BAC Information

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BAC

Clone NameB6Ng01-064J20
ChromosomeX (Build37)
Map Location 83,502,339 - 83,615,943
singlet/doubletdoublet
Overlap geneLOC667841, LOC236427, EG667852, EG436212, Gm41
Upstream gene1600014K23Rik, Map3k7ip3, Gyk, LOC100042350, LOC629340, LOC100041562, 5430427O19Rik, 1700072E05Rik, Nr0b1, CN716893
Downstream geneEG629374, EG637027, Il1rapl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064J20.bB6Ng01-064J20.g
ACCDH884347DH884348
length1,151916
definitionDH884347|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J20, 5' end.DH884348|Mus musculus domesticus DNA, BAC clone: B6Ng01-064J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,614,764 - 83,615,943)(83,502,339 - 83,503,235)
sequence
gaattcatatgttccaagtatttgatgatattcagtaagataatatgaag
tagattaagaaatagctaggaaacatgaaagaaagatattctaaatatat
taaggtttcaatgaatgttttcatttagttcttgtcctttcaatgatgtc
agagatgtaacctggctcttgcttattgcattaaagtatgtatgaaaaat
taaatcatggagaagtggatatctttttaaaggtacatgctttatgcaaa
cataatcttaataacttctctagaggaattatcaccatttttactggaaa
tgtgtagtgaaaaaagcaggagatgtggcatatgcagtgctagactctga
gagactctcattattgcagagaggacactaaggtctctgcttcctgaaga
aataataaatgggtgatgtttgcttcaacagaaatatttttccatatgcc
ttgctaattatcttcaggtaaggtcttattttttctttttgttcctgacc
ttctgtagaatttttttaggcaaaaaaaaaaaagatggagaaaagtgtgg
atagtaatgaatcaggttaaagggtacacatttataaatgatactttcag
tatgagagaaatgcaacaacagacctgttgtattatacacatgtatcccc
atcatacaagaaagaaattatcaaaatcacttctcaatagagagaagagg
cttacaaatctaaatgatcccatttttagtcaagttcccatgtaagttga
cagagtcaaggttagacatgtgctttagagactaaactactccattcctc
ttatgctgagacactgtgtctcttatttcatttcatttttggtattaata
gcttaatgcatcgtaatagttcacactgcttccagttctattatggactg
tatgccctcttctgggctctgcagcacctatacatacagcatacacatat
gccctcacaattctaagggatatcacagccccaggagtagcattctcatg
tcatgtaagaaaggattgctgggctctgatagaagaatagctaatattcc
atagcatcaatagcatcatgcatcaatgagaacgaaaattggaagcttaa
tttctgaaccagttacagaaggagtcaccttaagatcctgcctatgtatc
c
gaattcctcctctagcaaaatttaaggctgctcccattcctttgtgacct
cacttccctgaaattttccaggaagaaatcaagcttaacatattgttcta
aattggaattcctagggaatacagagctgaatattttgtagtagctacac
aagggagcctttctaggatgcacactacatggagttcacagtcacatgct
gacccggacaaatggcctgttttgggacttctctggctttcctattaaac
gttgtttctccctaagagttctaagttaaaagtgggaaagtccttttgtt
catgtcaagaatggataacaaggatcacttgtatcccatgtatctttcta
ctagtcctgatttatgctcattacattttaaaatatttatttacaggaca
gtttctttttaaattattttatttatttacatcctgaatgttgctccccc
tcccagagttcttaaccccatttcccctccttcacctctgagagggcact
cctcacacttcagacatcccccttccctgagccatcaactctttacagga
ttgggtgcatcctctcccactgaggccaaacaaggcaggcctctgctaca
tatgtgccagaggcctcagaccagaccatatatgcccattggttggtgac
taattctctgagagcacccaggggtccaggttcgttaacattgttggtct
tcctatggggttgcaatcccctctatctctttctatccttcccctagctc
ttccataggggtccccgatcccagtacagtgggttggctgtgggtatctg
catatttcagtcagctgctggtagagccactcgaaaaacagctatgctta
ggctcctatctacaagcacagcatagcatcagtaatagtatcggggtttg
atgcccaaccatcaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_83614764_83615943
seq2: B6Ng01-064J20.b_49_1199 (reverse)

seq1  GGATACATAGACGAGGATCTGTAAGATGACCTTCCTTCTCTGTTTACCTT  50
      |||||||||| | ||||||| |||| ||||  ||||||    | || || 
seq2  GGATACATAGGC-AGGATCT-TAAGGTGAC--TCCTTC----TGTAACT-  41

