BAC Information

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BAC

Clone NameB6Ng01-063A04
ChromosomeX (Build37)
Map Location 95,367,822 - 95,510,311
singlet/doubletdoublet
Overlap geneAr
Upstream geneEda2r, LOC668244
Downstream geneLOC100042324, Ophn1, Yipf6, LOC100042932, Stard8, LOC436219, Efnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063A04.bB6Ng01-063A04.g
ACCDH883235DH883236
length1,1901,102
definitionDH883235|Mus musculus domesticus DNA, BAC clone: B6Ng01-063A04, 5' end.DH883236|Mus musculus domesticus DNA, BAC clone: B6Ng01-063A04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,509,106 - 95,510,311)(95,367,822 - 95,368,935)
sequence
gaattcctggggggttatttggagccatccaaactcttgagacaggtgcc
tcatcctcacacactggctgtacatccgagacttgtgcatgcggtaccta
agcaagagacacacagatgaagaggaaaaaggaggggaggcttcccacca
gctcacacgaaatgtttcttgttgtccctcccactctagattctctaaga
aaaaaaaaatctggctatttgtcctggttagactatagtgactatagttc
cccctgtgcccaaaacttgtgataccctgatacggactcatcttccctag
tcaggatatggtttagcacatggaatttccaggtctgtatttcctttctg
tttcctgagtcagggacaggaaagcataagcaaatgaacacaatgggcca
ggcacatggtctccctgactacagagctaagatcacagctaaggccagag
ccagaagcagccacctaggcagcccatttcaggatttctcaaggcgacat
ctcaggcaagctcctcttccatgtaagaaaaccaggatttgcaagtagcc
acaggtgtttatcttgtcaacacccctgcctgccatttcctgtaatagaa
atttaatcatttctttaaaaacacctaggaatagatacacactgcacatt
ggcctttcacaatgagttccagtgcttctaaatgtgctaggggtgttttg
caatgtctatctttgatgtcctctgcagaggggagcccactccctcatag
actggctgttccttaccgcagtttgggagttgttaacatctgtgatctgc
tttcttatagtgagttgtgaacagattatcacattatcacctataaatta
tatagagaagtggccaaagctcagacaacttcagggtggaggcaacctct
ctgttccatgtctggctatggcaagcctctaaaaagacaactaataggcc
tttaagttcagaaactctctctctctctctctctctctctctcaaacaca
cacacacacacacacgatacacaatacagacatacaatatagagagagag
aggcgaacagagacagaggcgaaagacaggaagatggaaacagagtccaa
agaaagaccaaaagatggtgacagatcgaggccgactcgagacgtgggga
aaagaaggagagtcatttctgccagtgagaaagaaaggaa
gaattcattagttggatctcccttaaaaattataggtgatatatttagaa
tgctgaaaactataataaatttacaaatacattatttacatacaattgaa
agagctgactctttgtattattttattagaattagacttacttacattca
tttgaattattgattactaaaacaatacaaaaacaaagccaaaatgtgag
gctgaggaatctatcttaccttgaaattaaagcatgttatggtttactac
tactactactactactactactactattactattattattattattatta
ttattattattattatttgttggtttaaattcagagaaaactgtaatatt
aggtttaaaccagaagatggaggtttgaatgtttgtaccatattctcaac
agtctttcaaatctcagcaatttaaaatttcaattttatacataacagta
ataataaaatctttctcaggtgctaccagatgattgtttgtgacaacatt
ttcacttgtttaatgaagaaaaagaaaaattaacatcagagtgaattttt
caaaatacaaaatattcagttaaggtaatagtctaacactttcttttgca
ataaatctctgccatttcatttctatagaaggcatttcaggctccatact
gccttttctggaaagcaaaggtgagtattggttgagaaggaatagaaact
tttttgagtgaaagccagtactgatccatacatatggcataaagtatctt
gtcttttccatcatcaaatatttaagttgtaactttatgaccactatagt
ttctctgtgtagtgacctccatattttctcttatcttgtttgggaaaatc
aaatcatatcaatatatttatttctactaaagtctcatgaaaacattaag
attagtatctgagtaaagatcctagtgttgaccctcatagactttaaaat
ctataaaagtaaatacacttcttggagtttactgttttgtttttttaagt
atctttttttttctgtttactagtatgtggaataaggatttgccgctgta
agaaatcttagaactgaaagacagcctggaagaagaagttatctgaccgg
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_95509106_95510311
seq2: B6Ng01-063A04.b_49_1238 (reverse)

