BAC Information

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BAC

Clone NameB6Ng01-063H20
ChromosomeX (Build37)
Map Location 150,176,209 - 150,304,165
singlet/doubletdoublet
Overlap geneSmt3h1-ps, Spin2
Upstream geneShroom2, Gpr143, LOC100039874, LOC667147, EG624124, Usp51, LOC635253, Mageh1, EG385454, EG436240, Rragb, Klf8, LOC100039932, EG635136, Ubqln2, Cypt3, LOC100039998, LOC667241, Kctd12b, 2210013O21Rik
Downstream gene4921511M17Rik, OTTMUSG00000019268, LOC625650, LOC100040020, EG546397, OTTMUSG00000019256, EG434874, LOC635580, EG625767, LOC270665, LOC100040076, 4930524N10Rik, EG434879, LOC667313, 4930542N07Rik, EG434881, LOC100040899, LOC667331, LOC100040925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063H20.bB6Ng01-063H20.g
ACCDH883568DH883569
length1,110970
definitionDH883568|Mus musculus domesticus DNA, BAC clone: B6Ng01-063H20, 5' end.DH883569|Mus musculus domesticus DNA, BAC clone: B6Ng01-063H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(150,176,209 - 150,177,337)(150,303,646 - 150,304,165)
sequence
gaattctgtcttctgaatattaataaaggaaaagtacagtgttctgagta
cacagtagatctgaaagcaacatattaacaatcctatagagtctataaaa
cggtcatgtaatttgttcagataagtaattgaagctgacatatattttgg
gaaaagtgtgaaaggtgactctttgattcagaaaactgaaattagtccct
ggcctcagaaacaagaaatctaaaaaacaaaatcccaaatatacagttat
aataacttccattccagagttatacatcagagttatatatcagttaatac
atcctgagcaagtgcattaaagacactgtctttcatagcactttggaact
ttaaaactattgaagcagcacaaacattacaaacagaagtcatggacttt
ggaaacaaatgataactggaggtaggcatgttataggtccaatggtttag
tattgtacagatgatgtcagtctctacaatatccagtgtaacctgtctcc
aagtttgagttgccttctgaagttccacagtgacctgaaaatcgtaggaa
agcaatggacctagcatggccaagacatttgcagaatattctttttccag
atttgaaaaaagtactacagaaatacaatgaacaatggtgtggggataga
catattgattagtgagatattagccagcagcctagaaataaactctcgta
tttaaagacagcttctgaaaaggtgccaagcaagagtaaagaatggtgtt
ttgaccaaatgatgttgtgactagtgggaatccttgtgcaaaaggatgaa
gctaaatcttcactccacataacatccaaacctaacataaaatatatcaa
agcataaatgcgatggttacatatgaaattcttggaaagaaatgggaata
agtatttgtgggcgtgaattagctattttagaacagtgacgataaagaat
gtgggtaatttttatatagtaaagctcatatgttatttagcctaaaaata
cagtgtgatttgaaaacaccctcagtggagaaagtggtggtgagacttct
agcattttctacattttgctaatttaagcaaggtgtgtctagggtgagga
ggggtgtgtg
gaattcatttgtgctgagagatgtatgctgattttgtattctgctactta
atttgtatagaagttctagcaattttatggcatatttacatttgcctatg
tatagacacaagtcatctgcaaacatggataattcaccataatctttcat
atttatttgatgtcttatcactttggatatatgtgtgttgtattaaatga
gaatagtggacattgagaaattggtcctgtttgaaattagagaataaact
ctactttcttcagcatgatagtaactgtggtttgttactttggagtatgt
tcctcctgttaattttttgacactttttaaaaatcataaagggttttgaa
actaatccctttttaaatacttattgcaacaatcatatatgtttttatct
ttcattctgttggatatgctggattgcctttactcatttgcatgtgttgc
ccattcttgcatctttggagcaaccattcttgataatgttattttctgct
tcttagtgtatatttgtgtgtatgtgcatattcttcgcttatgtttgcaa
ctttattgaattgttttaaatctatgcttataagcttatatgatctatct
attgtaagaaatgaatagtttacacccataccataatatttgcttttatc
tcttataagtgcagccaatctttcacatttctgatttctagttgtatgat
gtatcttttttttcccacatatactttttcaatgattttagcttcctgta
gaaagcatatgattttggtctcattttttaatattttcagccgaatctag
gttttggaagtattagtctgatctttgagtcattgtttattattcatgaa
tatgaacttcgtttcactattttgggttactctggttgctttgcataaaa
tttttcctttacatctgttttagtattcccttctgtgatgggagtctttg
acatactttgtttattcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_150176209_150177337
seq2: B6Ng01-063H20.b_42_1151