seq1  TGGGTCCAG-AATATAGCTTTTCAAATGTTTCTGTTCTACTTGGATTTGC  99
        ||| ||| |||  |||  ||| ||| |||| |||||  |||    |||
seq2  --GGTTCAGAAATTAAGC--TTCCAAT-TTTC-GTTCTCATTG---ATGC  82

seq1  ATGATGCTATTTGATGCTATTGGGGAAATATTAGCTTATTCTTTCCTATC  149
      ||||||||| ||||||||||    | ||||||||| |||||||  |||||
seq2  ATGATGCTA-TTGATGCTAT----GGAATATTAGC-TATTCTT--CTATC  124

seq1  AGAGCCCAGCAATCCTTTCTTACATGACATGAGAATGCTACTCCTGGGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCAGCAATCCTTTCTTACATGACATGAGAATGCTACTCCTGGGGC  174

seq1  TGTGATATCCCTTAGAATTTGTGAGGGCATATGTGTATGCCTTGTATGTA  249
      ||||||||||||||||| ||||||||||||||||||||||  ||||||||
seq2  TGTGATATCCCTTAGAA-TTGTGAGGGCATATGTGTATGC--TGTATGTA  221

seq1  TAGGTGCTTGCAGAGCCCAGAAGAGGGCATACAGTCCATAATAGAACTGG  299
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGC-TGCAGAGCCCAGAAGAGGGCATACAGTCCATAATAGAACTGG  270

seq1  AGGCAGTGTGAACTATTACGATGCATTAAGCTATTAATACCAAAAATGAA  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTGTGAACTATTACGATGCATTAAGCTATTAATACCAAAAATGAA  320

seq1  ATGAAATAAGAGACACAGTGTCTCAGCATAAGAGGAATGGAGTAGTTTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAAGAGACACAGTGTCTCAGCATAAGAGGAATGGAGTAGTTTAG  370

seq1  TCTCTAAAGCACATGTCTAACCTTGACTCTGTCAACTTACATGGGAACTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAAGCACATGTCTAACCTTGACTCTGTCAACTTACATGGGAACTT  420

seq1  GACTAAAAATGGGATCATTTAGATTTGTAAGCCTCTTCTCTCTATTGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAAATGGGATCATTTAGATTTGTAAGCCTCTTCTCTCTATTGAGA  470

seq1  AGTGATTTTGATAATTTCTTTCTTGTATGATGGGGATACATGTGTATAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTTGATAATTTCTTTCTTGTATGATGGGGATACATGTGTATAAT  520

seq1  ACAACAGGTCTGTTGTTGCATTTCTCTCATACTGAAAGTATCATTTATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGGTCTGTTGTTGCATTTCTCTCATACTGAAAGTATCATTTATAA  570

seq1  ATGTGTACCCTTTAACCTGATTCATTACTATCCACACTTTTCTCCATCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACCCTTTAACCTGATTCATTACTATCCACACTTTTCTCCATCTT  620

seq1  TTTTTTTTTTGCCTAAAAAAATTCTACAGAAGGTCAGGAACAAAAAGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGCCTAAAAAAATTCTACAGAAGGTCAGGAACAAAAAGAAA  670

seq1  AAATAAGACCTTACCTGAAGATAATTAGCAAGGCATATGGAAAAATATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGACCTTACCTGAAGATAATTAGCAAGGCATATGGAAAAATATTT  720

seq1  CTGTTGAAGCAAACATCACCCATTTATTATTTCTTCAGGAAGCAGAGACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAAGCAAACATCACCCATTTATTATTTCTTCAGGAAGCAGAGACC  770

seq1  TTAGTGTCCTCTCTGCAATAATGAGAGTCTCTCAGAGTCTAGCACTGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTCCTCTCTGCAATAATGAGAGTCTCTCAGAGTCTAGCACTGCAT  820

seq1  ATGCCACATCTCCTGCTTTTTTCACTACACATTTCCAGTAAAAATGGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCACATCTCCTGCTTTTTTCACTACACATTTCCAGTAAAAATGGTGA  870

seq1  TAATTCCTCTAGAGAAGTTATTAAGATTATGTTTGCATAAAGCATGTACC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCTCTAGAGAAGTTATTAAGATTATGTTTGCATAAAGCATGTACC  920

seq1  TTTAAAAAGATATCCACTTCTCCATGATTTAATTTTTCATACATACTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAGATATCCACTTCTCCATGATTTAATTTTTCATACATACTTTA  970

seq1  ATGCAATAAGCAAGAGCCAGGTTACATCTCTGACATCATTGAAAGGACAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATAAGCAAGAGCCAGGTTACATCTCTGACATCATTGAAAGGACAA  1020

