BAC Information

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BAC

Clone NameB6Ng01-073H17
ChromosomeX (Build37)
Map Location 79,423,649 - 79,548,491
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041462, LOC100041474, 4930595M18Rik, EG667799
Downstream geneEG629310, Dmd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073H17.bB6Ng01-073H17.g
ACCDH890601DH890602
length1,2191,149
definitionDH890601|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H17, 5' end.DH890602|Mus musculus domesticus DNA, BAC clone: B6Ng01-073H17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,547,265 - 79,548,491)(79,423,649 - 79,424,795)
sequence
gaattctgcagtttcttctctgaaccacagccacttatgggtctctgtgt
taagtggaaatggaaactctttaaatgaaggttaggatgtattgatttgt
ggttataataattacttcttaagggtcagttactcctttcaaagttgttg
accatttttggtacatagatgcccaagacattagatgttcttgccatttc
tcttagttacgctccagaaactgatgttaaaactctattgtcgaactcac
catcacatgcttgaatcttagaagatagagaagccacactgaacctaacc
tggtatctccacccttattggctagatttcatgcactggaaggtgaactc
tatgtgctaaagtaaaagtagacttggaaatgcatgcgtgctggtgcaac
attgtgagagtaaccaatcatttcctgattagatttaatacaccttctat
tagatgaaaaatggaactgtaccatttccaagccataactatggacaaat
acatcctgggccctaggggataacctattcctattattatgctaaattgt
cataatattacaatgactattcattggcattttaacataattttattttg
ctgattttattatcatttttctttcctaccacctgtttcccacgtgtaat
cttctgcccacagtatactctattgtgaattcatgatacatggattgtca
tgactttccacttcttcaatacctttgttttctgtactaatggtcttctt
taaaattgcataaactatatccacatttatacctgtgtacctgtgcgtaa
gcttttggatgtgtgtgtctgtatatgagtgtgtacatattttcttagac
attgccacaaaaacagtgcattttgaagctgtgaacactgactttgtttt
cttgttattaattcaatttgctttagacaaatttatacatgtataaaatt
cactatagtaatcttcttacccttaagacaaagacatttagttaaaacac
acacacacaaaccatcaaaattcaagatttctggatgccaccttcaatgg
atacatatacaatataactcatctacctaagattcagggatcatcataag
gaggagaaggaaatttatatggtaccagcagatcttcatagggcctcaac
cttagtgaaagacctaggaaacttagggatgcctacagcatggaacatct
ctcagaaagagccatcaat
gaattccctgcctttcttctgtggtgaagaaaacctgcaacaattactaa
caattattcagtaagtgttggaggaggggatagggccatccaaggagatg
caggacaggaacatggtgcacccgcttcctgggccacagaactccctgaa
agctcatcatcggggccatgtgctgagtgctggccactctttggtccgtg
ggaaggtctgagactacggtctccctgagcagggagcgggggtaagttct
cagagagcagggcagactgggcaggagacaccctgagtgggtggatgcct
ctctccctcgccagagctcaagacagactcatggcctgctgcaggagggg
ggaaaggaacagggttggggctgcaggaaaagaaacagccaccaagaaaa
cacagggtgagggaagggagtgtagctctcacagtcagctgcactgggca
actggcatctcaaagtgaaagcactttctctgctaacaagaggaactatg
gcttactgccaaagcctggaggcaggcaggtgggatgcaggggaaagtaa
aacattattaggcaagtatgaaaagcagccagggcaaggaagaacacagg
gtgctcctggctggccactcccaaagcctcttccatctccccttcagcag
tcacaacatttggggccactgacttctcagggaccacccctcttttgctc
caggtttcctgagctcattcctccctaggctctgggtctgtgggcagacc
gctgcgccctgcctgctgctccctaaagttggagagtgggaggcaggggt
gctgaggatctgggaagggaagaggtcagccacagggtctgacaggattc
ttaggctttacccagaggccataactcaaactagtccaaattctgaacac
aaagagacacaagacatcattacaaatactgtcgaagataacgcagtaca
ttatcctacagaaacaaatctattctttacccagagaacactctagaccc
acagaatcaatcttttcaggcaccaccacagattaaacggaatccgattg
cccagggataaattacttctctggccaatggagaagtagaagaacccttc
tcaggtcctttctccagtcaatgggaacagagaacgttttaaggtcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_79547265_79548491
seq2: B6Ng01-073H17.b_40_1258 (reverse)

