BAC Information

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BAC

Clone NameB6Ng01-073H01
ChromosomeX (Build37)
Map Location 164,849,649 - 164,992,606
singlet/doubletdoublet
Overlap geneFrmpd4, EG637566
Upstream geneEG627311, EG667822
Downstream geneMsl31, Arhgap6, Amelx, Hccs, LOC100040950, BC022960
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073H01.bB6Ng01-073H01.g
ACCDH890572DH890573
length4361,059
definitionDH890572|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H01, 5' end.DH890573|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,849,649 - 164,850,092)(164,991,574 - 164,992,606)
sequence
tccatagatgaaacaaaaatggctaattaacacttaagaaatgctctaca
cttgagaataggacccatgcccagcagtagactgtcaacacaaaattaac
tcaaaagtatttttgtctactctttgtctcatattgctttgcttgggcat
tttccatcttcttgggttttttaaatttgtttttggttttattttggctt
gtgtattatgatttatgactttgtgtttctatggggttttgtgtgtattt
gtgtgtgcctgtgtatgagtgtatgtagttcttcttttttttccctgttt
tttttttttttcataaagaaattaagggcattgtgaagttggatgttggt
tgggtggagataatctggaaagaagtggaggaggaaaaactattttttga
atttttattctaaaactttttgtgaattgaaacatt
gaattctggagaaatgagctctaataatgccaatgaaggaatggacttgc
tagcaagaatgagggcaaacagacaaagagtaagtttttctccttccatg
tcctttatataggcttccaacagaagcctatattttccctcatcaaaaga
ttcagatgaaaggtgaaccttcacatttcaaatgatttaattaagaaaaa
tatctcacaggtgtatccaagtacttgggttttagttaattccagatgta
gtcaaattgacaaccaagaatagccattattatagtcctagttgcatcag
cttttaagagagtgggcactagaggacaggggagctagtataccagttaa
aaatcacttgctgctcttgcagaggacttgagtttgttttcctacacaca
tagggcagctcacaattgtctgtaactctagttctgggagatctgacatc
cttttctcacttctttgggtaccaggcatacttgacttgaacattcatac
ataatggcaagccattcttacacatgaaataaaaccaaacaaatccttaa
aacaaaacaatacaagagctgtcctttaccaaaaagaaatgtttttccct
gggacctcaacaaagctctcctcctttatattcttttaaattaaagaaaa
attgtatgtgtgtatgttttgcctacatgtatgtctgtgtaacacacaca
tgccttgtgcctgaggagggcagaagaaagtggagaaacccctggatctg
gagttatagagggttgtgagctgacatgtgagtgctgggaattgaatcta
ggttccttcagaagaggatccagcattctttttttaaaaaatattttaat
taggtattttcctcatttacatttccaatgctatcccaaaagtcccccat
actccccccccactcccctacccacccactcccacttttggccctggcgt
ccctgtactgggcaaataaagtttgcagtccattgggcttctcttccagt
gatgccgactaggccatctttgatacatatgcagctagagtcaagagctc
ggggtactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_164849649_164850092
seq2: B6Ng01-073H01.b_31_472

seq1  GAATTCTCCATAGATGAAACAAAAATGGCTAATTAACACTTAAGAAATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCATAGATGAAACAAAAATGGCTAATTAACACTTAAGAAATGC  50

seq1  TCTACACTTGAGAATAGGACCCATGCCCAGCAGTAGACTGTCAACACAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACTTGAGAATAGGACCCATGCCCAGCAGTAGACTGTCAACACAAA  100

seq1  ATTAACTCAAAAGTATTTTTGTCTACTCTTTGTCTCATATTGCTTTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCAAAAGTATTTTTGTCTACTCTTTGTCTCATATTGCTTTGCTT  150

seq1  GGGCATTTTCCATCTTCTTGGGTTTTTTAAATTTGTTTTTGGTTTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTTTCCATCTTCTTGGGTTTTTTAAATTTGTTTTTGGTTTTATTT  200

seq1  TGGCTTGTGTATTATGATTTATGACTTTGTGTTTCTATGGGGTTTTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTGTATTATGATTTATGACTTTGTGTTTCTATGGGGTTTTGTGT  250

seq1  GTATTTGTGTGTGCCTGTGTATGAGTGTATGTAGTTCTTCTTTTTTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGTGTGTGCCTGTGTATGAGTGTATGTAGTTCTTCTTTTTTTTCC  300

seq1  CTGTTTTTTTTTTTTTTCATAAAGAAATTAAGGGCATTGTGAAGTTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTTTTTTTTTTCATAAAGAAATTAAGGGCATTGTGAAGTTGGAT  350

seq1  GTTGGTTGGGTGGAGATAATCTGGAAAGAAGTGGAGGAGGAAAAACTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTGGTTGGGTGGAGATAATCTGGAAAGAAGTGGAGGAGGAAAAACTATT  400

