BAC Information

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BAC

Clone NameB6Ng01-069C17
ChromosomeX (Build37)
Map Location 52,755,253 - 52,756,450
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666096, LOC100040867, LOC100040894, LOC666122, LOC666135, LOC100038960, EG666151, EG666161, EG666199, 4930527E24Rik, LOC626274, LOC625210
Downstream geneLOC100039055, LOC100039066, LOC676623, EG626315, LOC666268, LOC666097, LOC666107, LOC626348, LOC100039146, LOC100039160, EG630825, LOC100039187, LOC673263, 3830403N18Rik, LOC626439, Gm773, LOC100039254, LOC100039266, LOC100039276, 1600025M17Rik, Zfp449, LOC100039317, 6330419J24Rik, 6530403M18Rik, LOC100039346, Ddx26b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069C17.bB6Ng01-069C17.g
ACCDH887554DH887555
length1,1751,197
definitionDH887554|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C17, 5' end.DH887555|Mus musculus domesticus DNA, BAC clone: B6Ng01-069C17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaggcccatacctaaacataataaaggcaagagacagcaaaaaa
agagccagcatcaaactaaatggtgagaaacttgaagcaatttccactaa
aaccagggactagacaaggctgaccactttctccctacctattcaatata
gtacttgaagtcctagccaaagtagttagaaaacaaaaggagaacaaatg
aatacaaattgaaaagaaagaagtaaaaaatcactatttgcagattatat
atacatatgatctgtccatatgtctgacaattcctctttgtttttgttat
gtggtttgaatggctattgttctgtgtttcatgttgaaaaatataaatgg
taaaatcttgttttaaaagtagtttcaatttgcacaagtacaagctgata
aattagctgcactgttgctgggagccaagtacagatgaataggccttgct
gagagctgattacaaacagagctcttaaagggggcaggcagcctttcact
tgtaacagaaagttagcttaaaattgggaactcaaggttagaatctttct
aaacaacatgaacaaacacaagaaaacaggtctttaaggatacttcaaca
tagtgataatctttgagtcaagactctggcagagtgtttagattgaaaaa
aaaaagtttgcatttgggttaatctcacacgaacaggactggccaggaag
aacgacgctgcatcaggatccttctgcacaggtttattgggagagccttg
attgcataggcgaaagtagaacaacggcgaacaaggaaaatgatgctgct
tatatacccctccatgtgacgtgtcagctcatgattagctgctcactcat
catcccactactacgccctgggatgggcagtgacttggcacgaatttact
cttgcatatgcgcacattacttgtttaacagttaggcacagcggagctcg
tgatggcaattgttcatggctctccacaggttaaggtgagcttggaggga
acagcctcagctcgacttgtgcagacttctagagccttattacagaccta
gcagatgttgttctaataaatttaaatttaaaagtttataaagtcatcag
gtataaaccttataaggcattccaaatacttgcttacttctataaaacat
tatagattaaagttatttttccatt
gaattccttgttccaaacagcaattggttattgcagaatattgatatttg
acctattacataccatcattttaaataaaattgatactcatcctaaaaat
aagttaaaaattgcttatatgcatgcttttgtttgtttcttctataaatt
catgcatgcatcacatttactgtatttaataacaacccatctatgggaaa
aaggtatttgtgaattagatcacatgtttattcttttgagtttccaccta
cttcagcacagataatttatgtgctgtagatggtgttttaaaatgttaaa
gattgcctaaaaaggacctcttaagacaatgccaagctagatttatatcc
caggtagattataaatcttataaaaaaataattggccatataatctcatt
atttacatcatcaaaatagtaatggcttgagatagtaatttggtatttta
aataaatatgtaaataaataaataaatgtgcatgtctttgtaaagatttg
ctctcagtgtcctcagtttctacctgttccacacattggtgttgattctc
aaggacctatagttaatcaattattacaaatggatactcatttttgattt
aaaaaaataaaacatgcacatgtgactattgatacctttatagtctttct
aaaaagtatagttaggcattgcctgtgttgatgctttttgcttggtgttc
caaatcaacttaaaactggctattacagccaaaaatttgagatgttttgt
caacaatttaatgttacccatcttactagatttttataattctcaaaaaa
aagtactgtggaactttaaatctatatctttaaaaaaattaaattagatg
ccaaaatctcgctgagtgtatatggcaccctacaatcagcatactcatga
gatgaagggatccatttattggcacatggcatgatcccgttcagatactt
atattggggaagggggaagtgtttctggttttttcacagaatgctgcaga
gcatgctagctacaatgtgacagttgactcggaatagaactgacagtgcc
tggagagggtacaagaatgcttatgagcttcagagagaaatctgaagtca
cacagcaataggaaacttctatctccccagggctcaacaggagcgacttg
ctcacttgggacactcgaaagctgacatcgagttgtagagcagtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_52755253_52756450
seq2: B6Ng01-069C17.b_47_1221

seq1  GAATTCAAGGCCCATACCTAAACATAATAAAGGCAAGAGACAGCAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCCATACCTAAACATAATAAAGGCAAGAGACAGCAAAAAA  50

seq1  AGAGCCAGCATCAAACTAAATGGTGAGAAACTTGAAGCAATTTCCACTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGCATCAAACTAAATGGTGAGAAACTTGAAGCAATTTCCACTAA  100

