BAC Information

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BAC

Clone NameB6Ng01-066N04
ChromosomeX (Build37)
Map Location 50,603,278 - 50,718,191
singlet/doubletdoublet
Overlap gene4632404H22Rik, 4930432H15Rik, LOC385527, Mospd1
Upstream geneGpc3, Kis2, LOC100041925, LOC665929, 6330534C20Rik, LOC624936, LOC546298, LOC100040569, Phf6, Hprt1, C430049B03Rik, Plac1
Downstream geneLOC100040609, Etd, Cxx1c, LOC100040644, Cxx1a, Cxx1b, AW822252, 4930502E18Rik, 1700013H16Rik, EG547172, Zfp36l3, Xlr, LOC100040719, LOC100040730, LOC100040260, LOC100040271, LOC100040765, LOC194788, LOC100040789, LOC666072, LOC100040317, LOC625476, LOC625508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066N04.bB6Ng01-066N04.g
ACCDH885891DH885892
length1,1041,035
definitionDH885891|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N04, 5' end.DH885892|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,717,075 - 50,718,191)(50,603,278 - 50,604,313)
sequence
gaattcatactttgttgctaggttttcaacatgaaggagaaagggctttt
atactagagtctaaagcagtaaaatttattactcttacctaatttgcatt
ttcttggtttttagtacccggtggtggaggactaagatagctcctgtact
gagataaaagtaaaggaggggctgagaaacagaatcagtatctaacgcca
gagaaaagtgcggagtttaagtagctggtcctctgtggctacgcagatgg
gttagtaattcccatgggggctccattttcctaaaaggggacggggagaa
tacacttcaatatagtttccttgcttgctaaatgatagtcccggtgttct
aaatctatagtgttgaagtctatagaaactcccctgctcattccagagtc
ttgtcttatcctttctctgttcaatgcaaagtgaggaaaacagcaaatga
tcccaactgtgggcaaggagcttctttggaccaacagcagatctggtggc
atccaccagtgatccctgcattcagaaggcaggagcaggaagacctgtag
tttgaacctagcatgggctagatagcaaacccctgcctcagacaagcagg
ataaaacacccagtgtttacattgcatcctgtgggagagcagttttaaat
cagtcacaaggtggtgtgtacacataaggttttctttctaattttaatta
ggaatgaatgttctgtactttcagggagagggtcaaagactaggcacttt
cccacatcttttcacagcaggactgcctgcctttatggtcaggggcatgt
tggagcctcatggtttataaacactgctggcccagattgactcagaggca
acggaagggaagcagaaggcaggggtagggccttctaattgagatgctga
ggaaataaatactataaaggatatgagtagacatatatttctgtcctaat
gccctgtgcaagtctgggaaaatatcttttttaaaaagatttatttattt
attatatgtaagtacactgtagctgtcttcgaccctccaaagaggcatca
gttttgtaacgatggtttgagcaccatgtggttgctgggattgaactctg
acct
gaattcttaatataaaaaaaaaaatcaatcaaagtaccatacaaggcata
cttctaaattatgctcaaactcttgatgttcacaaatactaaatataaaa
aggcataattccagctttgtagttagcaatgttcccttcattctgttgac
agtgacttcaagattttgtaattttagggggaaaaaaaggaaataaaaag
tatgcccaaatggacacaaagcctaaatggatttacattcaaagttctaa
tttaatttatacttcaaagacgtcagttttaaagattattaagtagcaca
taaactttaaagactataaaatgcatcttttccttctctttgtggtatgg
gacagggaataaagaaaagtttaaaaagatgagatcatatctgctagtta
tcagatctttgagatactctctaaaagaaagagtccttactttcattatc
aagtatactgccatatttagcagcagaaataaggacacaggtggttccta
tctctggccccatctctaagaatatggatgtctgattttgaccaattgaa
ctgcattaagagacagatgtttctgaaaatgcagaatcgcgattcaatat
taagagtaactcacacaaaatgtattcactgtagacataaatgtcagcat
ccttagtatatgaggtgccccacagatcttaacacaatttttaagcttta
ggatcctttgagacttcacaaattcaaccaaaaacattacttgaaagtta
attaactgcctttgcaaggcttgtgtatgcatttgtatgtggagtgcatt
catgtgtgtgcacatgaatattcatgttcttcactgctcatgtagagacc
agaggccggaggatgttggctgggctgctttagcactgtcttatccctag
agtttccagttcctggctatgctggctaatcagtaagcaacagttaaagc
atctgtttcttccctctcccagcactgagtataaggcctgtgtggcacac
ctggcttttatgtaggtgctgcggatgtactgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_50717075_50718191
seq2: B6Ng01-066N04.b_46_1149 (reverse)

seq1  AGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCT  50
      |||| | |||||| |||||||||||||||||||| ||||| ||||||| |
seq2  AGGT-CAGAGTTC-AATCCCAGCAACCACATGGT-GCTCA-AACCATCGT  46

