq1  GTCAAGAAAATGCACCACAGGCTTGCCCGC-AATATGTTTAGAACATTGT  294
       ||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATCAAGAAAATGCACCACAGGCTTGCCCGCAAATATGTTTAGAACATTGT  295

seq1  TTCATTGAAGATCCCTCTTCCAAAATGTCTCTAGCTTATGTCAAGCCAAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGAAGATCCCTCTTCCAAAATGTCTCTAGCTTATGTCAAGCCAAC  345

seq1  ATAAAATTAGCCAACACAAGTATCTACATATAACATATAGGACCAGGATG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTAGCCAACACAAGTATCTACATATAACATATAGGACCAGGATG  395

seq1  TGATTAAGATAAACAATAACATTTTGGGACAAATTCCTACATTAATATAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTAAGATAAACAATAACATTTTGGGACAAATTCCTACATTAATATAT  445

seq1  CTTCAAAGTATCCTCAATTTTCAGCTAAAACCTACTGTATAGAACTGAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGTATCCTCAATTTTCAGCTAAAACCTACTGTATAGAACTGAAC  495

seq1  ATGCTTATAGGAGTTCCTGTTTGCCAACATTAAGATACAAACTGTGTAAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTATAGGAGTTCCTGTTTGCCAACATTAAGATACAAACTGTGTAAG  545

seq1  TCACTTTTGAACATGTGTGGCATGAACATGAGCTAAGTATGACAAAAAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTGAACATGTGTGGCATGAACATGAGCTAAGTATGACAAAAAGC  595

seq1  ATTTTCACAGTCTTGTTCTTGAATCATGAACTTAAACCTAGGATGTTTAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCACAGTCTTGTTCTTGAATCATGAACTTAAACCTAGGATGTTTAG  645

seq1  AAATATGTTCCTTAACTGACTGAATATGCTCAGAAATATGCCCATCCTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTTCCTTAACTGACTGAATATGCTCAGAAATATGCCCATCCTTA  695

seq1  AAGTGCTTCCACTTGACAATATATATACATAAAATCTCTAGGATTCCTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTTCCACTTGACAATATATATACATAAAATCTCTAGGATTCCTTT  745

seq1  CTCTGGGAAGGTCATTATTTTGGAAATAACTTCCTTGCTCTTCTTTTCTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGAAGGTCATTATTTTGGAAATAACTTCCTTGCTCTTCTTTTCTA  795

seq1  CTGAGGTTCTAATAAATTATTCTTTACTGTTTTATTTCTTAGTTGTGATT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTCTAATAAATTATTCTTTACTGTTTTATTTCTTAGTTGTGATT  845

seq1  GTTTTTAGCTTTGTACTTACCAAGATGCAACGCCATTGCATTCAGCTATA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAGCTTTGTACTTACCAAGATGCAACGCCATTGCATTCAGCTATA  895

seq1  GTATTGATACCTCCAATCCAAAACTTGTCATCTCACACTTCTTTTGGGGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGATACCTCCAATCCAAAACTTGTCATCTCACACTTCTTTTGGGGT  945

seq1  CTTTTCTTGCACACAGAGCAACCCATTGTAAGATACTTGCTGAATCCTAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTGCACACAGAGCAACCCATTGTAAGATACTTGCTGAATCCTAC  995

seq1  TGTATATATGAAATACTTCATATTTTTTATCGAGTGAAAAAGTATAGTAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATGAAATACTTCATATTTTTTATCGAGTGAAAAAGTATAGTAG  1045

seq1  GAAAAGAGTTCCAGGTAAAGTTTGATATTTTGTTTCAGATGTGGTAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGTTCCAGGTAAAGTTTGATATTTTGTTTCAGATGTGGTAATTC  1095

seq1  TTATAGGAATTC  1106
      ||||||||||||
seq2  TTATAGGAATTC  1107

seq1: chrX_9244096_9244442
seq2: B6Ng01-060B16.g_913_1005 (reverse)

seq1  ATTTGAAATGTAAATGAAGAAAATACCTAATTAAAAAAATAACCTGATTA  50
      ||||||||||||||||||| ||||||||||||||||||||          
seq2  ATTTGAAATGTAAATGAAG-AAATACCTAATTAAAAAAAT----------  39

seq1  ATGAAATTGCAAAAAAAAAAGGTGAAAAAAAAAAAGAATCT---------  91
         |||||   ||||||||| |||            | |||         
seq2  ---AAATT---AAAAAAAAAAGTG-----------TAGTCTTGGGCTGGA  72

seq1  -AGATGGTACCATTTTTTCAAAGAGACTTTAAAATAGCTGTTTAATGTAT  140
       ||||||  |  |  ||   ||||                          
seq2  GAGATGGCTCAGTGGTT---AAGA--------------------------  93

seq1  TCAAAAATATAAAAGAGAAGACTGACCATTTTATTCAACAACTGGAAACT  190
                                                        
seq2  --------------------------------------------------  93

seq1  ATTTTAAAAGTCCCAATAGAATTTCCAGAAGTAGAACTACACTAACAACA  240
                                                        
seq2  --------------------------------------------------  93

seq1  AATAAACACAACTCCAGTTGAAGCAAAGTTGGAGGTTTAACTAGAGAATT  290
                                                        
seq2  --------------------------------------------------  93

seq1  TTTTTGGGGGGGTGGGGAGTTGTTCTAGGGGTTGGACAGACAGTTCAGTG  340
                                                        
seq2  --------------------------------------------------  93

seq1  GTTAAGA  347
             
seq2  -------  93