BAC Information

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BAC

Clone NameB6Ng01-063O18
Chromosome3 (Build37)X (Build37)
Map Location 41,059,197 - 41,059,72015,070,632 - 15,071,714
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063O18.bB6Ng01-063O18.g
ACCDH883868DH883869
length9391,073
definitionDH883868|Mus musculus domesticus DNA, BAC clone: B6Ng01-063O18, 5' end.DH883869|Mus musculus domesticus DNA, BAC clone: B6Ng01-063O18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,197 - 41,059,720)(15,070,632 - 15,071,714)
sequence
gaattgtttgttcaggtgtgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcctattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagagcaagccattgctgtt
ctgttcaggaatctttcccctgtacccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
cctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttcatcttc
tgggatcttctttaatttctttctttcagagacttgaagtttttatcata
cagatctttacttccttagtagagtcacgccgagatatt
gaattccacaggtttgtttgtttgtttgtttttgcatgcttttatatttt
ggtatttgtcttagtttagcttttgattgctgtgatgaaatacaatgacc
aaaagcaacttgagtaggaaagagtgtgtcttatggtgccatatcactgt
ttatcattgaagggagtcaggacagttattcaaaacagtgcaagatcctg
gaggcaggaggttgtacagagaccatggatgggtgctgcttactggcttg
ctcatcatggcttgctcagcctgctttctcatagaacccaggaccaccag
cccaggtatggcaccgcctataatatgccacccatcaattccaaattaag
aaaataccctacaatcttgcctacagtgcaatcttatgggaatttctcaa
ttgaggtttcttgcttttagcttgtgtcaagttgagatacaactagccag
cacagtgtattttgttttgttttgttttgtttgctcatttgtggtggtgt
ttattaattttctaggtattgatttttttttgtattgcttttttgtaaaa
ataaaatttaggtgggtaagaagggtttggaaggacttgagggaagagaa
aaatataatcaaaataacatttaaatttaaattttggtttaattcctcag
agacctagggtagaaccaaacttgactgacaaaaaaatgtcaatgaaatt
ataacaaatggtattctgctattctcatagattggtacctagaccactca
ttcatcatcatagaggcttcttcaagcagctgatggaaacaatatggaac
aaacattagatagaacttcagaaacctcacagaagaaaggggagatatag
atttaggagccagagagtcagagaatactaggggaacacatcccatagat
atcaattaattaaggttcataggggctcagaacactcaagtagcggtccc
aggctgtcatgggtctatgtagatccttcggattcatgctatgatggtta
gctggggtttggtgactttctactgtgaaggtggtatgtctctgactctc
tgcttgccacttggaaccttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059197_41059720
seq2: B6Ng01-063O18.b_64_588 (reverse)

seq1  AATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGAT  50
      ||||||||||||||| |||||| ||| |||||||||||||||||||||||
seq2  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCA  100
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCA  100

seq1  ACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATT  150
      |||| |||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACAATTGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATC  150

seq1  GATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
      ||||||  | ||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200

seq1  ACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      ||  ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCA  300
      ||||||||||||||||||  |||||||||| ||||||| | |||||||||
seq2  AAAGCCTTGAAGATATGGGTACAGGGGAAAGATTCCTGAACAGAACAGCA  300

seq1  ATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACT  350
      ||||||||  ||||||||| |||||| |||||||||||||| ||||||||
seq2  ATGGCTTGCTCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACT  350

seq1  GCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG-GCAC  399
       ||||| |||||||||||||||||||||||||||| |||||||||  |||
seq2  CCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAGGACAAAAAGACCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  450

seq1  ATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAA  499
      |||||||| |||||| ||||||||||||||||||| | ||||||||||||
seq2  ATATCCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAA  500

seq1  TAACCCCATTAAAAAATGGGGCTCA  524
      |||||||||||||||||||||||||
seq2  TAACCCCATTAAAAAATGGGGCTCA  525

seq1: chrX_15070632_15071714
seq2: B6Ng01-063O18.g_66_1138 (reverse)

seq1  GAAAAGGGTCCCAAGT-GCAAGCAAGAAGAGTCAGAGACATACCAACTTC  49
      ||||| ||| |||||| |||||||   |||||||||||||||||| ||| 
seq2  GAAAA-GGTTCCAAGTGGCAAGCA--GAGAGTCAGAGACATACCACCTT-  46

seq1  CACAGTTAGAAGTTCAACAAAACCCCAAGCTAAACAATCATAGCATGTAT  99
      ||||| |||||  ||| ||||  ||| |||| ||| ||||||||||| ||
seq2  CACAG-TAGAAAGTCACCAAA--CCCCAGCT-AACCATCATAGCATGAAT  92