seq1  AACCAGGGACTAGACAAGGCTGACCACTTTCTCCCTACCTATTCAATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGACTAGACAAGGCTGACCACTTTCTCCCTACCTATTCAATATA  150

seq1  GTACTTGAAGTCCTAGCCAAAGTAGTTAGAAAACAAAAGGAGAACAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGAAGTCCTAGCCAAAGTAGTTAGAAAACAAAAGGAGAACAAATG  200

seq1  AATACAAATTGAAAAGAAAGAAGTAAAAAATCACTATTTGCAGATTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAATTGAAAAGAAAGAAGTAAAAAATCACTATTTGCAGATTATAT  250

seq1  ATACATATGATCTGTCCATATGTCTGACAATTCCTCTTTGTTTTTGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATGATCTGTCCATATGTCTGACAATTCCTCTTTGTTTTTGTTAT  300

seq1  GTGGTTTGAATGGCTATTGTTCTGTGTTTCATGTTGAAAAATATAAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTGAATGGCTATTGTTCTGTGTTTCATGTTGAAAAATATAAATGG  350

seq1  TAAAATCTTGTTTTAAAAGTAGTTTCAATTTGCACAAGTACAAGCTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTTGTTTTAAAAGTAGTTTCAATTTGCACAAGTACAAGCTGATA  400

seq1  AATTAGCTGCACTGTTGCTGGGAGCCAAGTACAGATGAATAGGCCTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGCTGCACTGTTGCTGGGAGCCAAGTACAGATGAATAGGCCTTGCT  450

seq1  GAGAGCTGATTACAAACAGAGCTCTTAAAGGGGGCAGGCAGCCTTTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTGATTACAAACAGAGCTCTTAAAGGGGGCAGGCAGCCTTTCACT  500

seq1  TGTAACAGAAAGTTAGCTTAAAATTGGGAACTCAAGGTTAGAATCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGAAAGTTAGCTTAAAATTGGGAACTCAAGGTTAGAATCTTTCT  550

seq1  AAACAACATGAACAAACACAAGAAAACAGGTCTTTAAGGATACTTCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACATGAACAAACACAAGAAAACAGGTCTTTAAGGATACTTCAACA  600

seq1  TAGTGATAATCTTTGAGTCAAGACTCTGGCAGAGTGTTTAGATTGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATAATCTTTGAGTCAAGACTCTGGCAGAGTGTTTAGATTGAAAAA  650

seq1  AAAAAGTTTGCATTTGGGTTAATCTCACACGAACAGGACTGGCCAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTTGCATTTGGGTTAATCTCACACGAACAGGACTGGCCAGGAAG  700

seq1  AACGACGCTGCATCAGGATCCTTCTGCACAGGTTTATTGGGAGAGCCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACGCTGCATCAGGATCCTTCTGCACAGGTTTATTGGGAGAGCCTTG  750

seq1  ATTGCATAGGCGAAAGTAGAACAACGGCGAACAAGGAAAATGATGCTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATAGGCGAAAGTAGAACAACGGCGAACAAGGAAAATGATGCTGCT  800

seq1  TATATACCCCTCCATGTGACGTGTCAGCTCATGATTAGCTGCTCACTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACCCCTCCATGTGACGTGTCAGCTCATGATTAGCTGCTCACTCAT  850

seq1  CATCCCACTACTACGCCCTGGGATGGGCAGTGACTTGGCACGAATTTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCACTACTACGCCCTGGGATGGGCAGTGACTTGGCACGAATTTACT  900

seq1  CTTGCATATGCGCACATTACTTGTTTAACAGTTAGGCACAGCGGAGCTCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATATGCGCACATTACTTGTTTAACAGTTAGGCACAGCGGAGCTCG  950

seq1  TGATGGCAATTGTTCATGGCTCTCCACAGGTTAAGGCTGAGCTTGGAGGG  1000
      |||||||||||||||||||||||||||||||||||| |||||||||| ||
seq2  TGATGGCAATTGTTCATGGCTCTCCACAGGTTAAGG-TGAGCTTGGA-GG  998

seq1  GAACAGCCTCAGCTCGACTTGTGCAGAACTTCTTAGAGCCTTATTACAGA  1050
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  GAACAGCCTCAGCTCGACTTGTGCAG-ACTTC-TAGAGCCTTATTACAGA  1046

seq1  CCTAGCCAGATGTTGTTCTAAATAAAATTTAAATTTAAAAAGTTTATAAA  1100
      ||||| |||||||||||||||   |||||||||||| |||||||||||||
seq2  CCTAG-CAGATGTTGTTCTAA--TAAATTTAAATTT-AAAAGTTTATAAA  1092

seq1  AGGTCAATCAGGTTATAAAACTTATAAAGGCATTTCAAAATAACTTGCTT  1150
        ||| |||||| |||||| ||||| |||||||| ||||   ||||||||
seq2  --GTC-ATCAGG-TATAAACCTTAT-AAGGCATTCCAAA--TACTTGCTT  1135

seq1  ACTTCATATAAAACTATTATAGATTTAAAAGTTTATTTTTTTCCCATT  1198
      ||||| |||||||| ||||||||||  |||| ||||||||   |||||
seq2  ACTTC-TATAAAAC-ATTATAGATT--AAAG-TTATTTTT---CCATT  1175