BAC Information

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BAC

Clone NameB6Ng01-062H22
ChromosomeX (Build37)
Map Location 63,191,327 - 63,192,571
singlet/doubletsinglet
Overlap geneLOC671840
Upstream geneLOC100040011, Ctag2
Downstream geneSlitrk2, LOC666824
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062H22.bB6Ng01-062H22.g
ACCDH882872DH882873
length1,1951,235
definitionDH882872|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H22, 5' end.DH882873|Mus musculus domesticus DNA, BAC clone: B6Ng01-062H22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattgtttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gttgtctttcttccactggatggttttagctccattgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatagtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagttttatcatac
agatctttcacctccttagttagagtcacgccaagatattttatatattt
gtgactattgagatggtgtgtttccctaatttcttctcagctgttattct
ttgtatgagaagccatgactgttgagtattttatatcagctacctcaccg
agctgttatcagttagattccttgtgaattagtcactatattacatcatc
actgcaaggaatttggactcccttccaattgactgatcttgtgcaatgct
cgctactcagcagtaagtgatggacgttgcgattaggagagccta
gaattccagtcctgacttccttcggtgatcaacagcaatgtggaagagta
agctgaataagccctttcctccccaagtgtttctggtcatgatgtttgtg
caggaatagaaaccccaactaagacagcagaataactcgtatgtccagcc
atatgcatactacgagcttagctgtctcctactagatagagcagagactg
taggaagaggcagaactctattccttcaggcaaaggaggatttttctgac
tatgactttgaaaacatattgcatgttagcatccatgctgctctggcctc
cctcagggaacttgtccttcagtgataaactccaagaggccccttcgttc
ccttcacccagagtcagcactatgaaagctgaggagaaagctctcttgaa
gatcagcttttcttttggagaccacctgtgccagggatgggtttcctggt
gtctctgacatgctaaagattcatctttaaacatgtagctatagagtaat
aaagatgtctgtaatgataatagtaacagacctgggagagggttaagtga
ccttgttcaaacattttagttttgtgatttattatttttaaatagaatca
aacaaaatattcaaaaaagtaagagaatttttattatataggttcatggt
tccatcttggaatcaaggcatagtaatagcagttaacacagcaggggcaa
gaagctgaaatctcaaattttaggcacaagcaagaaacagtgtgaaatgg
aagtggcttgaggtttaaaacactccaagcctccccacccccaggatgaa
ctttctgcaagtttctatggggctccaccacataaaattccgcaaatagc
agcaccaactgtgtgttcaaatatcttagcctgtagaagacatttctcac
tcaaaccagaacaaaggcatatctcttggatttgctcttcaatcttgcct
ggataaactccaggtcaaagaactgcttataaaataaagaaggtaaatga
tatacaacaatgaatactctaacattaaaacccacccacacacccacata
cctacatggacctacatacacatagtcacacattggaacacaaaacacaa
caaacacatctccagttactaaaataaacttaatttatttaatgatgact
acttctgtaggctttaaggtcaggtcgagttgatcctagctatgtcagtg
ttaataactcttaatctctaacggcctatcttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_63191327_63192571
seq2: B6Ng01-062H22.g_68_1302

seq1  GAATTCCAGTCCTGACTTCCTTCGGTGATCAACAGCAATGTGGAAGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCTGACTTCCTTCGGTGATCAACAGCAATGTGGAAGAGTA  50

seq1  AGCTGAATAAGCCCTTTCCTCCCCAAGTGTTTCTGGTCATGATGTTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATAAGCCCTTTCCTCCCCAAGTGTTTCTGGTCATGATGTTTGTG  100

seq1  CAGGAATAGAAACCCCAACTAAGACAGCAGAATAACTCGTATGTCCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATAGAAACCCCAACTAAGACAGCAGAATAACTCGTATGTCCAGCC  150

seq1  ATATGCATACTACGAGCTTAGCTGTCTCCTACTAGATAGAGCAGAGACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATACTACGAGCTTAGCTGTCTCCTACTAGATAGAGCAGAGACTG  200

seq1  TAGGAAGAGGCAGAACTCTATTCCTTCAGGCAAAGGAGGATTTTTCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGAGGCAGAACTCTATTCCTTCAGGCAAAGGAGGATTTTTCTGAC  250

seq1  TATGACTTTGAAAACATATTGCATGTTAGCATCCATGCTGCTCTGGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTTGAAAACATATTGCATGTTAGCATCCATGCTGCTCTGGCCTC  300