seq1  CCGAAGGATCTAACATAGACCCATGACAGCCCTGGGACCGCTACTTGAGT  149
      ||||||||||| ||||||||||||||||| ||||||||||||||||||||
seq2  CCGAAGGATCT-ACATAGACCCATGACAG-CCTGGGACCGCTACTTGAGT  140

seq1  GTTTCTGAGCCCCTATGAACCTTAATTAATTGATATCTATGGGATGTGTT  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TTCTGAGCCCCTATGAACCTTAATTAATTGATATCTATGGGATGTGTT  189

seq1  CCCCTAGTATTCTCTGACTCTCTGGCTCCTAAATCTATATCTCCCCTTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGTATTCTCTGACTCTCTGGCTCCTAAATCTATATCTCCCCTTTC  239

seq1  TTCTGTGAGGTTTCTGAAGTTCTATCTAATGTTTGTTCCATATTGTTTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGGTTTCTGAAGTTCTATCTAATGTTTGTTCCATATTGTTTCC  289

seq1  ATCAGCTGCTTGAAGAAGCCTCTATGATGATGAATGAGTGGTCTAGGTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGCTTGAAGAAGCCTCTATGATGATGAATGAGTGGTCTAGGTAC  339

seq1  CAATCTATGAGAATAGCAGAATACCATTTGTTATAATTTCATTGACATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTATGAGAATAGCAGAATACCATTTGTTATAATTTCATTGACATTT  389

seq1  TTTTGTCAGTCAAGTTTGGTTCTACCCTAGGTCTCTGAGGAATTAAACCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCAGTCAAGTTTGGTTCTACCCTAGGTCTCTGAGGAATTAAACCA  439

seq1  AAATTTAAATTTAAATGTTATTTTGATTATATTTTTCTCTTCCCTCAAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAATTTAAATGTTATTTTGATTATATTTTTCTCTTCCCTCAAGT  489

seq1  CCTTCCAAACCCTTCTTACCCACCTAAATTTTATTTTTACAAAAAAGCAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAAACCCTTCTTACCCACCTAAATTTTATTTTTACAAAAAAGCAA  539

seq1  TACAAAAAAAAATCAATACCTAGAAAATTAATAAACACCACCACAAATGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAAAAAATCAATACCTAGAAAATTAATAAACACCACCACAAATGA  589

seq1  GCAAACAAAACAAAACAAAACAAAATACACTGTGCTGGCTAGTTGTATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAAAACAAAACAAAACAAAATACACTGTGCTGGCTAGTTGTATCT  639

seq1  CAACTTGACACAAGCTAAAAGCAAGAAACCTCAATTGAGAAATTCCCATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGACACAAGCTAAAAGCAAGAAACCTCAATTGAGAAATTCCCATA  689

seq1  AGATTGCACTGTAGGCAAGATTGTAGGGTATTTTCTTAATTTGGAATTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCACTGTAGGCAAGATTGTAGGGTATTTTCTTAATTTGGAATTGA  739

seq1  TGGGTGGCATATTATAGGCGGTGCCATACCTGGGCTGGTGGTCCTGGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGCATATTATAGGCGGTGCCATACCTGGGCTGGTGGTCCTGGGTT  789

seq1  CTATGAGAAAGCAGGCTGAGCAAGCCATGATGAGCAAGCCAGTAAGCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGAAAGCAGGCTGAGCAAGCCATGATGAGCAAGCCAGTAAGCAGC  839

seq1  ACCCATCCATGGTCTCTGTACAACCTCCTGCCTCCAGGATCTTGCACTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCCATGGTCTCTGTACAACCTCCTGCCTCCAGGATCTTGCACTGT  889

seq1  TTTGAATAACTGTCCTGACTCCCTTCAATGATAAACAGTGATATGGCACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATAACTGTCCTGACTCCCTTCAATGATAAACAGTGATATGGCACC  939

seq1  ATAAGACACACTCTTTCCTACTCAAGTTGCTTTTGGTCATTGTATTTCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACACACTCTTTCCTACTCAAGTTGCTTTTGGTCATTGTATTTCAT  989

seq1  CACAGCAATCAAAAGCTAAACTAAGACAAATACCAAAATATAAAAGCATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAATCAAAAGCTAAACTAAGACAAATACCAAAATATAAAAGCATG  1039

seq1  CAAAAACAAACAAACAAACAAACCTGTGGAATTC  1083
      ||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAACAAACAAACAAACCTGTGGAATTC  1073