seq1  TAACAAAACCTGATGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGT  100
      | |||||| |||||| |||||| ||||| ||| |||||||||||||||||
seq2  T-ACAAAA-CTGATG-CCTCTT-TGGAGGGTC-GAAGACAGCTACAGTGT  91

seq1  ACTTACATATAATAAATAAATAAATCTTTTTTAAAAAAAGATATTTTCCC  150
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  ACTTACATATAATAAATAAATAAATCTTTTT--AAAAAAGATATTTTCCC  139

seq1  AGACTTGCACAGGGCATTAGGGACAGAAATATATTGTCTACTCATATCCT  200
      ||||||||||||||||||| ||||||||||||| ||||||||||||||||
seq2  AGACTTGCACAGGGCATTA-GGACAGAAATATA-TGTCTACTCATATCCT  187

seq1  TTATAGTATTTATTTCCTCAGCATCTCAATTAGAAGGCCCTACCCCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTATTTATTTCCTCAGCATCTCAATTAGAAGGCCCTACCCCTGCC  237

seq1  TTCTGCTTCCCTTCCGTTGCCTCTGAGTCAATCTGGGCCAGCAGTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTCCCTTCCGTTGCCTCTGAGTCAATCTGGGCCAGCAGTGTTTA  287

seq1  TAAACCATGAGGCTCCAACATGCCCCTGACCATAAAGGCAGGCAGTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATGAGGCTCCAACATGCCCCTGACCATAAAGGCAGGCAGTCCTG  337

seq1  CTGTGAAAAGATGTGGGAAAGTGCCTAGTCTTTGACCCTCTCCCTGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAAAGATGTGGGAAAGTGCCTAGTCTTTGACCCTCTCCCTGAAAG  387

seq1  TACAGAACATTCATTCCTAATTAAAATTAGAAAGAAAACCTTATGTGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAACATTCATTCCTAATTAAAATTAGAAAGAAAACCTTATGTGTAC  437

seq1  ACACCACCTTGTGACTGATTTAAAACTGCTCTCCCACAGGATGCAATGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACCTTGTGACTGATTTAAAACTGCTCTCCCACAGGATGCAATGTA  487

seq1  AACACTGGGTGTTTTATCCTGCTTGTCTGAGGCAGGGGTTTGCTATCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGGTGTTTTATCCTGCTTGTCTGAGGCAGGGGTTTGCTATCTAG  537

seq1  CCCATGCTAGGTTCAAACTACAGGTCTTCCTGCTCCTGCCTTCTGAATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGCTAGGTTCAAACTACAGGTCTTCCTGCTCCTGCCTTCTGAATGC  587

seq1  AGGGATCACTGGTGGATGCCACCAGATCTGCTGTTGGTCCAAAGAAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCACTGGTGGATGCCACCAGATCTGCTGTTGGTCCAAAGAAGCTC  637

seq1  CTTGCCCACAGTTGGGATCATTTGCTGTTTTCCTCACTTTGCATTGAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCACAGTTGGGATCATTTGCTGTTTTCCTCACTTTGCATTGAACA  687

seq1  GAGAAAGGATAAGACAAGACTCTGGAATGAGCAGGGGAGTTTCTATAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGATAAGACAAGACTCTGGAATGAGCAGGGGAGTTTCTATAGAC  737

seq1  TTCAACACTATAGATTTAGAACACCGGGACTATCATTTAGCAAGCAAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACACTATAGATTTAGAACACCGGGACTATCATTTAGCAAGCAAGGA  787

seq1  AACTATATTGAAGTGTATTCTCCCCGTCCCCTTTTAGGAAAATGGAGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATATTGAAGTGTATTCTCCCCGTCCCCTTTTAGGAAAATGGAGCCC  837

seq1  CCATGGGAATTACTAACCCATCTGCGTAGCCACAGAGGACCAGCTACTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGGAATTACTAACCCATCTGCGTAGCCACAGAGGACCAGCTACTTA  887

seq1  AACTCCGCACTTTTCTCTGGCGTTAGATACTGATTCTGTTTCTCAGCCCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCGCACTTTTCTCTGGCGTTAGATACTGATTCTGTTTCTCAGCCCC  937

seq1  TCCTTTACTTTTATCTCAGTACAGGAGCTATCTTAGTCCTCCACCACCGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTACTTTTATCTCAGTACAGGAGCTATCTTAGTCCTCCACCACCGG  987

seq1  GTACTAAAAACCAAGAAAATGCAAATTAGGTAAGAGTAATAAATTTTACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAAAACCAAGAAAATGCAAATTAGGTAAGAGTAATAAATTTTACT  1037

seq1  GCTTTAGACTCTAGTATAAAAGCCCTTTCTCCTTCATGTTGAAAACCTAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGACTCTAGTATAAAAGCCCTTTCTCCTTCATGTTGAAAACCTAG  1087