seq1  CCTCAGGGAACTTGTCCTTCAGTGATAAACTCCAAGAGGCCCCTTCGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGAACTTGTCCTTCAGTGATAAACTCCAAGAGGCCCCTTCGTTC  350

seq1  CCTTCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAGCTCTCTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACCCAGAGTCAGCACTATGAAAGCTGAGGAGAAAGCTCTCTTGAA  400

seq1  GATCAGCTTTTCTTTTGGAGACCACCTGTGCCAGGGATGGGTTTCCTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCTTTTCTTTTGGAGACCACCTGTGCCAGGGATGGGTTTCCTGGT  450

seq1  GTCTCTGACATGCTAAAGATTCATCTTTAAACATGTAGCTATAGAGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGACATGCTAAAGATTCATCTTTAAACATGTAGCTATAGAGTAAT  500

seq1  AAAGATGTCTGTAATGATAATAGTAACAGACCTGGGAGAGGGTTAAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGTCTGTAATGATAATAGTAACAGACCTGGGAGAGGGTTAAGTGA  550

seq1  CCTTGTTCAAACATTTTAGTTTTGTGATTTATTATTTTTAAATAGAATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCAAACATTTTAGTTTTGTGATTTATTATTTTTAAATAGAATCA  600

seq1  AACAAAATATTCAAAAAAGTAAGAGAATTTTTATTATATAGGTTCATGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATATTCAAAAAAGTAAGAGAATTTTTATTATATAGGTTCATGGT  650

seq1  TCCATCTTGGAATCAAGGCATAGTAATAGCAGTTAACACAGCAGGGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTGGAATCAAGGCATAGTAATAGCAGTTAACACAGCAGGGGCAA  700

seq1  GAAGCTGAAATCTCAAATTTTAGGCACAAGCAAGAAACAGTGTGAAATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGAAATCTCAAATTTTAGGCACAAGCAAGAAACAGTGTGAAATGG  750

seq1  AAGTGGCTTGAGGTTTAAAACACTCCAAGCCTCCCCACCCCCAGGATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCTTGAGGTTTAAAACACTCCAAGCCTCCCCACCCCCAGGATGAA  800

seq1  CTTTCTGCAAG-TTCTATGGGGCTCCACCACATAAAATTCCGCAAATAGC  849
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCAAGTTTCTATGGGGCTCCACCACATAAAATTCCGCAAATAGC  850

seq1  AGCACCAACTGTGTGTTCAAATATCTTAGCCTGTAGAAGACATTTCTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAACTGTGTGTTCAAATATCTTAGCCTGTAGAAGACATTTCTCAC  900

seq1  TCAAACCAGAACAAAGGCATATCTCTTGGATTTGCTCTCCAATCTTGCCT  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAAACCAGAACAAAGGCATATCTCTTGGATTTGCTCTTCAATCTTGCCT  950

seq1  GGATAAACTCCAGGTCAAAGAACTGCTTATAAAATAAAGAAGGTAAATGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAACTCCAGGTCAAAGAACTGCTTATAAAATAAAGAAGGTAAATGA  1000

seq1  TATACAACAATG-ATACTCTAACATTAAAACACACACACACACACACATA  1048
      |||||||||||| |||||||||||||||||| ||| ||||||| ||||||
seq2  TATACAACAATGAATACTCTAACATTAAAACCCACCCACACACCCACATA  1050

seq1  CCTACATGGACCTACATACACATAGTCACACATGCACACACACACACACA  1098
      |||||||||||||||||||||||||||||||||    ||||| | |||||
seq2  CCTACATGGACCTACATACACATAGTCACACATTGGAACACA-AAACACA  1099

seq1  CACACACACACTCTTCCAGTTTACT-AAATAAACTTAATTTATATTAATG  1147
       ||| ||||| || ||||| ||||| ||||||||||||||||| ||||||
seq2  -ACAAACACA-TC-TCCAG-TTACTAAAATAAACTTAATTTAT-TTAATG  1144

seq1  ATGACATACATACATAAAGCTTATAAGTCAGGTTCTAGTTTAGTCAATCT  1197
      ||||| ||| | |   | ||||  | |||||| || |||| |  | | ||
seq2  ATGAC-TAC-TTCTGTAGGCTTTAAGGTCAGG-TCGAGTTGATCCTAGCT  1191

seq1  ATGTCAATGTTAATTAACTCATTTAATCTCTAAACAGCCTATCTTACA  1245
      |||||| |||||| ||||||  ||||||||| ||| ||||||||||||
seq2  ATGTCAGTGTTAA-TAACTC--TTAATCTCT-AACGGCCTATCTTACA  1235