seq1  GAATTCTGTCTTCTGAATATTAATAAAGGAAAAGTACAGTGTTCTGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTCTGAATATTAATAAAGGAAAAGTACAGTGTTCTGAGTA  50

seq1  CACAGTAGATCTGAAAGCAACATATTAACAATCCTATAGAGTCTATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGATCTGAAAGCAACATATTAACAATCCTATAGAGTCTATAAAA  100

seq1  CGGTCATGTAATTTGTTCAGATAAGTAATTGAAGCTGACATATATTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCATGTAATTTGTTCAGATAAGTAATTGAAGCTGACATATATTTTGG  150

seq1  GAAAAGTGTGAAAGGTGACTCTTTGATTCAGAAAACTGAAATTAGTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGTGAAAGGTGACTCTTTGATTCAGAAAACTGAAATTAGTCCCT  200

seq1  GGCCTCAGAAACAAGAAATCTAAAAAACAAAATCCCAAATATACAGTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCAGAAACAAGAAATCTAAAAAACAAAATCCCAAATATACAGTTAT  250

seq1  AATAACTTCCATTCCAGAGTTATACATCAGAGTTATATATCAGTTAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTCCATTCCAGAGTTATACATCAGAGTTATATATCAGTTAATAC  300

seq1  ATCCTGAGCAAGTGCATTAAAGACACTGTCTTTCATAGCACTTTGGAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAGCAAGTGCATTAAAGACACTGTCTTTCATAGCACTTTGGAACT  350

seq1  TTAAAACTATTGAAGCAGCACAAACATTACAAACAGAAGTCATGGACTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTATTGAAGCAGCACAAACATTACAAACAGAAGTCATGGACTTT  400

seq1  GGAAACAAATGATAACTGGAGGTAGGCATGTTATAGGTCCAATGGTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAATGATAACTGGAGGTAGGCATGTTATAGGTCCAATGGTTTAG  450

seq1  TATTGTACAGATGATGTCAGTCTCTACAATATCCAGTGTAACCTGTCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTACAGATGATGTCAGTCTCTACAATATCCAGTGTAACCTGTCTCC  500

seq1  AAGTTTGAGTTGCCTTCTGAAGTTCCACAGTGACCTGAAAATCGTAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGAGTTGCCTTCTGAAGTTCCACAGTGACCTGAAAATCGTAGGAA  550

seq1  AGCAATGGACCTAGCATGGCCAAGACATTTGCAGAATATTCTTTTTCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGGACCTAGCATGGCCAAGACATTTGCAGAATATTCTTTTTCCAG  600

seq1  ATTTGAAAAAAGTACTACAGAAATACAATGAACAATGGTGT-GGGATAGA  649
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATTTGAAAAAAGTACTACAGAAATACAATGAACAATGGTGTGGGGATAGA  650

seq1  CATATTGATTAGTGAGATATTAGCCAGCAGCCTAGAAATAAACTCTCGTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGATTAGTGAGATATTAGCCAGCAGCCTAGAAATAAACTCTCGTA  700

seq1  TTTAAAGACAGCTTCTGAAAAGGTGCCAAGCAAGAGTAAAGAATGGTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGACAGCTTCTGAAAAGGTGCCAAGCAAGAGTAAAGAATGGTGTT  750

seq1  TTGACCAAATGATGTTGTGACTAGTGGGAATCCTTGTGCAAAAGGATGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCAAATGATGTTGTGACTAGTGGGAATCCTTGTGCAAAAGGATGAA  800

seq1  GCTAAATCTTCACTCCACATAACATCCAAAACCTAACATAAAATATATCA  849
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTAAATCTTCACTCCACATAACATCC-AAACCTAACATAAAATATATCA  849