seq1  TTCCTTTC-TTCACA-TGCTAGAAATGAACTCTCCTCTCTCTCCCCACTG  48
      |||||||| ||| || ||  ||||||| ||||||||   | ||||||| |
seq2  TTCCTTTCTTTCTCACTGGCAGAAATG-ACTCTCCTTCTTTTCCCCAC-G  48

seq1  TCTCTCTATGTCTGTCTCTCTGACTCTGTCACCATCTCTCTGTGTCTGTC  98
      ||||     ||| | |||   || ||||||||||||| | || |||| ||
seq2  TCTC---GAGTCGGCCTC---GA-TCTGTCACCATCT-TTTG-GTCTTTC  89

seq1  TCTCTGACTCTGTCTCCATCTCTCTGTCTCTCTGCCTCTGTCTCTGTCTG  148
      | |  |||||||| |||||||  |||||| || ||||||||||||||  |
seq2  T-TTGGACTCTGTTTCCATCTTCCTGTCTTTC-GCCTCTGTCTCTGTTCG  137

seq1  CCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  198
      ||||||||||||| | | ||| ||| ||| | ||||| |  |||||||||
seq2  CCTCTCTCTCTCTATAT-TGTATGTCTGTAT-TGTGTAT-CGTGTGTGTG  184

seq1  TGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGTTCTGA  248
      ||||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  TGTGTGTGTGTTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGT-TTCTGA  233

seq1  ACTTAAAGGCCTATTAGTTGTCTTTTTTAGAGGCTTGCCATAGCCAGACA  298
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACTTAAAGGCCTATTAGTTGTC-TTTTTAGAGGCTTGCCATAGCCAGACA  282

seq1  TGGAACAGAGAGGTTGCCTCCACCCTGAAGTTGTCTGAGCCTTGGCCACT  348
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGGAACAGAGAGGTTGCCTCCACCCTGAAGTTGTCTGAGCTTTGGCCACT  332

seq1  TCTCTATATAATTTATAGGTGATAATGTGATAATCTGTTCACAACTCACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATATAATTTATAGGTGATAATGTGATAATCTGTTCACAACTCACT  382

seq1  ATAAGAAAGCAGATCACAGATGTTAACAACTCCCAAACTGCGGTAAGGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAAGCAGATCACAGATGTTAACAACTCCCAAACTGCGGTAAGGAA  432

seq1  CAGCCAGTCTATGAGGGAGTGGGCTCCCCTCTGCAGAGGACATCAAAGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTCTATGAGGGAGTGGGCTCCCCTCTGCAGAGGACATCAAAGAT  482

seq1  AGACATTGCAAAACACCCCTAGCACATTTAGAAGCACTGGAACTCATTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTGCAAAACACCCCTAGCACATTTAGAAGCACTGGAACTCATTGT  532

seq1  GAAAGGCCAATGTGCAGTGTGTATCTATTCCTAGGTGTTTTTAAAGAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCAATGTGCAGTGTGTATCTATTCCTAGGTGTTTTTAAAGAAAT  582

seq1  GATTAAATTTCTATTACAGGAAATGGCAGGCAGGGGTGTTGACAAGATAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAATTTCTATTACAGGAAATGGCAGGCAGGGGTGTTGACAAGATAA  632

seq1  ACACCTGTGGCTACTTGCAAATCCTGGTTTTCTTACATGGAAGAGGAGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGTGGCTACTTGCAAATCCTGGTTTTCTTACATGGAAGAGGAGCT  682

