BAC Information

Click to search

BAC

Clone NameB6Ng01-065O11
ChromosomeX (Build37)
Map Location 94,241,068 - 94,377,946
singlet/doubletdoublet
Overlap geneLOC668238, Pgr15l
Upstream geneMsn, Psmb7-ps1, LOC668221, Vsig4, B230358A15Rik, Heph, Gpr165, LOC675824, LOC668234, EG668236
Downstream geneEda2r, LOC668244, Ar
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065O11.bB6Ng01-065O11.g
ACCDH885244DH885245
length1,088340
definitionDH885244|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O11, 5' end.DH885245|Mus musculus domesticus DNA, BAC clone: B6Ng01-065O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,376,856 - 94,377,946)(94,241,068 - 94,241,407)
sequence
gaattcttggcaacaagtgaattttacccactgagccatttcactgtttc
ttctttgcttctttaagtgatcactgtattttactgactcatatgttgtt
tgtggcacataatacctgacacccacacatttggacatttttctcttaac
atttatttgctttgatctggaattttaacttcttagattttcagttgtgt
ttgtaatagagcaaagcattcaattatttaatatgtcagataataaaaac
agcagcaagtgatttctttctctaggcatatgtaaaagttgctgccctat
ggctctgtcagggacatgtgaaaggctgagcatgattgctttttaccagg
tttctcatagaggttagagaattgggtacaaaatgttccagctccttata
agtagatagaaactttaaaaacaactcaagttggcaagagtattaattca
aggatctcaatctggatgtactcaagcatgctgggaaatgtctattcggg
ctttagtgcctcctggtttcattaatgccctcttcttccaaaactagctg
ctcaagaggctgtaaaggggactataaccatgaacaatgaatcttcctga
ttaaaatgatggtggaaaattgctcctcttaccatgtatgtgaaccactc
attgttggtatctttcacttagtgctcgggatatctttttatgtgtattt
ttcttcttctctagcagaaaaaaaatgtagtttctgagggcagcaaattc
agctctttcggtagttctcttataagaacatacagcagctatcacctttg
cccatagtaggaacttatcattcaactcagttactaatccccctacacca
ctcatttcaaatgcagacccacaaccagaatgctcagttctatgaattta
ggaaaatcccctacccagcctggaaaatctcatacatattattacagctc
aagtgactcttgctgttctaggacctgattggatcagtgtgtttggtggc
tggggtgtgaagtaaagaaccaaagaataataaatgaagtcttatctctg
aaaactaattattcaaagactggttctctcccaaatct
ttctctacagttatggtagaattcaaccatgaatctttgggggcttggga
gtttttttttatttagagatattttagtacatatgtttttatgatttcag
atatatttaacttgtttaatctcaactagatttaactttgtaggtcatat
gcatctggaaagccacccacgttttttcaaagttagaggaatataggctt
ttaaatatatttgtttgtttatttgtttatgtttgtgcctatgtgttggt
ttgaatgaaaatggcccccatagactcataggaagggcattattggaggt
gtggccttggagtgttggaggaagtatatgggagggtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_94376856_94377946
seq2: B6Ng01-065O11.b_48_1135 (reverse)

seq1  AGATTT-GGAGAGAACAAGTGCTTTGAATTATATAGTTTTCAGAGATAAG  49
      |||||| ||||||||| ||| |||||||| || |||||||||||||||||
seq2  AGATTTGGGAGAGAACCAGT-CTTTGAATAAT-TAGTTTTCAGAGATAAG  48

seq1  ACCTCATTTATTTATCTTTGTATCTTTACTTCACACCCCAGGCACCAAAC  99
      || |||||||||  ||||||  ||||||||||||||||||| ||||||||
seq2  ACTTCATTTATTATTCTTTGGTTCTTTACTTCACACCCCAGCCACCAAAC  98

seq1  ACACTGATCCAATCAGGTCCTTAGAACAGCAAGAGTCACTTGAGCTGTAA  149
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACACTGATCCAATCAGGTCC-TAGAACAGCAAGAGTCACTTGAGCTGTAA  147

seq1  TAATATGTATGAGATTTTCCAGGCTGGGTAGGGGATTTTTCCTAAATTCA  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAATATGTATGAGATTTTCCAGGCTGGGTAGGGGA-TTTTCCTAAATTCA  196

seq1  TAGAACTGAGCATTCTGGTTGTGGGTCTGCATTTGAAATGAGTGGTGTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTGAGCATTCTGGTTGTGGGTCTGCATTTGAAATGAGTGGTGTAG  246

seq1  GGGGATTAGTAACTGAGTTGAATGATAAGTTCCTACTATGGGCAAAGGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTAGTAACTGAGTTGAATGATAAGTTCCTACTATGGGCAAAGGTG  296

seq1  ATAGCTGCTGTATGTTCTTATAAGAGAACTACCGAAAGAGCTGAATTTGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGCTGTATGTTCTTATAAGAGAACTACCGAAAGAGCTGAATTTGC  346

