BAC Information

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BAC

Clone NameB6Ng01-061M05
Chromosome17 (Build37)X (Build37)
Map Location 81,420,026 - 81,420,72776,640,354 - 76,641,480
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697, C230072F16Rik, LOC675572, EG668830, Tmem178
Downstream geneThumpd2, LOC100043700, LOC100043704, Slc8a1, EG668832, LOC100043707
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061M05.bB6Ng01-061M05.g
ACCDH882352DH882353
length1,0291,103
definitionDH882352|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M05, 5' end.DH882353|Mus musculus domesticus DNA, BAC clone: B6Ng01-061M05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,420,026 - 81,420,727)(76,640,354 - 76,641,480)
sequence
gaattctttgctctgtaaaacaataaaactcagtgaaattgctcccacac
tagagcatagaatttaaagtaactggggtaaatctgtgttctggagccat
ggtcactcaaagtggctccaagataaacgcttttatttcttttaagatga
agctgagagttttgcataaacaggggccatggctgggctctgcacttctt
tggccctaacagaagagacaaagatggagccaccaccaaggaggaaatgc
aagagtgtggttggctggaagcaaatggacaccagctatggagaaggagg
gagccattctgcccatgcagctaacggaccacatgggaaagggatgggaa
tcaatcactggatttgccaacaaggtcactcactggtggctttggcacta
gaagttttgataagaggagggaaataggggctggagagagggcacaatgg
tttcgagcactaactgctatcattgtagaacctaggttcagttcccagta
tctacacagtggctcataacatctaaaactccagtttcaaggaatctgat
accttctcttgaccttcaaagtcacagcatatatacgatgcacatacaaa
tatggaggtgacacacccatacacataaaataaaactttaaaaaaaattt
ttttaaagaagaggaaacaaaaccagactgcagtgggatcaagagaaaat
agaagagaagatggagtcggtgaacccagacaacaggtacaaccagactt
taaaaatggaagcaatagatgcagaaaatgacttataatggatgcagaat
caggaaataactgttttaattggggaaagtaggaagtgtaactatacata
catgtgtacctacatatgtagatatataaaatactaaaacctatataaca
ttacatatgttattatataagtttatacaatgttaaagcatcctaggaga
gctgagaaattgatgaacggggaaatcctgggcagcatctctgaataagg
gatgagatgttgtccacagcagagacttc
gaattcatatcttctctttctcagccaattttatgtattcctttttatat
ttatttgggggtatagttgaatattatactttctagtcttctagagttta
tcttcaaagatatgaccttgtgatgtttattttaatcttagtatctttaa
ccattactatacaagagtatagactcttgatttgaatggtggtttctaag
tatttagttaattattagaaaatttcaagttttctttctcaaaatatata
ttgttcagtttagaaaaaataaaaataaggcctccaattttcatgaaaaa
gaattggaacatcaccccttgtttaaatgcattttttttaaattcaattt
tcattagaaagaattagaacaccacctcttgtttaattgcattttttaaa
attctttttcagagcaaaataaatatgtaaagagttttcttaggaatgtt
gattttagtaattctctaaatgttatgttagtcaagtatgttagctagta
actatcattgcactggagatttttgcctagaaactaaaacatcatagatt
agaagtattttgtttaaattcaggagcaaacagtctcaacaaatttctgt
gcttcaattttttgcatgtcatagttttatctctttatacttcttaattt
ttcctcttattattctcactttccctgtggttatgcttatatgtgtcata
ttcatatgtgtgtatacatgtgtgtaccctaatgtgtgtttggaagtcag
gaaacaactgtgtgatttggtcaactatttctgttgtatggttcccagag
atgaaactcaattttgcaggcttggctgcagatatctttactttttgatc
atctaaccaacccttgtttcttcttagcaaaagtaatgaatatgtactaa
gaagatgctaagtgattgagcatgtattgtcaagcataggactttgcgga
ttaagataggtaattctataataatttaatgatttcttttttcactgtgg
tttgtgagaggctagacccagtatttaaataccttagtaatataggtaga
tccaggtgcagtttttgtttacaatatcgatactttagaaaatggtgata
aat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_81420026_81420727
seq2: B6Ng01-061M05.b_46_747 (reverse)