seq1  ATTGATTTGCTCTTTCCTGAAGAAGATTGTCTCATGCTGTTAGCATTCCT  50
      ||||| | ||||||| ||||   ||| |||  ||||||||  |||| |||
seq2  ATTGA-TGGCTCTTT-CTGA--GAGA-TGTTCCATGCTGTAGGCATCCCT  45

seq1  TAGTTTCCTAGAGTTCTTCACTTAAGGTTGAGGCCTCATGAAGTTTCTGC  100
       |||||||||| ||  ||||| |||||||||||||  ||||||  |||||
seq2  AAGTTTCCTAG-GTCTTTCAC-TAAGGTTGAGGCCCTATGAAG-ATCTGC  92

seq1  TGGGTACATTATAATTTTCCTTCTTCCTCTTTATGAATGATCCCTGAATC  150
      | |||||  ||||| |||||||| ||||| ||||| ||||||||||||||
seq2  T-GGTACCATATAAATTTCCTTC-TCCTCCTTATG-ATGATCCCTGAATC  139

seq1  TTAGGTAGATGAGTTATATTGTATATGTATCCTTTGAAGGTGGCATCCAG  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTAGGTAGATGAGTTATATTGTATATGTATCCATTGAAGGTGGCATCCAG  189

seq1  AAATC-TGGATTTTGATTGGTTTGTGTGTGTGTGTTTTAACTATATGTCT  249
      ||||| || ||||||| |||||||||||||||||||||||||| ||||||
seq2  AAATCTTGAATTTTGA-TGGTTTGTGTGTGTGTGTTTTAACTAAATGTCT  238

seq1  TTGTCTTAAGGGTAAG-AGAATACTTATAGTGAATTTTATACATGTATAA  298
      |||||||||||||||| ||| ||| |||||||||||||||||||||||||
seq2  TTGTCTTAAGGGTAAGAAGATTAC-TATAGTGAATTTTATACATGTATAA  287

seq1  ATTTGTCTAAAGCAAATTGAATTAATAACAAGAAAAC-AAGTCAGTGTTC  347
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTTGTCTAAAGCAAATTGAATTAATAACAAGAAAACAAAGTCAGTGTTC  337

seq1  ACAGCTTC-AAATGCACTGTTTTTGTGGCAATGTCTAAGAAAATATGTAC  396
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCAAAATGCACTGTTTTTGTGGCAATGTCTAAGAAAATATGTAC  387

seq1  ACACTCATATACAGACACACACATCCAAAAGCTTACGCACAGGTACACAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATATACAGACACACACATCCAAAAGCTTACGCACAGGTACACAG  437

seq1  GTATAAATGTGGATATAGTTTATGCAATTTTAAAGAAGACCATTAGTACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATGTGGATATAGTTTATGCAATTTTAAAGAAGACCATTAGTACA  487

seq1  GAAAACAAAGGTATTGAAGAAGTGGAAAGTCATGACAATCCATGTATCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAAGGTATTGAAGAAGTGGAAAGTCATGACAATCCATGTATCAT  537

seq1  GAATTCACAATAGAGTATACTGTGGGCAGAAGATTACACGTGGG-AACAG  595
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAATTCACAATAGAGTATACTGTGGGCAGAAGATTACACGTGGGAAACAG  587

seq1  GTGGTAGGAAAGAAAAATGATAATAAAATCAGCAAAATAAAATTATGTTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGGAAAGAAAAATGATAATAAAATCAGCAAAATAAAATTATGTTA  637

seq1  AAATGCCAATGAATAGTCATTGTAATATTATGACAATTTAGCATAATAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAATGAATAGTCATTGTAATATTATGACAATTTAGCATAATAAT  687

seq1  AGGAATAGGTTATCCCCTAGGGCCCAGGATGTATTTGTCCATAGTTATGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAGGTTATCCCCTAGGGCCCAGGATGTATTTGTCCATAGTTATGG  737

