BAC Information

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BAC

Clone NameB6Ng01-068P12
ChromosomeX (Build37)
Map Location 139,077,631 - 139,235,471
singlet/doubletdoublet
Overlap geneTmem164
Upstream geneCol4a5, Irs4, LOC633596, EG666488, LOC622901, EG436234, EG622956, Gucy2f, LOC623006, LOC100039023, Nxt2, EG434858, Kcne1l, Acsl4, Ppia-psx_1100.1, EG633736, EG245651, LOC100039086, EG436235
Downstream geneAmmecr1, Rgag1, LOC209541, Chrdl1, Pak3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068P12.bB6Ng01-068P12.g
ACCDH887411DH887412
length1,1091,100
definitionDH887411|Mus musculus domesticus DNA, BAC clone: B6Ng01-068P12, 5' end.DH887412|Mus musculus domesticus DNA, BAC clone: B6Ng01-068P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,234,336 - 139,235,471)(139,077,631 - 139,078,511)
sequence
gaattcttttaaacttgagtgacatatatcaacatgaaccaatattgcaa
aactgtgtgatgggggggatgaaaaagataaaattggtttaggagaataa
tttgtcaactgttattaaaaaaaaaaaaacttggggctggtgagatggct
cagtgggtaagagcacccgactgctcttccgaaggtctggagttcaaatc
ccagcaaccacatggtggctcacaaccatccataacaagatctgactccc
tcttctggagtgtctgaagacagctacagtgtacttacatataataaata
aataaatctttaaaaaaaaaaaacctttaaatggtcatctcccctctaga
aatgtatggtaacttagatctaattaccaagaattttttaaaagatttat
ttattttttattttatgtgtatgaatattctgcctgtgtggatatatgtg
cacaatgtgagtgcctggtgcctgtggagaccagaagatggcatcagtag
ttgccttgggcctagagttatggttgtgagcaccacatgggtgctgaaaa
ctgaaccccggttttctgtaagagcagtaagtgttcttaactgctgagcc
atctctctatctcccaaagaaaattttagaagcaatccaaaatacagaaa
gtaaacacacaaaaagaaagggtcgggctaactgaccaccaatgggaaat
tataggaaatacactggaagacgaactacctcacagcatgttttaaagaa
ggcattaagcatttctaggtaaaagagaacgacttcatattgtataaaat
gtgatccttcttaatagaaggcaaattgaaaagtctgtaaacatgccttt
aggtagatggttaatgcatagagaaaagactggagtacaacccattaacc
tgagcaggggaaggattgacatagtttgtaaagggaagatgagatcttga
ctttggacttcttatgattttataggtgtattgtatagtaataaaagtgc
cagtctagtagcataactaaaatattttaaagcataaagtcacagaggga
tactttttcactgtacagcactgcgtctagcagagatttctcagatattt
tttgcagtt
gaattctcagctgaggaaactcgaatggcagagaagcacctaaagaaatg
ttcaacatccttagggaaatgcaaatcaaaacagccctgagattccacct
cacaccagtcagaatgtctaagatcaaaaattcaggtgacagcagatgct
ggtgaggatgtggagaaagagggacactcctccattgctggtgggattgc
aagctggtacaagcactctggaaatcagcctggcggttcctcagaaaatt
ggacatagtactaccagcagatccagcaatacctctcctgggcatataca
cagaagatgctccaacttgtcataaggacacatgctccactatgttcata
gcagccttatttataatagccagaagctggaaagaacccagatgtccctc
aacagaggaatagatacagaaaatgtggtacatttacacaatggagtact
actcagctattaaaaacaatgaattcatgaaattcttaggcaaatggatg
catctggaggatatcatcctgagtgaggtaacccaatcacaaaagaacac
acatgatatgctctcactgataagtggatattagcccagaaacttagact
acccaaggtacaatttacaaaacacatgaaactcaagaagaaggaagagc
aaaatgtggatacttcgttccttcttagaatggggatcaatgtagaagac
agttccccatgacagagagatgtctgatccgaatatcaatagcactgtgt
cattgaatatcaattctcttataatcataggcatttaaaactgagttgtt
atttgaatcctgtttttttttttaaaggggtgtgggttgcaaatacatct
tgctcaatattccagaatttaaatgacctgtgatggggtcttgtgtgatg
gtttgaatcatttggcccaggagtggcccaggaggtgtggctctggctgg
agtagttgtacttgtggagaagtgttcatttggctgttggcttcatatct
catcctcttttgcttcaggacaactatagactctcagcttctccacatca
tgccaggctattggtggctgcagttcctgcctgtgaattgactgaacctg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_139234336_139235471
seq2: B6Ng01-068P12.b_47_1155 (reverse)