seq1  TGCCTGAGATGTCGCCTTGAGAAATCCTGAAATGGGCTGCCTAGGTGGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGATGTCGCCTTGAGAAATCCTGAAATGGGCTGCCTAGGTGGCT  732

seq1  GCTTCTGGCTCTGGCCTTAGCTGTGATCTTAGCTCTGTAGTCAGGGAGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGGCTCTGGCCTTAGCTGTGATCTTAGCTCTGTAGTCAGGGAGAC  782

seq1  CATGTGCCTGGCCCATTGTGTTCATTTGCTTATGCTTTCCTGTCCCTGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCTGGCCCATTGTGTTCATTTGCTTATGCTTTCCTGTCCCTGAC  832

seq1  TCAGGAAACAGAAAGGAAATACAGACCTGGAAATTCCATGTGCTAAACCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAACAGAAAGGAAATACAGACCTGGAAATTCCATGTGCTAAACCA  882

seq1  TATCCTGACTAGGGAAGATGAGTCCGTATCAGGGTATCACAAGTTTTGGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGACTAGGGAAGATGAGTCCGTATCAGGGTATCACAAGTTTTGGG  932

seq1  CACAGGGGGAACTATAGTCACTATAGTCTAACCAGGACAAATAGCCAGAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGGGAACTATAGTCACTATAGTCTAACCAGGACAAATAGCCAGAT  982

seq1  TTTTTTTTTCTTAGAGAATCTAGAGTGGGAGGGACAACAAGAAACATTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCTTAGAGAATCTAGAGTGGGAGGGACAACAAGAAACATTTC  1032

seq1  GTGTGAGCTGGTGGGAAGCCTCCCCTCCTTTTTCCTCTTCATCTGTGTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGCTGGTGGGAAGCCTCCCCTCCTTTTTCCTCTTCATCTGTGTGT  1082

seq1  CTCTTGCTTAGGTACCGCATGCACAAGTCTCGGATGTACAGCCAGTGTGT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCTTAGGTACCGCATGCACAAGTCTCGGATGTACAGCCAGTGTGT  1132

seq1  GAGGATGAGGCACCTGTCTCAAGAGTTTGGATGGCTCCAAATAACCCCCC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGAGGCACCTGTCTCAAGAGTTTGGATGGCTCCAAATAACCCCCC  1182

seq1  AGGAATTC  1206
      ||||||||
seq2  AGGAATTC  1190

seq1: chrX_95367822_95368935
seq2: B6Ng01-063A04.g_65_1166

seq1  GAATTCATTAGTTGGATCTCCCTTAAAAATTATAGGTGATATATTTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGTTGGATCTCCCTTAAAAATTATAGGTGATATATTTAGAA  50

seq1  TGCTGAAAACTATAATAAATTTACAAATACATTATTTACATACAATTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAAACTATAATAAATTTACAAATACATTATTTACATACAATTGAA  100

seq1  AGAGCTGACTCTTTGTATTATTTTATTAGAATTAGACTTACTTACATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGACTCTTTGTATTATTTTATTAGAATTAGACTTACTTACATTCA  150

seq1  TTTGAATTATTGATTACTAAAACAATACAAAAACAAAGCCAAAATGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTATTGATTACTAAAACAATACAAAAACAAAGCCAAAATGTGAG  200

seq1  GCTGAGGAATCTATCTTACCTTGAAATTAAAGCATGTTATGGTTTACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGAATCTATCTTACCTTGAAATTAAAGCATGTTATGGTTTACTAC  250

seq1  TACTACTACTACTACTACTACTACTATTACTATTATTATTATTATTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTACTACTACTACTACTACTATTACTATTATTATTATTATTATTA  300

seq1  TTATTATTATTATTATTTGTTGGTTTAAATTCAGAGAAAACTGTAATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTATTTGTTGGTTTAAATTCAGAGAAAACTGTAATATT  350

