BAC Information

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BAC

Clone NameB6Ng01-063B19
ChromosomeX (Build37)
Map Location 105,816,846 - 105,935,542
singlet/doubletdoublet
Overlap geneGm379
Upstream geneTbx22, 2610002M06Rik, Gm732, Gm378, LOC668516
Downstream geneBrwd3, 5730416F02Rik, Nsbp1, Sh3bgrl, EG622976, LOC100042831, LOC213474
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063B19.bB6Ng01-063B19.g
ACCDH883305DH883306
length1,1421,075
definitionDH883305|Mus musculus domesticus DNA, BAC clone: B6Ng01-063B19, 5' end.DH883306|Mus musculus domesticus DNA, BAC clone: B6Ng01-063B19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,934,364 - 105,935,542)(105,816,846 - 105,817,938)
sequence
gaattctgcacatgaagaccactgttaggcccatgaaaacacacacatgt
agagctttaatcctgtgctatatctgaatagtcagtaagctataatattt
catgaatgctagtgttcagattccaagcttcatgaccttagcatgtgtag
atgtttataaaattgaatcatgtgtttcttctctggcttgctgtacatat
ctcagctagcaataggaggctctccaaaacatgcacaaacccactagcct
aatgactaaatttgtttttgtaaaagtctttgtgtgcttgtatgtatgta
gcttttttctagtttgacataccttatcccagacattaaaaagagagact
attttcgatggaggacactgtctaccaattatttgcctctttagagctca
gcctgtgcatttcttagcgcttaatcatccatgtcattatgtcttctaga
tgacaattttggttttgtcacgtgtgtccctcttttcttttcatttaatt
ttggtctttcatttgtttgtattttctctttccctccccagaaatcaggc
ttattctagaaattgttcctaaggtgcttcctttgctccagaggcaaagg
aactgagtaaaatgctgaagtttccctctacacactttagttctcctata
cctaaattagctttcagatgttgtaaattcgagtgatttatcatttggtt
ttgttttaatcatgtagattgtcatcagacaatacagtgattaaaagaga
aagatgtgaatgccacttctaacttttgaataaaacttttggagcatttt
ttaaaatgtgcaagtttgtggtaatgatacacaccttactatatatggaa
tcattttatgcacagttgccaactggtacttctttaaagctgcattttca
tgccctcaaaaggaatcttaaaacatgctattttcactacattttggtgt
tcagccttttagcatgtacatacatttgaaagtccaaatatagttctggg
gagatagggctttgatatttaaagtctttatttaatgctaacacatcaca
acatctggtggcagcgagctttatgatgttactgaaaatctagatcaatt
tttagcttgtttaatcatgtgaattgcaagctgttttttttt
gaattcccatgttcctaacatgtagctagctaccctcagtgagggctata
aaatggcattatatgaaggaataagctaggatgtatttcattgcaaatta
acctttgagatctcaatggctcaaaatacaatggcaaaattagtgtgtat
ttcagattttatggccatccttttcagcaacagtcttctaccatattcaa
agacctaggctaacagaggctgtaccatactatgaaaacattctctaacc
agaacagaagaaattttgatagaatcagaaaatgattcttaaggactttg
gcttggagtttacattcactgattattattggttataactagcatcatag
tctcacatgatttcatgtgggtttgaaaggaaacaaaaagatagttcatg
atcactaaatatgtacatggcaaacacctcaactctacatacaagagagt
ttcagagatgagaaataataattgtatcttttccacaaagcagggaagtg
taaaacatgtgcatgatattttttaagtttccttaaatctagagaaacct
ttatattaattagaaacacttttcagaacctctgtgttcaaaataattag
aaccagacaagtacctgtactgagaagaaaggcagcaaatgctggttaag
gttgttgccccacaggttaaagctagcttaggaaatgatcaaaggtcacc
aatggtttatttggtgaagaaaatgacgttggatgctgtctacagaataa
tgaacaactcttatggataatgattcttaagagtcaaagtcctttgagta
aatctctagaatttatgactagggtgaagcatgccctattccaacaaagt
actggagcagaaaggaattttgaagaatttcttctagccaggaaaatgtc
agaatgcactctcagtttcatactaggtaagtcttgagtataaaaaatgt
atccaataattattatattttatattgtttttctgatacatgcatatgat
ggggtgcattcatttggtattcaacaatattctttcataatattgctttc
aggatctatcatagaattaataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_105934364_105935542
seq2: B6Ng01-063B19.b_45_1186 (reverse)