seq1  ATCAGAATATATCATACGAAAAAATTTTTGTTAATTGAAACATT  444
       |  |||| | | || |  |||| ||||||| ||||||||||||
seq2  TTTTGAAT-TTTTATTC-TAAAACTTTTTGTGAATTGAAACATT  442

seq1: chrX_164991574_164992606
seq2: B6Ng01-073H01.g_103_1125 (reverse)

seq1  CAGTACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCC  50
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  CAGTACCCC-GAGCTCTTGACTCTAGCTGCATATGTATC-AAAGATGGCC  48

seq1  TAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATA  100
      ||||||| ||||||||| |||||| ||||| ||||| |||||||||||| 
seq2  TAGTCGG-CATCACTGG-AAGAGAAGCCCAATGGAC-TGCAAACTTTATT  95

seq1  TGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGTGGGAGTGGGTGGGTA  150
      || ||||||||||||  ||||||||||| |||||||||||||||||||||
seq2  TG-CCCAGTACAGGG--ACGCCAGGGCC-AAAAGTGGGAGTGGGTGGGTA  141

seq1  GGGGAGTGGGGGGGGGAGTATGGGGGACTTTTGGGATAGCATTGGAAATG  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGT-GGGGGGGGAGTATGGGGGACTTTTGGGATAGCATTGGAAATG  190

seq1  TAAATGAGGAAAATACCTAATTAAAATATTTTTTTAAAAAAAGAATGCTG  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAATGAGGAAAATACCTAATTAAAATA-TTTTTTAAAAAAAGAATGCTG  239

seq1  GATCCTCTTCTGAAGG-ACCTAGATTCAATTCCCAGCACTCACATGTCAG  299
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATCCTCTTCTGAAGGAACCTAGATTCAATTCCCAGCACTCACATGTCAG  289

seq1  CTCACAACCCTCTATAACTCCAGATCCAGGGGTTTCTCCACTTTCTTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACCCTCTATAACTCCAGATCCAGGGGTTTCTCCACTTTCTTCTG  339

seq1  CCCTCCTCAGGCACAAGGCATGTGTGTGTTACACAGACATACATGTAGGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCAGGCACAAGGCATGTGTGTGTTACACAGACATACATGTAGGC  389

seq1  AAAACATACACACATACAATTTTTCTTTAATTTAAAAGAATATAAAGGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATACACACATACAATTTTTCTTTAATTTAAAAGAATATAAAGGAG  439

seq1  GAGAGCTTTGTTGAGGTCCCAGGGAAAAACATTTCTTTTTGGTAAAGGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTTGTTGAGGTCCCAGGGAAAAACATTTCTTTTTGGTAAAGGAC  489

seq1  AGCTCTTGTATTGTTTTGTTTTAAGGATTTGTTTGGTTTTATTTCATGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGTATTGTTTTGTTTTAAGGATTTGTTTGGTTTTATTTCATGTG  539

seq1  TAAGAATGGCTTGCCATTATGTATGAATGTTCAAGTCAAGTATGCCTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGGCTTGCCATTATGTATGAATGTTCAAGTCAAGTATGCCTGGT  589

seq1  ACCCAAAGAAGTGAGAAAAGGATGTCAGATCTCCCAGAACTAGAGTTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGAAGTGAGAAAAGGATGTCAGATCTCCCAGAACTAGAGTTACA  639

seq1  GACAATTGTGAGCTGCCCTATGTGTGTAGGAAAACAAACTCAAGTCCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTGTGAGCTGCCCTATGTGTGTAGGAAAACAAACTCAAGTCCTCT  689

seq1  GCAAGAGCAGCAAGTGATTTTTAACTGGTATACTAGCTCCCCTGTCCTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGCAGCAAGTGATTTTTAACTGGTATACTAGCTCCCCTGTCCTCT  739

seq1  AGTGCCCACTCTCTTAAAAGCTGATGCAACTAGGACTATAATAATGGCTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCACTCTCTTAAAAGCTGATGCAACTAGGACTATAATAATGGCTA  789

seq1  TTCTTGGTTGTCAATTTGACTACATCTGGAATTAACTAAAACCCAAGTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTTGTCAATTTGACTACATCTGGAATTAACTAAAACCCAAGTAC  839

seq1  TTGGATACACCTGTGAGATATTTTTCTTAATTAAATCATTTGAAATGTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATACACCTGTGAGATATTTTTCTTAATTAAATCATTTGAAATGTGA  889

seq1  AGGTTCACCTTTCATCTGAATCTTTTGATGAGGGAAAATATAGGCTTCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCACCTTTCATCTGAATCTTTTGATGAGGGAAAATATAGGCTTCTG  939

seq1  TTGGAAGCCTATATAAAGGACATGGAAGGAGAAAAACTTACTCTTTGTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCCTATATAAAGGACATGGAAGGAGAAAAACTTACTCTTTGTCT  989

seq1  GTTTGCCCTCATTCTTGCTAGCAAGTCCATTCCT  1033
      ||||||||||||||||||||||||||||||||||
seq2  GTTTGCCCTCATTCTTGCTAGCAAGTCCATTCCT  1023