BAC Information

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BAC

Clone NameB6Ng01-061I01
ChromosomeX (Build37)
Map Location 127,685,033 - 127,788,193
singlet/doubletdoublet
Overlap geneLOC665799
Upstream geneDiap2, LOC100040092, LOC665773
Downstream geneLOC670449, LOC245600, EG631264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061I01.bB6Ng01-061I01.g
ACCDH882162DH882163
length1,0301,051
definitionDH882162|Mus musculus domesticus DNA, BAC clone: B6Ng01-061I01, 5' end.DH882163|Mus musculus domesticus DNA, BAC clone: B6Ng01-061I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,685,033 - 127,685,586)(127,787,134 - 127,788,193)
sequence
gaattctaaggggaaaggatgtcaaaatgtagcttcccgctcttctttaa
gtctattttaaagctccttttacaggaagaaattaatacttggtactgta
aacttggtcaatgactgtgaaagtcataggctgtaaagtgtgtggtggag
ggtcttattttatattgctaaatggaatactgcaaaacttccaaatattt
atgtttgtatccatagagttgttctcagcattccttggtaagagaaactt
ccattttaatggggaatagttaaagaagagactcatagctggtcaaattg
caataaataaggtgtcagagtttgtttctatgttgtgactaaacactgac
catgaccaatttgtacatgaaagcatttatttggcctagaggttacagtc
tatcattgagataagtcagggaagaaatttaaataggatcagaagcaggg
accttgtggggaaaaaatctacttactgccttgtcctcaatggcctgttt
agtttacttagttaaccttcccaggggtgtgaccttctgaagtaggattg
gctctcccacatccattcttaatcaagaaaatgccccacagacatgccca
taggcatttcctcaattgcaggcaattcctcaattgagcttatctcttcc
cacacatgcataagtttgtatcaagttgacaaaattgacatacacatagg
gtgtctatacagctccttacaaggctcaacaaatatctgtgaagaaagcc
cacaaaaagtataagagtataaatatggacaagaatgccatatattgtat
tctagtcataatgtggcttttgcagcaatgaattaacagaagcaatgatt
atcgacacatggcctgtacaagatcaagctagttaatattttagtatgta
ttgtggattgggctaatacttgtattatattaattgggtccctcaaattg
aacgagaatccacatatccgtaagtaggatgctgagggtccctgaccctg
gttggttttgatggtaggtttcaggaggtc
gaattcctcagtcagaatattctaaataacaagtttcaggccagctgggg
ctatatagtgaaactctgtcttaaaaaaaaaaaaaagaatgtaaacttta
ttcttgaaagtcataaatgctgtgcattttggattttcaatgctgtttcc
tgataattagccttatttatatataaaaatggcagatgtaatgaaaaata
tatcttggttatcttcagatcccacgtatgagtgtagtcctataatataa
taagggagctaaaatattcccatcatatcataggcatagtattacaattc
agttcactattcttgtgcttatgttgaagttaaaataagccaactcacct
gaccagctttctaaagattagcatacataattctgcattgtacataccac
ttggtaataagcactatgctatttttactatattttaatgattatttttg
gatagcatttatttcatttataaaaatacttataaaataatattatttta
aaactgaagtagcctcatatgcattatagttttatcatttcttgactaaa
ttacaaggccaagataagtagctgatgtatatgatctagtttaggcaact
atactctgtgatgttcatagagtaacagagttgcttgatgacaacttcct
ccaaatatatgtctatcattaaataatacatgactctgtacatgtaaata
agctataatcagttatgtcactgttgctgataacaacaattaatatgtac
atatcaaaagtaaaaaggcattaaaatataggtctttttcagtcttttga
tatttattaatctcttagtattgttagatattttattaaatgataagggt
ttatagtttggtacaatatgtttaacactgcaatatttcttgatggatat
ttccttggccagtattaagtgacattctatattgcatattcattttggtt
tgaagtcattttgtagtattaaaatagcattatggtttacttcctggttt
cggttctagacttcttttcacaattttataatatagtgcctgtcttaggg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_127685033_127685586
seq2: B6Ng01-061I01.b_45_598

seq1  GAATTCTAAGGGGAAAGGATGTCAAAATGTAGCTTCCCGCTCTTCTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGGGAAAGGATGTCAAAATGTAGCTTCCCGCTCTTCTTTAA  50

seq1  GTCTATTTTAAAGCTCCTTTTACAGGAAGAAATTAATACTTGGTACTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTTTAAAGCTCCTTTTACAGGAAGAAATTAATACTTGGTACTGTA  100

seq1  AACTTGGTCAATGACTGTGAAAGTCATAGGCTGTAAAGTGTGTGGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGTCAATGACTGTGAAAGTCATAGGCTGTAAAGTGTGTGGTGGAG  150

seq1  GGTCTTATTTTATATTGCTAAATGGAATACTGCAAAACTTCCAAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTATTTTATATTGCTAAATGGAATACTGCAAAACTTCCAAATATTT  200

seq1  ATGTTTGTATCCATAGAGTTGTTCTCAGCATTCCTTGGTAAGAGAAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTATCCATAGAGTTGTTCTCAGCATTCCTTGGTAAGAGAAACTT  250

seq1  CCATTTTAATGGGGAATAGTTAAAGAAGAGACTCATAGCTGGTCAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTAATGGGGAATAGTTAAAGAAGAGACTCATAGCTGGTCAAATTG  300

seq1  CAATAAATAAGGTGTCAGAGTTTGTTTCTATGTTGTGACTAAACACTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATAAGGTGTCAGAGTTTGTTTCTATGTTGTGACTAAACACTGAC  350

seq1  CATGACCAATTTGTACATGAAAGCATTTATTTGGCCTAGAGGTTACAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAATTTGTACATGAAAGCATTTATTTGGCCTAGAGGTTACAGTC  400