seq1  AAGGCATAAATGCGATGGTTACATATGAAATTCTTGGAAAGAAATGGGAA  899
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-GCATAAATGCGATGGTTACATATGAAATTCTTGGAAAGAAATGGGAA  898

seq1  TAAGTATTTGTGAGCGTGAATTAGCTATTTTAGAACAAGTGACGATAAAA  949
      |||||||||||| ||||||||||||||||||||||| ||||||||| |||
seq2  TAAGTATTTGTGGGCGTGAATTAGCTATTTTAGAAC-AGTGACGAT-AAA  946

seq1  GAATGTGGGTAATTTTTATATAGTACAGCTCCATATGTTAATTTAGCCTA  999
      ||||||||||||||||||||||||| |||| |||||||| ||||||||||
seq2  GAATGTGGGTAATTTTTATATAGTAAAGCT-CATATGTT-ATTTAGCCTA  994

seq1  AAAAAATTACAGTGTGATTTTAAAAAACACCCTCAGTGGAGGAAAGTGGT  1049
      ||||   |||||||||||||   ||||||||||||||||| |||||||||
seq2  AAAA---TACAGTGTGATTT--GAAAACACCCTCAGTGGA-GAAAGTGGT  1038

seq1  GGGTTGGAGACTTCTAGCATTTTCTACATTTCTGCTATATTAAAGCAAGG  1099
      ||    ||||||||||||||||||||||||| ||||| ||| ||||||  
seq2  GG---TGAGACTTCTAGCATTTTCTACATTT-TGCTA-ATTTAAGCAA--  1081

seq1  GGTGTGTCTTTAGGGTGAGGGGGTGGTGTG--  1129
      ||||||||  |||||||||| || ||||||  
seq2  GGTGTGTC--TAGGGTGAGGAGG-GGTGTGTG  1110

seq1: chrX_150303646_150304165
seq2: B6Ng01-063H20.g_65_584 (reverse)

seq1  CACACAAATATACACTAAGAAGCAGAAAATAACATTATCAAGAATGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAATATACACTAAGAAGCAGAAAATAACATTATCAAGAATGGTTG  50

seq1  CTCCAAAGATGCAAGAATGGGCAACACATGCAAATGAGTAAAGGCAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGATGCAAGAATGGGCAACACATGCAAATGAGTAAAGGCAATCC  100

seq1  AGCATATCCAACAGAATGAAAGATAAAAACATATATGATTGTTGCAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATCCAACAGAATGAAAGATAAAAACATATATGATTGTTGCAATAA  150

seq1  GTATTTAAAAAGGGATTAGTTTCAAAACCCTTTATGATTTTTAAAAAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAAAAAGGGATTAGTTTCAAAACCCTTTATGATTTTTAAAAAGTG  200

seq1  TCAAAAAATTAACAGGAGGAACATACTCCAAAGTAACAAACCACAGTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAATTAACAGGAGGAACATACTCCAAAGTAACAAACCACAGTTAC  250

seq1  TATCATGCTGAAGAAAGTAGAGTTTATTCTCTAATTTCAAACAGGACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGCTGAAGAAAGTAGAGTTTATTCTCTAATTTCAAACAGGACCAA  300

seq1  TTTCTCAATGTCCACTATTCTCATTTAATACAACACACATATATCCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAATGTCCACTATTCTCATTTAATACAACACACATATATCCAAAG  350

seq1  TGATAAGACATCAAATAAATATGAAAGATTATGGTGAATTATCCATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGACATCAAATAAATATGAAAGATTATGGTGAATTATCCATGTTT  400

seq1  GCAGATGACTTGTGTCTATACATAGGCAAATGTAAATATGCCATAAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGACTTGTGTCTATACATAGGCAAATGTAAATATGCCATAAAATT  450

seq1  GCTAGAACTTCTATACAAATTAAGTAGCAGAATACAAAATCAGCATACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACTTCTATACAAATTAAGTAGCAGAATACAAAATCAGCATACAT  500

seq1  CTCTCAGCACAAATGAATTC  520
      ||||||||||||||||||||
seq2  CTCTCAGCACAAATGAATTC  520