seq1  CTATTTTCTCTTGATCCCACTGCAGTCTGGTTTTGTTTCCTCTTCTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCTCTTGATCCCACTGCAGTCTGGTTTTGTTTCCTCTTCTTTAA  50

seq1  AAAAATTTTTTTTAAAGTTTTATTTTATGTGTATGGGTGTGTCACCTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTTTTTAAAGTTTTATTTTATGTGTATGGGTGTGTCACCTCCA  100

seq1  TATTTGTATGTGCATCGTATATATGCTGTGACTTTGAAGGTCAAGAGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTATGTGCATCGTATATATGCTGTGACTTTGAAGGTCAAGAGAAG  150

seq1  GTATCAGATTCCTTGAAACTGGAGTTTTAGATGTTATGAGCCACTGTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGATTCCTTGAAACTGGAGTTTTAGATGTTATGAGCCACTGTGTA  200

seq1  GATACTGGGAACTGAACCTAGGTTCTACAATGATAGCAGTTAGTGCTCGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGGGAACTGAACCTAGGTTCTACAATGATAGCAGTTAGTGCTCGA  250

seq1  AACCATTGTGCCCTCTCTCCAGCCCCTATTTCCCTCCTCTTATCAAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTGTGCCCTCTCTCCAGCCCCTATTTCCCTCCTCTTATCAAAACT  300

seq1  TCTAGTGCCAAAGCCACCAGTGAGTGACCTTGTTGGCAAATCCAGTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGCCAAAGCCACCAGTGAGTGACCTTGTTGGCAAATCCAGTGATT  350

seq1  GATTCCCATCCCTTTCCCATGTGGTCCGTTAGCTGCATGGGCAGAATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCATCCCTTTCCCATGTGGTCCGTTAGCTGCATGGGCAGAATGGC  400

seq1  TCCCTCCTTCTCCATAGCTGGTGTCCATTTGCTTCCAGCCAACCACACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCTTCTCCATAGCTGGTGTCCATTTGCTTCCAGCCAACCACACTC  450

seq1  TTGCATTTCCTCCTTGGTGGTGGCTCCATCTTTGTCTCTTCTGTTAGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTCCTCCTTGGTGGTGGCTCCATCTTTGTCTCTTCTGTTAGGGC  500

seq1  CAAAGAAGTGCAGAGCCCAGCCATGGCCCCTGTTTATGCAAAACTCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGTGCAGAGCCCAGCCATGGCCCCTGTTTATGCAAAACTCTCAG  550

seq1  CTTCATCTTAAAAGAAATAAAAGCGTTTATCTTGGAGCCACTTTGAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTTAAAAGAAATAAAAGCGTTTATCTTGGAGCCACTTTGAGTGA  600

seq1  CCATGGCTCCAGAACACAGATTTACCCCAGTTACTTTAAATTCTATGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCTCCAGAACACAGATTTACCCCAGTTACTTTAAATTCTATGCTC  650

seq1  TAGTGTGGGAGCAATTTCACTGAGTTTTATTGTTTTACAGAGCAAAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGGGAGCAATTTCACTGAGTTTTATTGTTTTACAGAGCAAAGAAT  700

seq1  TC  702
      ||
seq2  TC  702

seq1: chrX_76640354_76641480
seq2: B6Ng01-061M05.g_68_1170 (reverse)

seq1  ATTTAATCATCATTTTCTTAAAAGTATCTGATATTTGTAAAAACAAAAAC  50
      |||| |||| ||||||||  |||||||| |||| ||||  ||||||||||
seq2  ATTT-ATCACCATTTTCT--AAAGTATC-GATA-TTGT--AAACAAAAAC  43

seq1  TTGCACCTTGGTATCTTACCTATAATTTACCTAAGGTATTTAAATACCTG  100
       |||||||  | ||| ||||||||  ||| |||||||||||||||| |||
seq2  -TGCACCT--GGATC-TACCTATA--TTA-CTAAGGTATTTAAATA-CTG  85

seq1  GGTTCTAGCCCTTCCTTCACAAA-CACAGTGAAAAAAGAAATCATTTAAA  149
      || |||||||  ||  ||||||| |||||||||||||||||||| |||||
seq2  GG-TCTAGCC--TC--TCACAAACCACAGTGAAAAAAGAAATCA-TTAAA  129