seq1  AAAAAAAAACAGCATGCAATATTTCACCATGAATTTTAAAAACAAGCCTT  50
      ||||||||||||| |||||   |||| ||||| |     ||||||||  |
seq2  AAAAAAAAACAGCTTGCAA---TTCA-CATGATT-----AAACAAGC--T  39

seq1  AAAAAATGATCTTAGAATATTTTCAGTAACATTCATAAAGCCTCGGCTGC  100
      ||||| ||||||    | ||||||||||||| |||||||| ||| |||||
seq2  AAAAATTGATCT----AGATTTTCAGTAACA-TCATAAAG-CTC-GCTGC  82

seq1  CACCAAGATGTTGGTGAATGTGGTTAGCATTTAAAATAAAAGACTTTAAA  150
      |||| ||||||| ||| |||| |||||||||  |||| ||||||||||||
seq2  CACC-AGATGTT-GTG-ATGT-GTTAGCATT--AAAT-AAAGACTTTAAA  125

seq1  TATCAAAAGCCCTATTCCTTCCCCCAGAACTATTAATTTTGGACTTTCAA  200
      |||| ||||||||||  ||  ||||||||||||    |||||||||||||
seq2  TATC-AAAGCCCTAT--CT--CCCCAGAACTAT---ATTTGGACTTTCAA  167

seq1  ATGTTATTGTACATGCTTAAAAGGCTGAACACCAAAATGTAGTGAAAATA  250
      ||||   ||||||||| |||||||||||||||||||||||||||||||||
seq2  ATGT--ATGTACATGC-TAAAAGGCTGAACACCAAAATGTAGTGAAAATA  214

seq1  GCATGTTTTAAGATTCCTTTTTGAGGGCATGAAAATGCAGCTTTAAAGAA  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCATGTTTTAAGATTCC-TTTTGAGGGCATGAAAATGCAGCTTTAAAGAA  263

seq1  GTACCAGTTGGCAACTGTGCATAAAATGATTCCATATATAGTAAGGTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGTTGGCAACTGTGCATAAAATGATTCCATATATAGTAAGGTGTG  313

seq1  TATCATTACCACAAACTTGCACATTTTAAAAAATGCTCCAAAAGTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTACCACAAACTTGCACATTTTAAAAAATGCTCCAAAAGTTTTAT  363

seq1  TCAAAAGTTAGAAGTGGCATTCACATCTTTCTCTTTTAATCACTGTATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGTTAGAAGTGGCATTCACATCTTTCTCTTTTAATCACTGTATTG  413

seq1  TCTGATGACAATCTACATGATTAAAACAAAACCAAATGATAAATCACTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGACAATCTACATGATTAAAACAAAACCAAATGATAAATCACTCG  463

seq1  AATTTACAACATCTGAAAGCTAATTTAGGTATAGGAGAACTAAAGTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACAACATCTGAAAGCTAATTTAGGTATAGGAGAACTAAAGTGTGT  513

seq1  AGAGGGAAACTTCAGCATTTTACTCAGTTCCTTTGCCTCTGGAGCAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAACTTCAGCATTTTACTCAGTTCCTTTGCCTCTGGAGCAAAGG  563

