BAC Information

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BAC

Clone NameB6Ng01-062H13
ChromosomeX (Build37)
Map Location 156,951,131 - 157,058,375
singlet/doubletdoublet
Overlap genePhka2
Upstream geneA830080D01Rik, LOC100041359, Sh3kbp1, LOC667524, Pdha1, LOC100041403, LOC100041416, LOC100041427, Gpr64
Downstream genePpef1, Rs1, Gja6, Scml2, LOC414364, Prkaca-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062H13.bB6Ng01-062H13.g
ACCDH882860DH882861
length1,0761,114
definitionDH882860|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H13, 5' end.DH882861|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,057,278 - 157,058,375)(156,951,131 - 156,951,980)
sequence
gaattctctgcaaatgacttaggggtacttattgaatggtttattttttt
aactcatctgtaatgacacatctatcacataggaagctcccccatacaca
tggctctcattttagcctctttggtaccatccactgatcgctggggctgt
tttctcacaaatgcctcatgtgtcggacactatagatttataattttctt
gctttctggcagcaggagccctgctcttacctggattgtaagagtttctt
tggtcttttcaccctctgtccacatattagaatcagcttgtcaaatctgt
gaaatcagctattggattttaataggaaatgcatcatttctaaattagcc
tttccttttgtgactcttcctgctcataaacatgacatattttccaatta
tattagaatttgttcacctactttaatgaagaagtttgtgtcatttctat
aacccttaaaaaagattaatgccaaggtgaaatcctgcgcagatttgaag
gaaaaaaggggggggggagaaatgatgaaattataatctcaaaaaataaa
taagatataaatgattcatgccacgtatactatgtgagttttctatttct
attctatttctttttcttttttcatttttcttctcttcttgcttgcttcc
cacacagagttctattttagagtctggcagattcttttctagtcttctgt
tactttatgtatttcttgtatgacctgtatggatctgtggaggggaagcc
tatttatgtgtttgtactatgtgcagacacttgatcagtctggattgttc
gcttgtggaatttgtaaatttccattgttaattcatccatcattagtagc
acttgttgttccatatgtttgtatgtctggaatattccaatgatatttgg
gatgtggggagcttttcttccatgtctttgtttgacttgttcccatgggt
atcagagcttaaggactgtcttatgtacttttagtcctgatctctgaata
tgtggtagagtgaagcagatgaatgtagcctgtgttaaatctcaagagtt
tattctttccacccaagccctggccc
gaattcaggactgggagttgtagatgtcttccctgatcaagcttgtctca
aaagtctccagccaggtgatgtgtttggacaatggcagctattattgctc
ctgcagatctaagggaggtggcaagtcctattcctgctagcaaggggatg
aatatctcttgtttctgtctgatttgtagcagtagtgctaccttctcttc
ctcaaagagacaaacctgtggaataatcacaacagggatacaaaatcctg
gcagggggataagtttattgcagggggttatctttcccttacaccaaagg
aagaaaaggggtgatgtacaagtcaagctggtgacagtctcattggcagc
actttggtggtctgtaggcctagaagatcgaggagtgttgtagatatttg
atcaaaagggaaaagtcatgaaggtctggacaagcgttctgtctcttggt
tggctttatcacagaagtatttgtgggtattgtagcaagcagggggtggg
tgctagaggcaaaaaggaacagaggcatttgggtgtgtggtgaacaggag
aaagtcaacaacatattgaatgcattgactccaggatgctattgattttg
atccttcccttttgtttcctgtagaacaatgttataagttagtacaggct
tagctgtgagtacaagctatcggtagatacaaaggtcagcagaggggttg
gtatcaaagggagcataaagtttacccatcaccccattttccaccattca
ttccaaggttcttcaatgtttatctaaatgtggttagcattaagatcttt
agagtggtgtaatctgtggtgtgggatgtcccatgcttccttgtttctaa
cttacaggtccaatacagacaattctcaatgtttaacatccttaaaatat
gatggggtctgattgtcagaaagaaaaggaagcagatttggatgctgatt
atggggtggatccctgggatatggcagtctctacatggtcatcctttctc
ttcagctttcaaactatgcctctgtacttctttccatggggtgtttggtc
ccattctaaaggaggggctatgtgttcaccatttaattctttatcttctt
tgagtttcatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_157057278_157058375
seq2: B6Ng01-062H13.b_44_1119 (reverse)

seq1  GGGCCACGGGGCTTTGGGTGGGAAAAGAATAAAAGCTCTCTGAGAATTTA  50
      ||||||  |||| ||||||||  ||||||||||  |||| |||| |||||
seq2  GGGCCA--GGGC-TTGGGTGG--AAAGAATAAA--CTCT-TGAG-ATTTA  41