seq1  AGGTTTAAACCAGAAGATGGAGGTTTGAATGTTTGTACCATATTCTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAAACCAGAAGATGGAGGTTTGAATGTTTGTACCATATTCTCAAC  400

seq1  AGTCTTTCAAATCTCAGCAATTTAAAATTTCAATTTTATACATAACAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTCAAATCTCAGCAATTTAAAATTTCAATTTTATACATAACAGTA  450

seq1  ATAATAAAATCTTTCTCAGGTGCTACCAGATGATTGTTTGTGACAACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAATCTTTCTCAGGTGCTACCAGATGATTGTTTGTGACAACATT  500

seq1  TTCACTTGTTTAATGAAGAAAAAGAAAAATTAACATCAGAGTGAATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGTTTAATGAAGAAAAAGAAAAATTAACATCAGAGTGAATTTTT  550

seq1  CAAAATACAAAATATTCAGTTAAGGTAATAGTCTAACACTTTCTTTTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACAAAATATTCAGTTAAGGTAATAGTCTAACACTTTCTTTTGCA  600

seq1  ATAAATCTCTGCCATTTCATTTCTATAGAAGGCATTTCAGGCTCCATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATCTCTGCCATTTCATTTCTATAGAAGGCATTTCAGGCTCCATACT  650

seq1  GCCTTTTCTGGAAAGCAAAGGTGAGTATTGGTTGAGAAGGAATAGAAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCTGGAAAGCAAAGGTGAGTATTGGTTGAGAAGGAATAGAAACT  700

seq1  TTTTTGAGTGAAAGCCAGTACTGATCCATACATATGGCATAAAGTATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGTGAAAGCCAGTACTGATCCATACATATGGCATAAAGTATCTT  750

seq1  GTCTTTTCCATCATCAAATATTTAAGTTGTAACTTTATGACCACTATAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCCATCATCAAATATTTAAGTTGTAACTTTATGACCACTATAGT  800

seq1  TTCTCTGTGTAGTGACCTCCATATTTTCTCTTATCTTGTTTGGGAAAAAT  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCTCTGTGTAGTGACCTCCATATTTTCTCTTATCTTGTTTGGG-AAAAT  849

seq1  CAAATCATATCAATATATTTATTTCTACTAAAGTCTCATGAAAACATTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCATATCAATATATTTATTTCTACTAAAGTCTCATGAAAACATTAA  899

seq1  GATTAGTATCTGAGTAAAGATCCTAGGTGTTGACCCTCATAGACTTTAAA  950
      ||||||||||||||||||||||||| ||||||||||||||||||||| ||
seq2  GATTAGTATCTGAGTAAAGATCCTA-GTGTTGACCCTCATAGACTTT-AA  947

seq1  AATCTATAAAAGTAAATACAACTTCTTGGAGTTTACTGTTTTGTTTTTTT  1000
      ||||||||||||||||||| ||||||||||||||||||||||| ||||||
seq2  AATCTATAAAAGTAAATAC-ACTTCTTGGAGTTTACTGTTTTG-TTTTTT  995

seq1  TAAGTATCTTTTTTTTTTCTGTTTTACTAGTATGTGGAAATAAGGATTTG  1050
      |||||||| |||||||||||| ||||||||||||||| ||||||||||||
seq2  TAAGTATC-TTTTTTTTTCTG-TTTACTAGTATGTGG-AATAAGGATTTG  1042

seq1  CGCTTGTAAGGAGATCATTAG-ACTGAAAGACAAGCCTGGAGGAAGGAAA  1099
      |   ||||| || ||| |||| |||||||||| |||||||| ||||  ||
seq2  CCGCTGTAA-GAAATC-TTAGAACTGAAAGAC-AGCCTGGAAGAAG--AA  1087

seq1  GTTATCTGACCGGTT  1114
      |||||||||||||||
seq2  GTTATCTGACCGGTT  1102