seq1  TGCCCTCAGAAACTACATTTTTTTTCTGCTAGAGAAGAAGAAAAATACAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAGAAACTACATTTTTTTTCTGCTAGAGAAGAAGAAAAATACAC  396

seq1  ATAAAAAGATATCCCGAGCACTAAGTGAAAGATACCAACAATGAGTGGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGATATCCCGAGCACTAAGTGAAAGATACCAACAATGAGTGGTT  446

seq1  CACATACATGGTAAGAGGAGCAATTTTCCACCATCATTTTAATCAGGAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATGGTAAGAGGAGCAATTTTCCACCATCATTTTAATCAGGAAG  496

seq1  ATTCATTGTTCATGGTTATAGTCCCCTTTACAGCCTCTTGAGCAGCTAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTGTTCATGGTTATAGTCCCCTTTACAGCCTCTTGAGCAGCTAGT  546

seq1  TTTGGAAGAAGAGGGCATTAATGAAACCAGGAGGCACTAAAGCCCGAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAGAAGAGGGCATTAATGAAACCAGGAGGCACTAAAGCCCGAATA  596

seq1  GACATTTCCCAGCATGCTTGAGTACATCCAGATTGAGATCCTTGAATTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTCCCAGCATGCTTGAGTACATCCAGATTGAGATCCTTGAATTAA  646

seq1  TACTCTTGCCAACTTGAGTTGTTTTTAAAGTTTCTATCTACTTATAAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTGCCAACTTGAGTTGTTTTTAAAGTTTCTATCTACTTATAAGGA  696

seq1  GCTGGAACATTTTGTACCCAATTCTCTAACCTCTATGAGAAACCTGGTAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAACATTTTGTACCCAATTCTCTAACCTCTATGAGAAACCTGGTAA  746

seq1  AAAGCAATCATGCTCAGCCTTTCACATGTCCCTGACAGAGCCATAGGGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATCATGCTCAGCCTTTCACATGTCCCTGACAGAGCCATAGGGCA  796

seq1  GCAACTTTTACATATGCCTAGAGAAAGAAATCACTTGCTGCTGTTTTTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTTACATATGCCTAGAGAAAGAAATCACTTGCTGCTGTTTTTAT  846

seq1  TATCTGACATATTAAATAATTGAATGCTTTGCTCTATTACAAACACAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACATATTAAATAATTGAATGCTTTGCTCTATTACAAACACAACT  896

seq1  GAAAATCTAAGAAGTTAAAATTCCAGATCAAAGCAAATAAATGTTAAGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTAAGAAGTTAAAATTCCAGATCAAAGCAAATAAATGTTAAGAG  946

seq1  AAAAATGTCCAAATGTGTGGGTGTCAGGTATTATGTGCCACAAACAACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTCCAAATGTGTGGGTGTCAGGTATTATGTGCCACAAACAACAT  996

seq1  ATGAGTCAGTAAAATACAGTGATCACTTAAAGAAGCAAAGAAGAAACAGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCAGTAAAATACAGTGATCACTTAAAGAAGCAAAGAAGAAACAGT  1046

seq1  GAAATGGCTCAGTGGGTAAAATTCACTTGTTGCCAAGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGCTCAGTGGGTAAAATTCACTTGTTGCCAAGAATTC  1088

seq1: chrX_94241068_94241407
seq2: B6Ng01-065O11.g_75_414

seq1  TTCTCTACAGTTATGGTAGAATTCAACCATGAATCTTTGGGGGCTTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACAGTTATGGTAGAATTCAACCATGAATCTTTGGGGGCTTGGGA  50

seq1  GTTTTTTTTTATTTAGAGATATTTTAGTACATATGTTTTTATGATTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTATTTAGAGATATTTTAGTACATATGTTTTTATGATTTCAG  100

seq1  ATATATTTAACTTGTTTAATCTCAACTAGATTTAACTTTGTAGGTCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTAACTTGTTTAATCTCAACTAGATTTAACTTTGTAGGTCATAT  150

seq1  GCATCTGGAAAGCCACCCACGTTTTTTCAAAGTTAGAGGAATATAGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGGAAAGCCACCCACGTTTTTTCAAAGTTAGAGGAATATAGGCTT  200

seq1  TTAAATATATTTGTTTGTTTATTTGTTTATGTTTGTGCCTATGTGTTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATATTTGTTTGTTTATTTGTTTATGTTTGTGCCTATGTGTTGGT  250

seq1  TTGAATGAAAATGGCCCCCATAGACTCATAGGAAGGGCATTATTGGAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAAAATGGCCCCCATAGACTCATAGGAAGGGCATTATTGGAGGT  300

seq1  GTGGCCTTGGAGTGTTGGAGGAAGTATATGGGAGGGTGTG  340
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTGGAGTGTTGGAGGAAGTATATGGGAGGGTGTG  340