seq1  AACTGCAGAAAAATATATACTGAGAAAATTCCTTTCCTGCTAGACCGGCA  50
      ||||||| ||||||||   ||||||||      |  |||||||||  |||
seq2  AACTGCA-AAAAATAT---CTGAGAAA------TCTCTGCTAGAC--GCA  38

seq1  GTTGCTGTTAACAGTGAGAAAGTATCCCTCTGTTGAACTTTTTATGGCTT  100
      | ||||||  ||||||| |||||||||||||||   ||||| |   ||||
seq2  G-TGCTGT--ACAGTGAAAAAGTATCCCTCTGT--GACTTTAT---GCTT  80

seq1  TAAAATATTTTAGTTATGCTACTAGGACTTGGCAACTTTTTATTTACTAT  150
      |||||||||||||||||||||||| ||| |||| ||||||   |||||||
seq2  TAAAATATTTTAGTTATGCTACTA-GAC-TGGC-ACTTTT--ATTACTAT  125

seq1  ACAATACACCTATAAAATCATAAGAAGTCCAAAGTCAAGATCTCATCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACACCTATAAAATCATAAGAAGTCCAAAGTCAAGATCTCATCTTC  175

seq1  CCTTTACAAACTATTGTCAATCCTTCCCCCTGCTCAGGTTAATGGGTTGT  250
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  CCTTTACAAACTA-TGTCAATCCTT-CCCCTGCTCAGGTTAATGGGTTGT  223

seq1  ACTCCAGTCTTTTCTCTATGCATTAACCATCTACCTAAAGGCATGTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTCTTTTCTCTATGCATTAACCATCTACCTAAAGGCATGTTTAC  273

seq1  AGACTTTTCAATTTGCCTTCTATTAAGAAGGATCACATTTTATACAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTTCAATTTGCCTTCTATTAAGAAGGATCACATTTTATACAATAT  323

seq1  GAAGTCGTTCTCTTTTACCTAGAAATGCTTAATGCCTTCTTTAAAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCGTTCTCTTTTACCTAGAAATGCTTAATGCCTTCTTTAAAACATG  373

seq1  CTGTGAGGTAGTTCGTCTTCCAGTGTATTTCCTATAATTTCCCATTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGGTAGTTCGTCTTCCAGTGTATTTCCTATAATTTCCCATTGGTG  423

seq1  GTCAGTTAGCCCGACCCTTTCTTTTTGTGTGTTTACTTTCTGTATTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTAGCCCGACCCTTTCTTTTTGTGTGTTTACTTTCTGTATTTTGG  473

seq1  ATTGCTTCTAAAATTTTCTTTGGGAGATAGAGAGATGGCTCAGCAGTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTAAAATTTTCTTTGGGAGATAGAGAGATGGCTCAGCAGTTAA  523

seq1  GAACACTTACTGCTCTTACAGAAAACCGGGGTTCAGTTTTCAGCACCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACTTACTGCTCTTACAGAAAACCGGGGTTCAGTTTTCAGCACCCAT  573

seq1  GTGGTGCTCACAACCATAACTCTAGGCCCAAGGCAACTACTGATGCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTCACAACCATAACTCTAGGCCCAAGGCAACTACTGATGCCATC  623

seq1  TTCTGGTCTCCACAGGCACCAGGCACTCACATTGTGCACATATATCCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTCTCCACAGGCACCAGGCACTCACATTGTGCACATATATCCACA  673

seq1  CAGGCAGAATATTCATACACATAAAATAAAAAATAAATAAATCTTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGAATATTCATACACATAAAATAAAAAATAAATAAATCTTTTAAA  723

seq1  AAATTCTTGGTAATTAGATCTAAGTTACCATACATTTCTAGAGGGGAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTGGTAATTAGATCTAAGTTACCATACATTTCTAGAGGGGAGAT  773

seq1  GACCATTTAAAGGTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATTTAAAGGTTTTTTTTTTTTAAAGATTTATTTATTTATTATATGT  823

seq1  AAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTT  873

seq1  GTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCAG  923

seq1  ACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAG  973

seq1  CCCCAAGTTTTTTTTTTTTTAATAACAGTTGACAAATTATTCTCCTAAAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGTTTTTTTTTTTTTAATAACAGTTGACAAATTATTCTCCTAAAC  1023