seq1  AAGCACCTTAGGAACAATTTCTAGAATAAGCCTGATTTCTGGGGAGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCTTAGGAACAATTTCTAGAATAAGCCTGATTTCTGGGGAGGGAA  613

seq1  AGAGAAAATACAAACAAATGAAAGACCAAAATTAAATGAAAAGAAAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAATACAAACAAATGAAAGACCAAAATTAAATGAAAAGAAAAGAG  663

seq1  GGACACACGTGACAAAACCAAAATTGTCATCTAGAAGACATAATGACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACGTGACAAAACCAAAATTGTCATCTAGAAGACATAATGACATG  713

seq1  GATGATTAAGCGCTAAGAAATGCACAGGCTGAGCTCTAAAGAGGCAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTAAGCGCTAAGAAATGCACAGGCTGAGCTCTAAAGAGGCAAATA  763

seq1  ATTGGTAGACAGTGTCCTCCATCGAAAATAGTCTCTCTTTTTAATGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAGACAGTGTCCTCCATCGAAAATAGTCTCTCTTTTTAATGTCTG  813

seq1  GGATAAGGTATGTCAAACTAGAAAAAAGCTACATACATACAAGCACACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGGTATGTCAAACTAGAAAAAAGCTACATACATACAAGCACACAA  863

seq1  AGACTTTTACAAAAACAAATTTAGTCATTAGGCTAGTGGGTTTGTGCATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTACAAAAACAAATTTAGTCATTAGGCTAGTGGGTTTGTGCATG  913

seq1  TTTTGGAGAGCCTCCTATTGCTAGCTGAGATATGTACAGCAAGCCAGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGAGCCTCCTATTGCTAGCTGAGATATGTACAGCAAGCCAGAGA  963

seq1  AGAAACACATGATTCAATTTTATAAACATCTACACATGCTAAGGTCATGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACACATGATTCAATTTTATAAACATCTACACATGCTAAGGTCATGA  1013

seq1  AGCTTGGAATCTGAACACTAGCATTCATGAAATATTATAGCTTACTGACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGAATCTGAACACTAGCATTCATGAAATATTATAGCTTACTGACT  1063

seq1  ATTCAGATATAGCACAGGATTAAAGCTCTACATGTGTGTGTTTTCATGGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATATAGCACAGGATTAAAGCTCTACATGTGTGTGTTTTCATGGG  1113

seq1  CCTAACAGTGGTCTTCATGTGCAGAATTC  1179
      |||||||||||||||||||||||||||||
seq2  CCTAACAGTGGTCTTCATGTGCAGAATTC  1142

seq1: chrX_105816846_105817938
seq2: B6Ng01-063B19.g_66_1140

seq1  GAATTCCCATGTTCCTAACATGTAGCTAGCTACCCTCAGTGAGGGCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGTTCCTAACATGTAGCTAGCTACCCTCAGTGAGGGCTATA  50

seq1  AAATGGCATTATATGAAGGAATAAGCTAGGATGTATTTCATTGCAAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCATTATATGAAGGAATAAGCTAGGATGTATTTCATTGCAAATTA  100

seq1  ACCTTTGAGATCTCAATGGCTCAAAATACAATGGCAAAATTAGTGTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTGAGATCTCAATGGCTCAAAATACAATGGCAAAATTAGTGTGTAT  150

seq1  TTCAGATTTTATGGCCATCCTTTTCAGCAACAGTCTTCTACCATATTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTTTATGGCCATCCTTTTCAGCAACAGTCTTCTACCATATTCAA  200

seq1  AGACCTAGGCTAACAGAGGCTGTACCATACTATGAAAACATTCTCTAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAGGCTAACAGAGGCTGTACCATACTATGAAAACATTCTCTAACC  250

seq1  AGAACAGAAGAAATTTTGATAGAATCAGAAAATGATTCTTAAGGACTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGAAGAAATTTTGATAGAATCAGAAAATGATTCTTAAGGACTTTG  300