seq1  AAACCACAGGGCTACAATTCATTCTGCTTTCAACTCTACCCACATAATTC  100
      |   |||| |||||| ||||| |||||||   |||||| |||||| ||||
seq2  A---CACA-GGCTAC-ATTCA-TCTGCTT--CACTCTA-CCACAT-ATTC  81

seq1  AGAGACTCCAGACTAAAAAGTTACATAAGACCAGTTCCTTAAGCTCTGAT  150
      ||||| ||  ||||||||   ||||||||| ||| |||||||||||||||
seq2  AGAGA-TCAGGACTAAAA--GTACATAAGA-CAG-TCCTTAAGCTCTGAT  126

seq1  ACCCATGGGAACAAGTCAAACAAAGACATGGAAGAAAAGCT-CCCACATC  199
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCCATGGGAACAAGTCAAACAAAGACATGGAAGAAAAGCTCCCCACATC  176

seq1  CCAAATATCA-TGGAATATTCCAGACATACAAACATATGGAACAACAAGT  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATCATTGGAATATTCCAGACATACAAACATATGGAACAACAAGT  226

seq1  GCTACTAATGATGGATGAATTAACAATGGAAATTTACAAATTCCACAAGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTAATGATGGATGAATTAACAATGGAAATTTACAAATTCCACAAGC  276

seq1  GAACAATCCAGACTGATCAAGTGTCTGCACATAGTACAAACACATAAATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATCCAGACTGATCAAGTGTCTGCACATAGTACAAACACATAAATA  326

seq1  GGCTTCCCCTCCACAGATCCATACAGGTCATACAAGAAATACATAAAGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCCTCCACAGATCCATACAGGTCATACAAGAAATACATAAAGTA  376

seq1  ACAGAAGACTAGAAAAGAATCTGCCAGACTCTAAAATAGAACTCTGTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGACTAGAAAAGAATCTGCCAGACTCTAAAATAGAACTCTGTGTG  426

seq1  GGAAGCAAGCAAGAAGAGAAGAAAAATGAAAAAAGAAAAAGAAATAGAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCAAGCAAGAAGAGAAGAAAAATGAAAAAAGAAAAAGAAATAGAAT  476

seq1  AGAAATAGAAAACTCACATAGTATACGTGGCATGAATCATTTATATCTTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAGAAAACTCACATAGTATACGTGGCATGAATCATTTATATCTTA  526

seq1  TTTATTTTTTGAGATTATAATTTCATCATTTCTCCCCCCCCCCTTTTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTGAGATTATAATTTCATCATTTCTCCCCCCCCCCTTTTTTC  576

seq1  CTTCAAATCTGCGCAGGATTTCACCTTGGCATTAATCTTTTTTAAGGGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATCTGCGCAGGATTTCACCTTGGCATTAATCTTTTTTAAGGGTT  626

seq1  ATAGAAATGACACAAACTTCTTCATTAAAGTAGGTGAACAAATTCTAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATGACACAAACTTCTTCATTAAAGTAGGTGAACAAATTCTAATA  676

seq1  TAATTGGAAAATATGTCATGTTTATGAGCAGGAAGAGTCACAAAAGGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGAAAATATGTCATGTTTATGAGCAGGAAGAGTCACAAAAGGAAA  726

seq1  GGCTAATTTAGAAATGATGCATTTCCTATTAAAATCCAATAGCTGATTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATTTAGAAATGATGCATTTCCTATTAAAATCCAATAGCTGATTTC  776

seq1  ACAGATTTGACAAGCTGATTCTAATATGTGGACAGAGGGTGAAAAGACCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTGACAAGCTGATTCTAATATGTGGACAGAGGGTGAAAAGACCA  826

seq1  AAGAAACTCTTACAATCCAGGTAAGAGCAGGGCTCCTGCTGCCAGAAAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTCTTACAATCCAGGTAAGAGCAGGGCTCCTGCTGCCAGAAAGC  876

seq1  AAGAAAATTATAAATCTATAGTGTCCGACACATGAGGCATTTGTGAGAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATTATAAATCTATAGTGTCCGACACATGAGGCATTTGTGAGAAA  926

seq1  ACAGCCCCAGCGATCAGTGGATGGTACCAAAGAGGCTAAAATGAGAGCCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCCAGCGATCAGTGGATGGTACCAAAGAGGCTAAAATGAGAGCCA  976

seq1  TGTGTATGGGGGAGCTTCCTATGTGATAGATGTGTCATTACAGATGAGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGGGGGAGCTTCCTATGTGATAGATGTGTCATTACAGATGAGTT  1026