seq1  CTTGGAAATGGTACAGTTCCATTTTTCATCTAATAGAAGGTGTATTAAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAATGGTACAGTTCCATTTTTCATCTAATAGAAGGTGTATTAAAT  787

seq1  CTAATCAGGAAATGATTGGTTACTCTCACAATGTTGCACCAGCACGCATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCAGGAAATGATTGGTTACTCTCACAATGTTGCACCAGCACGCATG  837

seq1  CATTTCCAAGTCTACTTTTACTTTAGCACATAGAGTTCACCTTCCAGTGC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAAGTCTACTTTTACTTTAGCACATAGAGTTCACCTTCCAGTGC  887

seq1  ATGAAATCTAGCCAATAAGGGTGGAGATACCAGGTTAGGTTCAGTGTGGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCTAGCCAATAAGGGTGGAGATACCAGGTTAGGTTCAGTGTGGC  937

seq1  TTCTCTATCTTCTAAGATTCAAGCATGTGATGGTGAGTTCGACAATAGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATCTTCTAAGATTCAAGCATGTGATGGTGAGTTCGACAATAGAG  987

seq1  TTTTAACATCAGTTTCTGGAGCGTAACTAAGAGAAATGGCAAGAACATCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACATCAGTTTCTGGAGCGTAACTAAGAGAAATGGCAAGAACATCT  1037

seq1  AATGTCTTGGGCATCTATGTACCAAAAATGGTCAACAACTTTGAAAGGAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTGGGCATCTATGTACCAAAAATGGTCAACAACTTTGAAAGGAG  1087

seq1  TAACTGACCCTTAAGAAGTAATTATTATAACCACAAATCAATACATCCTA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGACCCTTAAGAAGTAATTATTATAACCACAAATCAATACATCCTA  1137

seq1  ACCTTCATTTAAAGAGTTTCCATTTCCACTTAACACAGAGACCCATAAGT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATTTAAAGAGTTTCCATTTCCACTTAACACAGAGACCCATAAGT  1187

seq1  GGCTGTGGTTCAGAGAAGAAACTGCAGAATTC  1227
      ||||||||||||||||||||||||||||||||
seq2  GGCTGTGGTTCAGAGAAGAAACTGCAGAATTC  1219

seq1: chrX_79423649_79424795
seq2: B6Ng01-073H17.g_68_1216

seq1  GAATTCCCTGCCTTTCTTCTGTGGTGAAGAAAACCTGCAACAATTACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGCCTTTCTTCTGTGGTGAAGAAAACCTGCAACAATTACTAA  50

seq1  CAATTATTCAGTAAGTGTTGGAGGAGGGGATAGGGCCATCCAAGGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATTCAGTAAGTGTTGGAGGAGGGGATAGGGCCATCCAAGGAGATG  100

seq1  CAGGACAGGAACATGGTGCACCCGCTTCCTGGGCCACAGAACTCCCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGGAACATGGTGCACCCGCTTCCTGGGCCACAGAACTCCCTGAA  150

seq1  AGCTCATCATCGGGGCCATGTGCTGAGTGCTGGCCACTCTTTGGTCCGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATCATCGGGGCCATGTGCTGAGTGCTGGCCACTCTTTGGTCCGTG  200

seq1  GGAAGGTCTGAGACTACGGTCTCCCTGAGCAGGGAGCGGGGGTAAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCTGAGACTACGGTCTCCCTGAGCAGGGAGCGGGGGTAAGTTCT  250

seq1  CAGAGAGCAGGGCAGACTGGGCAGGAGACACCCTGAGTGGGTGGATGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCAGGGCAGACTGGGCAGGAGACACCCTGAGTGGGTGGATGCCT  300

seq1  CTCTCCCTCGCCAGAGCTCAAGACAGACTCATGGCCTGCTGCAGGAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCGCCAGAGCTCAAGACAGACTCATGGCCTGCTGCAGGAGGGG  350

seq1  GGAAAGGAACAGGGTTGGGGCTGCAGGAAAAGAAACAGCCACCAAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAACAGGGTTGGGGCTGCAGGAAAAGAAACAGCCACCAAGAAAA  400