seq1  GCTTGGAGTTTACATTCACTGATTATTATTGGTTATAACTAGCATCATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGTTTACATTCACTGATTATTATTGGTTATAACTAGCATCATAG  350

seq1  TCTCACATGATTTCATGTGGGTTTGAAAGGAAACAAAAAGATAGTTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATGATTTCATGTGGGTTTGAAAGGAAACAAAAAGATAGTTCATG  400

seq1  ATCACTAAATATGTACATGGCAAACACCTCAACTCTACATACAAGAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTAAATATGTACATGGCAAACACCTCAACTCTACATACAAGAGAGT  450

seq1  TTCAGAGATGAGAAATAATAATTGTATCTTTTCCACAAAGCAGGGAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGATGAGAAATAATAATTGTATCTTTTCCACAAAGCAGGGAAGTG  500

seq1  TAAAACATGTGCATGATATTTTTTAAGTTTCCTTAAATCTAGAGAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATGTGCATGATATTTTTTAAGTTTCCTTAAATCTAGAGAAACCT  550

seq1  TTATATTAATTAGAAACACTTTTCAGAACCTCTGTGTTCAAAATAATTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTAATTAGAAACACTTTTCAGAACCTCTGTGTTCAAAATAATTAG  600

seq1  AACCAGACAAGTACCTGTACTGAGAAGAAAGGCAGCAAATGCTGGTTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGACAAGTACCTGTACTGAGAAGAAAGGCAGCAAATGCTGGTTAAG  650

seq1  GTTGTTGCCCCACAGGTTAAAGCTAGCTTAGGAAATGATCAAAGGTCACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGCCCCACAGGTTAAAGCTAGCTTAGGAAATGATCAAAGGTCACC  700

seq1  AATGGTTTATTTGGTGAAGAAAATGACGTTGGATGCTGTCTACAGAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTTATTTGGTGAAGAAAATGACGTTGGATGCTGTCTACAGAATAA  750

seq1  TGAACAACTCTTATGGATAATGATTCTTAAGAGTCAAAGTCCTTTGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAACTCTTATGGATAATGATTCTTAAGAGTCAAAGTCCTTTGAGTA  800

seq1  AATCTCTAGAATTTATGACTAGGGTGAAGCATGCCCTATTCCAACAAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTAGAATTTATGACTAGGGTGAAGCATGCCCTATTCCAACAAAGT  850

seq1  ACTGGAGCAGAAAGGAAATTTTGAAGAATTTCTTCTAGCCAGGAAAAATG  900
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  ACTGGAGCAGAAAGG-AATTTTGAAGAATTTCTTCTAGCCAGG-AAAATG  898

seq1  TCAGAATGCACTCTCAGTTTCCATACTAAGGTAAGTCTTGAAGTATAAAA  950
      |||||||||||||||||||| |||||| |||||||||||| ||||| |||
seq2  TCAGAATGCACTCTCAGTTT-CATACT-AGGTAAGTCTTG-AGTAT-AAA  944

seq1  AAATGTATCCAAATAAATTATTATATTTTATAATTGTTTTTCTGAATAAC  1000
      ||||||||||||   |||||||||||||||| |||||||||||| |||  
seq2  AAATGTATCCAA--TAATTATTATATTTTAT-ATTGTTTTTCTG-ATA--  988

seq1  AATGCATATGAATGTGTGCATTCATTTGTTAATTCAACAAATATCTTTCA  1050
       ||||||||||  | ||||||||||||| | |||||||||   |||||||
seq2  CATGCATATGATGGGGTGCATTCATTTGGT-ATTCAACAATATTCTTTCA  1037

seq1  TAATATTGCCTTTCAGGATCTTATCAATAAGAATATAATAAAA  1093
      |||||||| ||||||||||| |||||   ||||| ||||||||
seq2  TAATATTG-CTTTCAGGATC-TATCA--TAGAAT-TAATAAAA  1075