seq1  GAACTAAATGAAAACATTCATTGAAACCTTAATATATTTAGAATATCTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAATGAAAACATTCATTGAAACCTTAATATATTTAGAATATCTTT  1070

seq1  CTTTCATGTTTCCTAGCTATTTCTTAATCTACTTCATATTATCTTACTGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGTTTCCTAGCTATTTCTTAATCTACTTCATATTATCTTACTGA  1120

seq1  ATATCATCAAATACTTGGAACATATGAATTC  1180
      |||||||||||||||||||||||||||||||
seq2  ATATCATCAAATACTTGGAACATATGAATTC  1151

seq1: chrX_83502339_83503235
seq2: B6Ng01-064J20.g_69_966

seq1  GAATTCCTCCTCTAGCAAAATTTAAGGCTGCTCCCATTCCTTTGTGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTCTAGCAAAATTTAAGGCTGCTCCCATTCCTTTGTGACCT  50

seq1  CACTTCCCTGAAATTTTCCAGGAAGAAATCAAGCTTAACATATTGTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCCCTGAAATTTTCCAGGAAGAAATCAAGCTTAACATATTGTTCTA  100

seq1  AATTGGAATTCCTAGGGAATACAGAGCTGAATATTTTGTAGTAGCTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAATTCCTAGGGAATACAGAGCTGAATATTTTGTAGTAGCTACAC  150

seq1  AAGGGAGCCTTTCTAGGATGCACACTACATGGAGTTCACAGTCACATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGCCTTTCTAGGATGCACACTACATGGAGTTCACAGTCACATGCT  200

seq1  GACCCGGACAAATGGCCTGTTTTGGGACTTCTCTGGCTTTCCTATTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCGGACAAATGGCCTGTTTTGGGACTTCTCTGGCTTTCCTATTAAAC  250

seq1  GTTGTTTCTCCCTAAGAGTTCTAAGTTAAAAGTGGGAAAGTCCTTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTCTCCCTAAGAGTTCTAAGTTAAAAGTGGGAAAGTCCTTTTGTT  300

seq1  CATGTCAAGAATGGATAACAAGGATCACTTGTATCCCATGTATCTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAAGAATGGATAACAAGGATCACTTGTATCCCATGTATCTTTCTA  350

seq1  CTAGTCCTGATTTATGCTCATTACATTTTAAAATATTTATTTACAGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCCTGATTTATGCTCATTACATTTTAAAATATTTATTTACAGGACA  400

seq1  GTTTCTTTTTAAATTATTTTATTTATTTACATCCTGAATGTTGCTCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTTTAAATTATTTTATTTATTTACATCCTGAATGTTGCTCCCCC  450

seq1  TCCCAGAGTTCTTAACCCCATTTCCCCTCCTTCACCTCTGAGAGGGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGTTCTTAACCCCATTTCCCCTCCTTCACCTCTGAGAGGGCACT  500

seq1  CCTCACACTTCAGACATCCCCCTTCCCTGAGCCATCAACTCTTTACAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACTTCAGACATCCCCCTTCCCTGAGCCATCAACTCTTTACAGGA  550

seq1  TTGGGTGCATCCTCTCCCACTGAGGCCAAACAAGGCAGGCCTCTGCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGCATCCTCTCCCACTGAGGCCAAACAAGGCAGGCCTCTGCTACA  600

seq1  TATGTGCCAGAGGCCTCAGACCAGACCATATATGCCCATTGGTTGGTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCCAGAGGCCTCAGACCAGACCATATATGCCCATTGGTTGGTGAC  650

seq1  TAATTCTCTGAGAGCACCCAGGGGTCCAGGTTCGTTAACATTGTTGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCTGAGAGCACCCAGGGGTCCAGGTTCGTTAACATTGTTGGTCT  700

seq1  TCCTATGGGGTTGCAATCCCCTCTATCTCTTTCTATCCTTCCCCTAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGGGGTTGCAATCCCCTCTATCTCTTTCTATCCTTCCCCTAGCTC  750

seq1  TTCCATAGGGGTCCCCGATCCCAGTACAGT-GGTTGGCTGTGGGTATCTG  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCCATAGGGGTCCCCGATCCCAGTACAGTGGGTTGGCTGTGGGTATCTG  800

seq1  CATATTTCAGTCAGCTGCTGGTAGAGCCACTCGAAAAACAGCTATGCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTCAGTCAGCTGCTGGTAGAGCCACTCGAAAAACAGCTATGCTTA  850

seq1  GGCTCCTATCTACAAGCACAGCATAGCATCAGTAATAGTATCGGGGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTATCTACAAGCACAGCATAGCATCAGTAATAGTATCGGGGTT  898