seq1  TTATTATAGAATTAACCTATTCCTTAATCCGCAAAGTCCTATGCTTGACA  199
      ||||||||||||| ||||||  ||||||||||||||||||||||||||| 
seq2  TTATTATAGAATT-ACCTAT--CTTAATCCGCAAAGTCCTATGCTTGAC-  175

seq1  AATACATGCTCAATCACTTAGCATCTTCTTAGTACATATTCATTACTTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATGCTCAATCACTTAGCATCTTCTTAGTACATATTCATTACTTTT  225

seq1  GCTAAGAAGAAACAAGGGTTGGTTAGATGATCAAAAAGTAAAGATATCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAAGAAACAAGGGTTGGTTAGATGATCAAAAAGTAAAGATATCTG  275

seq1  CAGCCAAGCCTGCAAAATTGAGTTTCATCTCTGGGAACCATACAACAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAGCCTGCAAAATTGAGTTTCATCTCTGGGAACCATACAACAGAA  325

seq1  ATAGTTGACCAAATCACACAGTTGTTTCCTGACTTCCAAACACACATTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTGACCAAATCACACAGTTGTTTCCTGACTTCCAAACACACATTAG  375

seq1  GGTACACACATGTATACACACATATGAATATGACACATATAAGCATAACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACACACATGTATACACACATATGAATATGACACATATAAGCATAACC  425

seq1  ACAGGGAAAGTGAGAATAATAAGAGGAAAAATTAAGAAGTATAAAGAGAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAAGTGAGAATAATAAGAGGAAAAATTAAGAAGTATAAAGAGAT  475

seq1  AAAACTATGACATGCAAAAAATTGAAGCACAGAAATTTGTTGAGACTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTATGACATGCAAAAAATTGAAGCACAGAAATTTGTTGAGACTGTT  525

seq1  TGCTCCTGAATTTAAACAAAATACTTCTAATCTATGATGTTTTAGTTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTGAATTTAAACAAAATACTTCTAATCTATGATGTTTTAGTTTCT  575

seq1  AGGCAAAAATCTCCAGTGCAATGATAGTTACTAGCTAACATACTTGACTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAATCTCCAGTGCAATGATAGTTACTAGCTAACATACTTGACTA  625

seq1  ACATAACATTTAGAGAATTACTAAAATCAACATTCCTAAGAAAACTCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACATTTAGAGAATTACTAAAATCAACATTCCTAAGAAAACTCTTT  675

seq1  ACATATTTATTTTGCTCTGAAAAAGAATTTTAAAAAATGCAATTAAACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTATTTTGCTCTGAAAAAGAATTTTAAAAAATGCAATTAAACAA  725

seq1  GAGGTGGTGTTCTAATTCTTTCTAATGAAAATTGAATTTAAAAAAAATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGTGTTCTAATTCTTTCTAATGAAAATTGAATTTAAAAAAAATGC  775

seq1  ATTTAAACAAGGGGTGATGTTCCAATTCTTTTTCATGAAAATTGGAGGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACAAGGGGTGATGTTCCAATTCTTTTTCATGAAAATTGGAGGCC  825

seq1  TTATTTTTATTTTTTCTAAACTGAACAATATATATTTTGAGAAAGAAAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTATTTTTTCTAAACTGAACAATATATATTTTGAGAAAGAAAAC  875

seq1  TTGAAATTTTCTAATAATTAACTAAATACTTAGAAACCACCATTCAAATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTTTCTAATAATTAACTAAATACTTAGAAACCACCATTCAAATC  925

seq1  AAGAGTCTATACTCTTGTATAGTAATGGTTAAAGATACTAAGATTAAAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCTATACTCTTGTATAGTAATGGTTAAAGATACTAAGATTAAAAT  975

seq1  AAACATCACAAGGTCATATCTTTGAAGATAAACTCTAGAAGACTAGAAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCACAAGGTCATATCTTTGAAGATAAACTCTAGAAGACTAGAAAG  1025

seq1  TATAATATTCAACTATACCCCCAAATAAATATAAAAAGGAATACATAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTCAACTATACCCCCAAATAAATATAAAAAGGAATACATAAAA  1075

seq1  TTGGCTGAGAAAGAGAAGATATGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  TTGGCTGAGAAAGAGAAGATATGAATTC  1103