seq1  TATCATTGAGATAAGTCAGGGAAGAAATTTAAATAGGATCAGAAGCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTGAGATAAGTCAGGGAAGAAATTTAAATAGGATCAGAAGCAGGG  450

seq1  ACCTTGTGGGGAAAAAATCTACTTACTGCCTTGTCCTCAATGGCCTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTGGGGAAAAAATCTACTTACTGCCTTGTCCTCAATGGCCTGTTT  500

seq1  AGTTTACTTAGTTAACCTTCCCAGGGGTGTGACCTTCTGAAGTAGGATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTACTTAGTTAACCTTCCCAGGGGTGTGACCTTCTGAAGTAGGATTG  550

seq1  GCTC  554
      ||||
seq2  GCTC  554

seq1: chrX_127787134_127788193
seq2: B6Ng01-061I01.g_68_1118 (reverse)

seq1  CCCCAAAGACAGGCACTATATTTAATAAGATTGTGAAAAGAAGTCTAAGA  50
      |||| |||||||||||||||||  |||| ||||||||||||||||| |||
seq2  CCCCTAAGACAGGCACTATATT--ATAAAATTGTGAAAAGAAGTCT-AGA  47

seq1  AACGAAACCAGGAAGTAAACAATAATTGCTATTTTAATATCTGACAAAAT  100
      | |||||||||||||||||| |||| ||||||||||||| || |||||||
seq2  ACCGAAACCAGGAAGTAAACCATAA-TGCTATTTTAATA-CT-ACAAAAT  94

seq1  GACTTCAAACCAAAATGAATAATGCAATATAGAATGTCACTTAATACTGG  150
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GACTTCAAACCAAAATGAAT-ATGCAATATAGAATGTCACTTAATACTGG  143

seq1  CCAAGGAAATAATCCATCAAGGAAATATTGCAGTGTTAAACATATTTGTA  200
      |||||||||| ||||||||| ||||||||||||||||||||||| |||||
seq2  CCAAGGAAAT-ATCCATCAA-GAAATATTGCAGTGTTAAACATA-TTGTA  190

seq1  CCAAACTATAAACCCTTATCATTTAATAAAATATCTAACAATACTAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTATAAACCCTTATCATTTAATAAAATATCTAACAATACTAAGAG  240

seq1  ATTAATAAATATCAAAAGACTGAAAAAGACCTATATTTTAATGCCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAAATATCAAAAGACTGAAAAAGACCTATATTTTAATGCCTTTTT  290

seq1  ACTTTTGATATGTACATATTAATTGTTGTTATCAGCAACAGTGACATAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGATATGTACATATTAATTGTTGTTATCAGCAACAGTGACATAAC  340

seq1  TGATTATAGCTTATTTACATGTACAGAGTCATGTATTATTTAATGATAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTATAGCTTATTTACATGTACAGAGTCATGTATTATTTAATGATAGA  390

seq1  CATATATTTGGAGGAAGTTGTCATCAAGCAACTCTGTTACTCTATGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTTGGAGGAAGTTGTCATCAAGCAACTCTGTTACTCTATGAACA  440

seq1  TCACAGAGTATAGTTGCCTAAACTAGATCATATACATCAGCTACTTATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGTATAGTTGCCTAAACTAGATCATATACATCAGCTACTTATCT  490

seq1  TGGCCTTGTAATTTAGTCAAGAAATGATAAAACTATAATGCATATGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGTAATTTAGTCAAGAAATGATAAAACTATAATGCATATGAGGC  540

seq1  TACTTCAGTTTTAAAATAATATTATTTTATAAGTATTTTTATAAATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGTTTTAAAATAATATTATTTTATAAGTATTTTTATAAATGAAA  590

seq1  TAAATGCTATCCAAAAATAATCATTAAAATATAGTAAAAATAGCATAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTATCCAAAAATAATCATTAAAATATAGTAAAAATAGCATAGTG  640

seq1  CTTATTACCAAGTGGTATGTACAATGCAGAATTATGTATGCTAATCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTACCAAGTGGTATGTACAATGCAGAATTATGTATGCTAATCTTTA  690

seq1  GAAAGCTGGTCAGGTGAGTTGGCTTATTTTAACTTCAACATAAGCACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTGGTCAGGTGAGTTGGCTTATTTTAACTTCAACATAAGCACAAG  740

seq1  AATAGTGAACTGAATTGTAATACTATGCCTATGATATGATGGGAATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGAACTGAATTGTAATACTATGCCTATGATATGATGGGAATATTT  790

seq1  TAGCTCCCTTATTATATTATAGGACTACACTCATACGTGGGATCTGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCCTTATTATATTATAGGACTACACTCATACGTGGGATCTGAAGA  840

seq1  TAACCAAGATATATTTTTCATTACATCTGCCATTTTTATATATAAATAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAGATATATTTTTCATTACATCTGCCATTTTTATATATAAATAAG  890

seq1  GCTAATTATCAGGAAACAGCATTGAAAATCCAAAATGCACAGCATTTATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTATCAGGAAACAGCATTGAAAATCCAAAATGCACAGCATTTATG  940

seq1  ACTTTCAAGAATAAAGTTTACATTC-TTTTTTTTTTTTTAAGACAGAGTT  999
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACTTTCAAGAATAAAGTTTACATTCTTTTTTTTTTTTTTAAGACAGAGTT  990

seq1  TCACTATATAGCCCCAGCTGGCCTGAAACTTGTTATTTAGAATATTCTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATATAGCCCCAGCTGGCCTGAAACTTGTTATTTAGAATATTCTGA  1040

seq1  CTGAGGAATTC  1060
      |||||||||||
seq2  CTGAGGAATTC  1051