BAC Information

Click to search

BAC

Clone NameB6Ng01-069E18
ChromosomeX (Build37)
Map Location 11,451,481 - 11,575,838
singlet/doubletdoublet
Overlap geneLOC100043945
Upstream genePpia-psx_105.1, LOC100042922, LOC100042927, LOC100042929, LOC100042931, OTTMUSG00000016790, LOC100042939, LOC100042943, LOC100042944, LOC100042946, EG236663, 8430439B09Rik, LOC669520, Rpl23a-ps
Downstream geneBcor, 2900008C10Rik, LOC385323, LOC100043946, LOC628441, Atp6ap2, LOC668986, EG245347, 1810030O07Rik, Crsp2, LOC668987, LOC245350, Ppia-psx_132.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069E18.bB6Ng01-069E18.g
ACCDH887648DH887649
length7561,148
definitionDH887648|Mus musculus domesticus DNA, BAC clone: B6Ng01-069E18, 5' end.DH887649|Mus musculus domesticus DNA, BAC clone: B6Ng01-069E18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,575,083 - 11,575,838)(11,451,481 - 11,452,639)
sequence
gaattcctggccctgggcccccgccagaggtggagaaaggggccccataa
ccagccagagtttgtaactctgtgtggtttctggttttttactgctcgtt
tgaaattgttccataggaaaatgtctgccaaggaggcctgaaaggcctgg
agccccgctccaccacccgggtgccaatgtgccagcagtgagtgtgcacg
agtggactcgcgcctgcgggccccgggagggttggagggaacattttacc
ctgcagcagcgctgtgagcacgacatgcaaccttgaacctggtacccacg
ggtcccctgtgctgcggccttggcccagactagcaccccagtgcgcctct
catgccttccttctgcccccaaggcaggcactgttaacccaggcaggtga
cagcgctctggcgcccatcgtgccgtggtctttatacctcgtgagttcaa
cactaatgagttatgggttggcccacgaaaacataatgtgtaaattagga
atttaatgatgtgtaagattaaaagctgcgcagggttgcatttatttaag
gctgccatcttgtgttcgcagagaaattacttgaacgacattgacctcct
tcgcccatgtgattgggattggtgtgagggctgggtggggtctgggaggg
tcccatgtgttgggacttgagtcctcttgggctcattcagggtcagggtg
tgctctggggaggcagagggctcattatgtgtgaaccccttggtgggaac
cctgcc
gaattcaatggcagtggcctctggcagatgtgtaagttctctgccagcca
cagagagtgtgttccaagctgtttaaccctgagatgagagataaagccgc
tcaccagggatggctagggatcagatatccagaaaggagctaagaggcta
aaccctgctctctgaagccatcaggaagtaggacagcagctgggctgaat
tcaaccggagccaggactgagcagatgccggggagaagccatgtttaaga
gaaagtatgaggtcaaagtcagccaaggtaagaggtatgctattctgggc
tactgggtctttgtcccaaacctagaaactccagcaaattaagaaggcac
tatggattgtagaaggtagtcaaagattgatgggaagacccaaggaagac
tgaggactgacatgaggtaagatgtcaagagacggtgggtggagagaagc
agaatggaagaagaaaggcttttaaaatgtctttacatttccccctcagc
ctgccgcctttagcctgccccttctttggtttctaccaaagaacctacat
gggtaccatccaggtgccatcaggcaccctgagccctgccagcatccttg
ctgactaaaagaggtactaggcaaagcaatggctttcaggcctctacccc
tccatcccctccaggacacagggccagaacctagtaaggctgcttcttcc
gctgatacagatgaaggaaggttaaaggtgctcctctgctgatgctccgt
gctgatgctcgatggctgatgtggccattgggtggagtaattaatataca
ctttattcatcgtccagggctcttctaaaattctgagactgacgcctacc
attgcatgggcttttggagcctcccctccaatccacacaaccaggagacc
agccttgccccaccatacatgacccgcagatgccagcagtgggctttcct
acaaaggatcatccatcacagacgaaagctcacagagacttcaatcgccc
agagtcagaacacaatagttgagaaggacccacactgaaagcaacttaaa
ctagaatataagaagctggcaccgactcgtggcagggagtccttgccacc
aagcctgacacgtggctgattccagacccactgatgaaagagaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_11575083_11575838
seq2: B6Ng01-069E18.b_45_800 (reverse)

seq1  GGCAGGCTTCCAACCAAGGGGTTCACACAAAGTGAGCCCTCTGCCTCCCC  50
      |||||| |||| ||||||||||||||||| | ||||||||||||||||||
seq2  GGCAGGGTTCCCACCAAGGGGTTCACACATAATGAGCCCTCTGCCTCCCC  50