seq1  CAACAAAGTATGAATTC  1117
      |||||||||||||||||
seq2  CAACAAAGTATGAATTC  1104

seq1: chrX_50603278_50604313
seq2: B6Ng01-066N04.g_66_1100

seq1  GAATTCTTAATATAAAAAAAAAAATCAATCAAAGTACCATACAAGGCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATATAAAAAAAAAAATCAATCAAAGTACCATACAAGGCATA  50

seq1  CTTCTAAATTATGCTCAAACTCTTGATGTTCACAAATACTAAATATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAAATTATGCTCAAACTCTTGATGTTCACAAATACTAAATATAAAA  100

seq1  AGGCATAATTCCAGCTTTGTAGTTAGCAATGTTCCCTTCATTCTGTTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAATTCCAGCTTTGTAGTTAGCAATGTTCCCTTCATTCTGTTGAC  150

seq1  AGTGACTTCAAGATTTTGTAATTTTAGGGGGAAAAAAAGGAAATAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTCAAGATTTTGTAATTTTAGGGGGAAAAAAAGGAAATAAAAAG  200

seq1  TATGCCCAAATGGACACAAAGCCTAAATGGATTTACATTCAAAGTTCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCAAATGGACACAAAGCCTAAATGGATTTACATTCAAAGTTCTAA  250

seq1  TTTAATTTATACTTCAAAGACGTCAGTTTTAAAGATTATTAAGTAGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTATACTTCAAAGACGTCAGTTTTAAAGATTATTAAGTAGCACA  300

seq1  TAAACTTTAAAGACTATAAAATGCATCTTTTCCTTCTCTTTGTGGTATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTAAAGACTATAAAATGCATCTTTTCCTTCTCTTTGTGGTATGG  350

seq1  GACAGGGAATAAAGAAAAGTTTAAAAAGATGAGATCATATCTGCTAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGAATAAAGAAAAGTTTAAAAAGATGAGATCATATCTGCTAGTTA  400

seq1  TCAGATCTTTGAGATACTCTCTAAAAGAAAGAGTCCTTACTTTCATTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTTTGAGATACTCTCTAAAAGAAAGAGTCCTTACTTTCATTATC  450

seq1  AAGTATACTGCCATATTTAGCAGCAGAAATAAGGACACAGGTGGTTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATACTGCCATATTTAGCAGCAGAAATAAGGACACAGGTGGTTCCTA  500

seq1  TCTCTGGCCCCATCTCTAAGAATATGGATGTCTGATTTTGACCAATTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCCCCATCTCTAAGAATATGGATGTCTGATTTTGACCAATTGAA  550

seq1  CTGCATTAAGAGACAGATGTTTCTGAAAATGCAGAATCGCGATTCAATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTAAGAGACAGATGTTTCTGAAAATGCAGAATCGCGATTCAATAT  600

seq1  TAAGAGTAACTCACACAAAATGTATTCACTGTAGACATAAATGTCAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTAACTCACACAAAATGTATTCACTGTAGACATAAATGTCAGCAT  650

seq1  CCTTAGTATATGAGGTGCCCCACAGATCTTAACACAA-TTTTAAGCTTTA  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTTAGTATATGAGGTGCCCCACAGATCTTAACACAATTTTTAAGCTTTA  700

seq1  GGATCCTTTGAGACTTCACAAATTCAACCAAAAACATTACTTGAAAGTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTTTGAGACTTCACAAATTCAACCAAAAACATTACTTGAAAGTTA  750

seq1  ATTAACTGCCTTTGCAAGGCTTGTGTATGCATTTGTATGTGGAGTGCATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTGCCTTTGCAAGGCTTGTGTATGCATTTGTATGTGGAGTGCATT  800

seq1  CATGTGTGTGCACATGAATATTCATGTTCATCACTGCTCATGTAGAGACC  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATGTGTGTGCACATGAATATTCATGTTCTTCACTGCTCATGTAGAGACC  850

seq1  AGAGGCCGGAGGATGTTGGCTGGGCTGCTTTAGCACTGTCTTATCCCTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCGGAGGATGTTGGCTGGGCTGCTTTAGCACTGTCTTATCCCTAG  900

seq1  AGTTTCCAGTTTCCTGGCTATGCTGGCTAATCAGTAAGCACCAG-TAAAG  948
      ||||||||| |||||||||||||||||||||||||||||| ||| |||||
seq2  AGTTTCCAG-TTCCTGGCTATGCTGGCTAATCAGTAAGCAACAGTTAAAG  949

seq1  CATCTGTTTCTCCCCTCTCCCAGCACTGGAGTTATAGGCCTGTGTGGCCA  998
      ||||||||||| ||||||||||||||| ||||   |||||||||||| ||
seq2  CATCTGTTTCTTCCCTCTCCCAGCACT-GAGTATAAGGCCTGTGTGG-CA  997

seq1  CACCTGGCTTTTATGTAGGTGCTGCGGATGTACTGTGT  1036
      ||||||||||||||||||||||||||||||||||| ||
seq2  CACCTGGCTTTTATGTAGGTGCTGCGGATGTACTGAGT  1035