seq1  AAAAAAATAAACCATTCAATAAGTACCCCTAAGTCATTTGCAGAGAATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAAACCATTCAATAAGTACCCCTAAGTCATTTGCAGAGAATTC  1076

seq1: chrX_156951131_156951980
seq2: B6Ng01-062H13.g_334_1183

seq1  TTATTGCAGGGGGTTATCTTTCCCTTACACCAAAGGAAGAAAAGGGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCAGGGGGTTATCTTTCCCTTACACCAAAGGAAGAAAAGGGGTGA  50

seq1  TGTACAAGTCAAGCTGGTGACAGTCTCATTGGCAGCACTTTGGTGGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAGTCAAGCTGGTGACAGTCTCATTGGCAGCACTTTGGTGGTCTG  100

seq1  TAGGCCTAGAAGATCGAGGAGTGTTGTAGATATTTGATCAAAAGGGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTAGAAGATCGAGGAGTGTTGTAGATATTTGATCAAAAGGGAAAA  150

seq1  GTCATGAAGGTCTGGACAAGCGTTCTGTCTCTTGGTTGGCTTTATCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAAGGTCTGGACAAGCGTTCTGTCTCTTGGTTGGCTTTATCACAG  200

seq1  AAGTATTTGTGGGTATTGTAGCAAGCAGGGGGTGGGTGCTAGAGGCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTGTGGGTATTGTAGCAAGCAGGGGGTGGGTGCTAGAGGCAAAA  250

seq1  AGGAACAGAGGCATTTGGGTGTGTGGTGAACAGGAGAAAGTCAACAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAGAGGCATTTGGGTGTGTGGTGAACAGGAGAAAGTCAACAACAT  300

seq1  ATTGAATGCATTGACTCCAGGATGCTATTGATTTTGATCCTTCCCTTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGCATTGACTCCAGGATGCTATTGATTTTGATCCTTCCCTTTTG  350

seq1  TTTCCTGTAGAACAATGTTATAAGTTAGTACAGGCTTAGCTGTGAGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTAGAACAATGTTATAAGTTAGTACAGGCTTAGCTGTGAGTACA  400

seq1  AGCTATCGGTAGATACAAAGGTCAGCAGAGGGGTTGGTATCAAAGGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCGGTAGATACAAAGGTCAGCAGAGGGGTTGGTATCAAAGGGAGC  450

seq1  ATAAAGTTTACCCATCACCCCATTTTCCACCATTCATTCCAAGGTTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTTACCCATCACCCCATTTTCCACCATTCATTCCAAGGTTCTTC  500

seq1  AATGTTTATCTAAATGTGGTTAGCATTAAGATCTTTAGAGTGGTGTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTATCTAAATGTGGTTAGCATTAAGATCTTTAGAGTGGTGTAATC  550

seq1  TGTGGTGTGGGATGTCCCATGCTTCCTTGTTTCTAACTTACAGGTCCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGTGGGATGTCCCATGCTTCCTTGTTTCTAACTTACAGGTCCAAT  600

seq1  ACAGACAATTCTCATATGTTTTAACATCCTTAAAATATGAT-GGGTCTGA  649
      |||||||||||||| ||| |||||||||||||||||||||| ||||||||
seq2  ACAGACAATTCTCA-ATG-TTTAACATCCTTAAAATATGATGGGGTCTGA  648

seq1  TTGTCAGAAAGAAAAGGAAGCAGAGTTTGGATGCTGATTATGGGGTGGAT  699
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGTCAGAAAGAAAAGGAAGCAGA-TTTGGATGCTGATTATGGGGTGGAT  697

seq1  CCCT-GGATATGGCAGTCTCTACATGGTCCATCCTTTCATCTCAGC-TCC  747
      |||| ||||||||||||||||||||||| |||||||||   ||||| | |
seq2  CCCTGGGATATGGCAGTCTCTACATGGT-CATCCTTTCTCTTCAGCTTTC  746

seq1  AAACTTTGTCTCTGTAACTCCTTCCATGGGTGTTTTGTTCCCAATTCT-A  796
      ||||| || |||||||  || |||||||||   |||| |||| ||||| |
seq2  AAACTATGCCTCTGTACTTCTTTCCATGGGGTGTTTGGTCCC-ATTCTAA  795

seq1  AGGAGGGGCATAGTGTCCA-CACTTCAGTCTTCATTCTTC-TTGAGTTTC  844
      |||||||||   |||| || || || | |||| | ||||| |||||||||
seq2  AGGAGGGGCTATGTGTTCACCATTTAATTCTTTA-TCTTCTTTGAGTTTC  844

seq1  ATGTGT  850
      ||||||
seq2  ATGTGT  850