seq1  AGAGCACAACCTGGCCCTGCAAGAGCCCAAGAGGACTCAAGTCCCAACAC  100
      |||||||| |||| ||||| | ||||||||||||||||||||||||||||
seq2  AGAGCACACCCTGACCCTGAATGAGCCCAAGAGGACTCAAGTCCCAACAC  100

seq1  ATGGGACCCTCCCAGACCCCACCCAGCCCTCACACCAATCCCAATCACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGACCCTCCCAGACCCCACCCAGCCCTCACACCAATCCCAATCACAT  150

seq1  GGGCGAAGGAGGTCAATGTCGTTCAAGTAATTTCTCTGCGAACACAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAAGGAGGTCAATGTCGTTCAAGTAATTTCTCTGCGAACACAAGAT  200

seq1  GGCAGCCTTAAATAAATGCAACCCTGCGCAGCTTTTAATCTTACACATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCTTAAATAAATGCAACCCTGCGCAGCTTTTAATCTTACACATCA  250

seq1  TTAAATTCCTAATTTACACATTATGTTTTCGTGGGCCAACCCATAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTCCTAATTTACACATTATGTTTTCGTGGGCCAACCCATAACTCA  300

seq1  TTAGTGTTGAACTCACGAGGTATAAAGACCACGGCACGATGGGCGCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTTGAACTCACGAGGTATAAAGACCACGGCACGATGGGCGCCAGA  350

seq1  GCGCTGTCACCTGCCTGGGTTAACAGTGCCTGCCTTGGGGGCAGAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGTCACCTGCCTGGGTTAACAGTGCCTGCCTTGGGGGCAGAAGGAA  400

seq1  GGCATGAGAGGCGCACTGGGGTGCTAGTCTGGGCCAAGGCCGCAGCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAGAGGCGCACTGGGGTGCTAGTCTGGGCCAAGGCCGCAGCACAG  450

seq1  GGGACCCGTGGGTACCAGGTTCAAGGTTGCATGTCGTGCTCACAGCGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCGTGGGTACCAGGTTCAAGGTTGCATGTCGTGCTCACAGCGCTG  500

seq1  CTGCAGGGTAAAATGTTCCCTCCAACCCTCCCGGGGCCCGCAGGCGCGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGGTAAAATGTTCCCTCCAACCCTCCCGGGGCCCGCAGGCGCGAG  550

seq1  TCCACTCGTGCACACTCACTGCTGGCACATTGGCACCCGGGTGGTGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCGTGCACACTCACTGCTGGCACATTGGCACCCGGGTGGTGGAGC  600

seq1  GGGGCTCCAGGCCTTTCAGGCCTCCTTGGCAGACATTTTCCTATGGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCAGGCCTTTCAGGCCTCCTTGGCAGACATTTTCCTATGGAACA  650

seq1  ATTTCAAACGAGCAGTAAAAAACCAGAAACCACACAGAGTTACAAACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAACGAGCAGTAAAAAACCAGAAACCACACAGAGTTACAAACTCT  700

seq1  GGCTGGTTATGGGGCCCCTTTCTCCACCTCTGGCGGGGGCCCAGGGCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTTATGGGGCCCCTTTCTCCACCTCTGGCGGGGGCCCAGGGCCAG  750

seq1  GAATTC  756
      ||||||
seq2  GAATTC  756

seq1: chrX_11451481_11452639
seq2: B6Ng01-069E18.g_70_1217

seq1  GAATTCAATGGCAGTGGCCTCTGGCAGATGTGTAAGTTCTCTGCCAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGCAGTGGCCTCTGGCAGATGTGTAAGTTCTCTGCCAGCCA  50

seq1  CAGAGAGTGTGTTCCAAGCTGTTTAACCCTGAGATGAGAGATAAAGCCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTGTGTTCCAAGCTGTTTAACCCTGAGATGAGAGATAAAGCCGC  100

seq1  TCACCAGGGATGGCTAGGGATCAGATATCCAGAAAGGAGCTAAGAGGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGGGATGGCTAGGGATCAGATATCCAGAAAGGAGCTAAGAGGCTA  150

seq1  AACCCTGCTCTCTGAAGCCATCAGGAAGTAGGACAGCAGCTGGGCTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGCTCTCTGAAGCCATCAGGAAGTAGGACAGCAGCTGGGCTGAAT  200

seq1  TCAACCGGAGCCAGGACTGAGCAGATGCCGGGGAGAAGCCATGTTTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCGGAGCCAGGACTGAGCAGATGCCGGGGAGAAGCCATGTTTAAGA  250