seq1  CAATTTTATCTTTTTCATCCCCCCCATCACACAGTTTTGCAATATTGGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTATCTTTTTCATCCCCCCCATCACACAGTTTTGCAATATTGGTT  1073

seq1  CATGTTGATATATGTCACTCAAGTTTAAAAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  CATGTTGATATATGTCACTCAAGTTTAAAAGAATTC  1109

seq1: chrX_139077631_139078511
seq2: B6Ng01-068P12.g_320_1169

seq1  GGACATAGTACTACCAGCAGATCCAGCAATACCTCTCCTGGGCATATACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATAGTACTACCAGCAGATCCAGCAATACCTCTCCTGGGCATATACA  50

seq1  CAGAAGATGCTCCAACTTGTCATAAGGACACATGCTCCACTATGTTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATGCTCCAACTTGTCATAAGGACACATGCTCCACTATGTTCATA  100

seq1  GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTC  150

seq1  AACAGAGGAATAGATACAGAAAATGTGGTACATTTACACAATGGAGTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGAATAGATACAGAAAATGTGGTACATTTACACAATGGAGTACT  200

seq1  ACTCAGCTATTAAAAACAATGAATTCATGAAATTCTTAGGCAAATGGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCTATTAAAAACAATGAATTCATGAAATTCTTAGGCAAATGGATG  250

seq1  CATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGGAGGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACAC  300

seq1  ACATGATATGCTCTCACTGATAAGTGGATATTAGCCCAGAAACTTAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATATGCTCTCACTGATAAGTGGATATTAGCCCAGAAACTTAGACT  350

seq1  ACCCAAGGTACAATTTACAAAACACATGAAACTCAAGAAGAAGGAAGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGGTACAATTTACAAAACACATGAAACTCAAGAAGAAGGAAGAGC  400

seq1  AAAATGTGGATACTTCGTTCCTTCTTAGAATGGGGATCAATGTAGAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTGGATACTTCGTTCCTTCTTAGAATGGGGATCAATGTAGAAGAC  450

seq1  AGTTCCCCATGACAGAGAGATGTCTGATCCGAATATCAATAGCACTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCCATGACAGAGAGATGTCTGATCCGAATATCAATAGCACTGTGT  500

seq1  CATTGAATATCAATTCTCTTATAATCATAGGCATTTAAAACTGAGTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAATATCAATTCTCTTATAATCATAGGCATTTAAAACTGAGTTGTT  550

seq1  ATTTGAATCCTGTTTTTTTTTTTTAAAAGGGGTGTGGGTTGCAAATACAT  600
      |||||||||||||||||||||||  |||||||||||||||||||||||||
seq2  ATTTGAATCCTGTTTTTTTTTTT--AAAGGGGTGTGGGTTGCAAATACAT  598

seq1  C-TGCTCAAATATTCCAGAATTTAAATGACCTGTGATGGGGTCTGGTGTG  649
      | ||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  CTTGCTC-AATATTCCAGAATTTAAATGACCTGTGATGGGGTCTTGTGTG  647

seq1  ATGGTTTGAATCATTTGGCCCAGGAAGTGGCCCAGGAGGTGTGGC-CTTG  698
      |||||||||||||||||||||||| |||||||||||||||||||| || |
seq2  ATGGTTTGAATCATTTGGCCCAGG-AGTGGCCCAGGAGGTGTGGCTCTGG  696

seq1  CTGGAGTAGGTGTTACTTGTTGGAGGAAGTGTGTCATTTTGGCTGTGGGC  748
      ||||||||| || |||||| |||| ||||||| ||| ||||||||| |||
seq2  CTGGAGTAGTTG-TACTTG-TGGA-GAAGTGT-TCA-TTTGGCTGTTGGC  741

seq1  TTCAATACCCTCATCCTCTTTTGCCTTCAGGACAACATATAGAACTCTCA  798
      ||| |||  |||||||||||||| |||||||||||| ||||| |||||||
seq2  TTC-ATA-TCTCATCCTCTTTTG-CTTCAGGACAAC-TATAG-ACTCTCA  786

seq1  GCTTCTCCCACCATCATGCCATGCCTATCTGTGTGCTGCCATGTTTCCTG  848
      ||||||||   |||||||||| | ||||  ||| |||||     ||||||
seq2  GCTTCTCC--ACATCATGCCA-GGCTATTGGTG-GCTGC---AGTTCCTG  829

seq1  CCTTGATGATATTGGACTGAACCTCTGAACCTG  881
      |||         || | |||    |||||||||
seq2  CCT--------GTGAATTGA----CTGAACCTG  850