seq1  CACAGGGTGAGGGAAGGGAGTGTAGCTCTCACAGTCAGCTGCACTGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGTGAGGGAAGGGAGTGTAGCTCTCACAGTCAGCTGCACTGGGCA  450

seq1  ACTGGCATCTCAAAGTGAAAGCACTTTCTCTGCTAACAAGAGGAACTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCATCTCAAAGTGAAAGCACTTTCTCTGCTAACAAGAGGAACTATG  500

seq1  GCTTACTGCCAAAGCCTGGAGGCAGGCAGGTGGGATGCAGGGGAAAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTGCCAAAGCCTGGAGGCAGGCAGGTGGGATGCAGGGGAAAGTAA  550

seq1  AACATTATTAGGCAAGTATGAAAAGCAGCCAGGGCAAGGAAGAACACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATTAGGCAAGTATGAAAAGCAGCCAGGGCAAGGAAGAACACAGG  600

seq1  GTGCTCCTGGCTGGCCACTCCCAAAGCCTCTTCCATCTCCCCTTCAGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCTGGCTGGCCACTCCCAAAGCCTCTTCCATCTCCCCTTCAGCAG  650

seq1  TCACAACATTTGGGGCCACTGACTTCTCAGGGACCACCCCTCTTTTGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACATTTGGGGCCACTGACTTCTCAGGGACCACCCCTCTTTTGCTC  700

seq1  CAGGTTTCCTGAGCTCATTCCTCCCTAGGCTCTGGGTCTGTGGGCAGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCCTGAGCTCATTCCTCCCTAGGCTCTGGGTCTGTGGGCAGACC  750

seq1  GCTGCGCCCTGCCTGCTGCTCCCTAAAGTTGGAGAGTGGGAGGCAGGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGCCCTGCCTGCTGCTCCCTAAAGTTGGAGAGTGGGAGGCAGGGGT  800

seq1  GCTGAGGATCTGG--AAGGAAGAGGTCAGCAACAGGGTCTGACAGGATTC  848
      |||||||||||||  | ||||||||||||| |||||||||||||||||||
seq2  GCTGAGGATCTGGGAAGGGAAGAGGTCAGCCACAGGGTCTGACAGGATTC  850

seq1  TTAGGCTTTACCCAGAGGCCATAACTCAAAACAAGTCC-AAGTCTGAACA  897
      ||||||||||||||||||||||||||| |||| ||||| || ||||||||
seq2  TTAGGCTTTACCCAGAGGCCATAACTC-AAACTAGTCCAAATTCTGAACA  899

seq1  CAAAGAGACACAAGACA-CATAACAAAAACCGTCG-AGATAACGCAGTAC  945
      ||||||||||||||||| ||| ||||| || |||| ||||||||||||||
seq2  CAAAGAGACACAAGACATCATTACAAATACTGTCGAAGATAACGCAGTAC  949

seq1  AGTAATCCCACAGAAACAAAACCAATCTTAACACAGAGAAACACACAAGA  995
      | | |||| ||||||||||| | | |||| || ||||| ||||| | |||
seq2  A-TTATCCTACAGAAACAAATCTATTCTTTACCCAGAG-AACACTCTAGA  997

seq1  CACACAGAAACCATC-TTTCAGGCAACCACCACAGAATAAAAACGGAATC  1044
      | ||||||| | ||| |||||||| ||||||||||| |  ||||||||||
seq2  CCCACAGAATCAATCTTTTCAGGC-ACCACCACAGATT--AAACGGAATC  1044

seq1  AGA-TGGCCAGGGAT-AATTACTTCTCCTGCCCAAATGGAGA-----GAG  1087
       || || |||||||| |||||||||||  |||  ||||||||      ||
seq2  CGATTGCCCAGGGATAAATTACTTCTCTGGCC--AATGGAGAAGTAGAAG  1092

seq1  AGACCCTCTCAGGGTCTTTCTCCCAGCCCAGATGGAGACAGAGAACGTTT  1137
      |  || |||||||  |||||| |||| |   ||||  |||||||||||||
seq2  AACCCTTCTCAGGTCCTTTCT-CCAGTC--AATGGGAACAGAGAACGTTT  1139

seq1  TAGGGTCTTT  1147
      || |||||||
seq2  TAAGGTCTTT  1149