seq1  GAAAGTATGAGGTCAAAGTCAGCCAAGGTAAGAGGTATGCTATTCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATGAGGTCAAAGTCAGCCAAGGTAAGAGGTATGCTATTCTGGGC  300

seq1  TACTGGGTCTTTGTCCCAAACCTAGAAACTCCAGCAAATTAAGAAGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGTCTTTGTCCCAAACCTAGAAACTCCAGCAAATTAAGAAGGCAC  350

seq1  TATGGATTGTAGAAGGTAGTCAAAGATTGATGGGAAGACCCAAGGAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTGTAGAAGGTAGTCAAAGATTGATGGGAAGACCCAAGGAAGAC  400

seq1  TGAGGACTGACATGAGGTAAGATGTCAAGAGACGGTGGGTGGAGAGAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTGACATGAGGTAAGATGTCAAGAGACGGTGGGTGGAGAGAAGC  450

seq1  AGAATGGAAGAAGAAAGGCTTTTAAAATGTCTTTACATTTCCCCCTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAAGAAGAAAGGCTTTTAAAATGTCTTTACATTTCCCCCTCAGC  500

seq1  CTGCCGCCTTTAGCCTGCCCCTTCTTTGGTTTCTACCAAAGAACCTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGCCTTTAGCCTGCCCCTTCTTTGGTTTCTACCAAAGAACCTACAT  550

seq1  GGGTACCATCCAGGTGCCATCAGGCACCCTGAGCCCTGCCAGCATCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCATCCAGGTGCCATCAGGCACCCTGAGCCCTGCCAGCATCCTTG  600

seq1  CTGACTAAAAGAGGTACTAGGCAAAGCAATGGCTTTCAGGCCTCTACCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTAAAAGAGGTACTAGGCAAAGCAATGGCTTTCAGGCCTCTACCCC  650

seq1  TCCATCCCCTCCAGGACACAGGGCCAGAACCTAGTAAGGCTGCTTCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCCTCCAGGACACAGGGCCAGAACCTAGTAAGGCTGCTTCTTCC  700

seq1  GCTGATACAGATGAAGGAAGGTTAAAGGTGCTCCTCTGCTGATGCTCCGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATACAGATGAAGGAAGGTTAAAGGTGCTCCTCTGCTGATGCTCCGT  750

seq1  GCTGATGCTCGATGGCTGATGTGGCCATTGGGTGGAGTAATTAATATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGCTCGATGGCTGATGTGGCCATTGGGTGGAGTAATTAATATACA  800

seq1  C-TTATTCATCGTCCAGGGCTCTTCTTAAACTCTGAGACTGACGCCTACC  849
      | |||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  CTTTATTCATCGTCCAGGGCTCTTCTAAAATTCTGAGACTGACGCCTACC  850

seq1  ATTGCAT-GGCCTTTGGAGCCTCCCCTCCAATCCACACAACCAGGAGACC  898
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATGGGCTTTTGGAGCCTCCCCTCCAATCCACACAACCAGGAGACC  900

seq1  AGCCTTGCCCCACCATACATGACCCGCAAGATGCCAGCAGTGGGC-TTCC  947
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  AGCCTTGCCCCACCATACATGACCCGC-AGATGCCAGCAGTGGGCTTTCC  949

seq1  TACAAA-GATCATCCATCACAGACGAAAGCTCACAGAGTACATCAAAACG  996
      |||||| ||||||||||||||||||||||||||||||| || || || ||
seq2  TACAAAGGATCATCCATCACAGACGAAAGCTCACAGAG-ACTTC-AATCG  997

seq1  CCCAGAAGCAGAACACAATAGTTGAGAAGGACCCACACTGAAAAGCAACT  1046
      ||||||  |||||||||||||||||||||||||||||||| |||||||||
seq2  CCCAGAGTCAGAACACAATAGTTGAGAAGGACCCACACTG-AAAGCAACT  1046

seq1  TTAAAACTAGGATATAAG-AGCTGGCAACGGACTCGGTGGGCAAGGGAGC  1095
      |  ||||||| ||||||| ||||||| || ||||| ||||   |||||| 
seq2  T--AAACTAGAATATAAGAAGCTGGC-ACCGACTC-GTGG--CAGGGAGT  1090

seq1  ACTTGCCACCAAGCCTGACAACTGTGGCTGATCCCCAGAACCCACATGAT  1145
       |||||||||||||||||||   |||||||||  |||| |||||| ||| 
seq2  CCTTGCCACCAAGCCTGACA--CGTGGCTGAT-TCCAG-ACCCAC-TGA-  1134

seq1  TGAAAGAGAGAAGA  1159
      ||||||||| ||||
seq2  TGAAAGAGAAAAGA  1148